SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6234

Length: 1282 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene6234 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GINS complex subunit 4 [Arabidopsis thaliana] gb\|AAQ62407.1\| At5g49010 [Arabidopsis thaliana] dbj\|BAD94796.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED95756.1\| GINS complex subunit 4 [Arabidopsis thaliana]	-	-	0.0	54%
FL-Next	tr=Uncharacterized protein; Oryza glaberrima (African rice).	-	-	0.0	67%
Sma3	Chromosome chr5 scaffold_64, whole genome shotgun sequence	-	-	9.389e-06	-

Source	Gene names
Sma3	At5g49010; GSVIVT00033159001; GSVIVT00033211001; MICPUCDRAFT_33594; Os05g0143400; OsI_18422; OsJ_17082; PHYPADRAFT_232587; POPTRDRAFT_721056; RCOM_1000840; VITISV_029865; VITISV_037819; VITISV_038867;

Source	GOs	Term	Type	e value	Identity
Sma3	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	GINS complex, subunit Sld5	IPR008591	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G49010.1	SLD5 DNA replication protein-related chr5:19866464-19868074 FORWARD LENGTH=220	54%
RefSeq	Arabidopsis thaliana	NP_199712.2	GINS complex subunit 4 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002311380.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: I1PSD1

Fln msg:

Fln protein: MENEEGTTSSPGPANNSSQAFWTQEDTADVSGAATDVELLKRAWRNEKAAPEILTFQNDLVQRSREQIQLLEEAIEAFAESGTDDLMLSLYRMDLDRTLFLLRSYLRTRLQKIEKYVIHISITEELWDRLSKPEQKFAEKCTDALQKHLEQSVLSKLPQGYQSMIKQAISSEENDMVPVPQLDTFVFCKSRGPIGSFQLDDKGEDMVNLVADDLYILRYRPIKGLVETAQIDLV*

Protein Length: 236

Fln nts: ATGGGGAGTCATCTCTCTGCGGTTCCTGAAATATTTTGAAGTTCGAAAAAGAAAACGTTATCCCCTCTTCTACCTGTATTATTTAACTCAATTGTTTTCGGCCCATCACTTCCCCAAAGCTACATCGTTCGCGTTACAAACCATAAACCCCTTGCCATTAATACCTTTTTCAAACCATAACTATAAACACATGATTGGTTGAGTAGAGGAATGAGAGTTTTCTGCACCAGCGTAGCCCGAATTTGCTGATACAAACGCCCAGACAATA_-_ATGGAGAACGAGGAAGGCACAACCTCTTCCCCCGGGCCAGCGAATAACTCCTCTCAAGCATTTTGGACGCAAGAAGACACCGCAGACGTATCCGGGGCTGCTACGGATGTCGAGCTTCTAAAACGGGCCTGGAGAAATGAGAAAGCTGCTCCAGAAATTCTTACCTTCCAGAATGACCTGGTTCAGCGCTCCAGAGAGCAAATACAATTGCTGGAAGAGGCTATCGAAGCCTTTGCCGAGAGTGGAACTGACGACCTTATGCTATCGCTGTACCGCATGGACTTGGACCGCACACTATTTTTGCTGAGGTCCTACCTACGGACTCGCCTTCAAAAGATTGAAAAGTATGTAATTCACATTTCAATAACAGAGGAACTCTGGGATAGGCTCTCTAAACCAGAACAGAAGTTCGCTGAAAAATGTACAGATGCTTTGCAAAAGCATCTTGAACAGTCTGTTTTAAGCAAATTGCCACAAGGTTACCAATCTATGATCAAGCAAGCCATTTCAAGTGAAGAAAATGACATGGTACCTGTACCGCAACTGGACACATTTGTTTTCTGCAAGAGCAGGGGCCCAATTGGATCCTTTCAGCTGGATGATAAGGGTGAAGACATGGTGAACTTAGTGGCGGATGATCTTTATATTCTGAGATATAGGCCAATAAAGGGGCTTGTGGAGACTGCTCAGATTGATTTAGTATAG___AAAACTCAAGATTATTGGCTGAGGCCAGGACGATTTATACTAGAATCAATTTTGATGGTAAATTGGTAAATTGCTAGTATTAAAAAAATGATCTTCTAGACATCAATAGGCGGTATCTATAGTTTATGTGCACGCAATTACTACTGATTACTAATCATATTTGCGGTGAATCAAAACCAGGGGTATCTTAGGCCACTTATTTACTGCTGGCAGACAAAAATGTGATAAAATAGGGGGCATATACTAGTTTGCAATTACTTCCCCAACTTTTTTTTTACTTGAATGGAGTTAGTAAAGCTCGGTTTTACC

Fln Alignment:

Contig6234___WTQEDTADVSGAA----TDVELLKRAWRNEKAAPEILTFQNDLVQRSREQIQLLEEAIEAFAESGTDDLMLSLYRMDLDRTLFLLRSYLRTRLQKIEKYVIHISITEELWDRLSKPEQKFAEKCTDALQKHLEQSVLSKLPQGYQSMIKQAISSEENDMVPVPQLDTFVFCKSRGPIGSFQLDDKGEDMVNLVADDLYILRYRPIKGLVETAQIDLV
I1PSD1______________WEDDDSAAAAAAAAAASTDVELLKRAWRNEKASPEILRFDSPLVSRVREQIQLLEETLDDFGESGVDDLVVSLYQMDLDRTLFLLRSYLRLRLQKIEKYMMHISKSEDLLSRLSQQEQRFAKSCTEMMEKHLEQSVLSKLPYGYDSVTRQSLSSTEDDMVPEPQLDTFVFCKTKSDVGAFQLDDIGEEVVDLVADDLYVLRYKSIKGLVESGQIDLI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
853	83		16		0.994512
995		25	75		1.0
1061			43	56	1.0
1122	40			60	1.0
1199		25		75	0.996473
1200	75		25		0.996473
1211	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain