SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6139

Length: 2209 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene6139
CAGCGGATACTAGATTTTCTCTCGTGAATAAGAGTGGGAAAGTTTTACTGAATCAAGGCTTCAAGCTATGGAAGAATTCCTCTCAAGTGACCTTGGTTGCTTCTTTCAATTCTTCTTTTGTTCTGAATATAGTGAACAAGAGTGGAAACGGTGGCGATGGCTTGGCTTTCATTGTAACGAATGAGAAAAATGGTTCCCCTGAGAATAGTTACGGGCAGTATCTGGGACTGTTCAACTCTACCACGAATGGGGATTCAAATAACAGATTGGTTGCAGTGGAGTTCGATACCAGAAAGAGCAATGCCAACGACACAGATGATAATCACGTCGGAATAGATGTGAACAAGATAGAATCCATCAAAAGTGCTTCTGTGAGTCCTCGCAATATTACCCTTCTAAGCCAATCGGACATTGCTGCGCTGGTTCAGTACGACGGGGGTTCGAAACTGTTGAGCGTGTATATCAACAATGGTGACACAGCGAATCCCTCAAACCCTCTTCTTTCTGTTAAACTTGATTTGTCTATGATTCTGGATGATGAAATCTATTTTGGCTTCTCGGCTTCGACGGGTGTTCAAACCGAGCTTAACTGCATTCGATCCTGGAACCTCACTATGCAAAATCTGGGGTCAGGGAACCGTAATGGGCTCTATTCGTGTTCTGGACAGAGCCCTGACGAATTCGACAGTGGGACCTCGTAAGTTCAGACTGAGGGAAGTTAGGCGTGCTACTCGGAATTTTGATAGGAAAAGCCTGCTGGGTCAAGGAGGGTTTGGGGCTGTGTACAGAGGGGTGTTGTCTAATAAAACCCCTGTCGCTGTAAAACGAGTTTCGGAGAACTCTAATCAGGGTGAGCAGGAGTTCATGGCAGAGGTCATGATTATTAGTAGGCTTCGCCACAAGAACCTTGTGAGGCTGTTAGGTTGGTGCCATGAAGATAACGAACTGCTGCTGATCTATGACTTGATGCCCAATGGTAGCCTGGATAAGTTGATTTTTGAAGAAGATGCTAAGCACGAGGTTTTGGACTGGCATCACAGATGCAAGATAGTGTGTGGAGTTGCCTCGGCTATGCTCTATCTGCACGAAGAATGTGAGCAGCAGGTGATCCACAGGGATTTGAAGGCTAGCAACATCATGCTTGATTCTGATTACAATGCTCGTCTGGGTGATTTTGGGCTTGCTAGATTGATTGAACTTAATAAGAACTCTTATACCACAACTGCAATAGCAGGTACTCCCGGGTATATTGCACCAGAGTACTTTCACACCGGGAGGTCTACAACTGAATCTGATGTGTTTGGTTTTGGGGCTGTGGCTCTAGAGGTTGCTTGTGGGAGAAGACCCAGAACAGAGGCACAGCTTTATCTTGTTGATTGGGTCTGGGGGCTGTATCGAGAAGGCAGGCTTCTTGATGCTGCAGATCCCAGGCTAAATGAGTTTGATAAAGATGAGATGATATGCATGTTACTTGTTGGTATGGCTTGCTCTCATCCCAACCCTCAAGAAAGGCCAACAATGAGACAGGTTCTACAAATCCTTACCAAAGATGCACCCCCTCCACTTATGCCCTTGTTTAAGCCTGCATTTGTCTGGCCTGCCCCCGGTATGACTGATATCCAATCTAGTTCTAGTGATTTTAGCACACAGTAAAACAGAGCAGCTTTGAATGTGTAGATAAGAAGATCAAGGGAAGTGAGCAGATTTGGGGCAATCCTCTCTTCCCCTCAAATTTCCTTTTTCCTTGTGTTTGGAACATTGTTTTGGTTGAAGAGGATGTGGAGCAGGGATGGGTATTTTCAATTATTTTAGGAATTTCGTTTTTTCCCATTTTGTGTGTGTGTATTGCCATGCTCGTTCAAGAAATCAATCAGGTGTCCTTTTGTAGTTTGTCTTGTTCTTTTGCTTTTACTCGAGGAAGTGGATCAAGTACCTGCTCGTAGAAATGTGGCCTTGCCACATGGGTAGATAAAGTCAAAGGCCTCGCCCTGTGCTAAAATCTCTTCTCCGTTATACTATCCCATATGACATGTAAAAGCAACAGCGGAAATCCAGACTTTATTATGTATGCTGGACTTTTCTGAAGGATGTAAGCCACTGAATGGTTATTTCGTGCTAGTTTATCTCAGAAATCATTTGCCTGTGTAAATATCTTTTATCATATGTGAGTTAAGGGAATGTGTTGAGAGAAGCCAATAAAAATAAGTTT

Ace file of the UniGene sp_v3.0_unigene6139 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable L-type lectin-domain containing receptor kinase S.5 n=2 Tax=Arabidopsis RepID=LRKS5_ARATH	-	-	0.0	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Kinase, putative	-	-	2.041e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	6.43e-16	-
Sma3	Cyclin-dependent kinase.	EC:2.7.11.22	-	4.711e-12	-

Source	Gene names
Sma3	117M18_32; AT4g02410; AT4g02420; AT4g28350; At2g37710; At3g53380; At3g53810; At4g02410; At4g02420; At4g28350; At5g01560; At5g03140; At5g06740; At5g10530; At5g55830; At5g65600; F12B17_120; F15A17_170; F20O9.40; F4P12_80; F5K20_110; F7A7.80; GSVIVT000012970

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	seed germination	GO:0009845	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3		IPR001899	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Plastocyanin-like	IPR003245	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G06740.1	Concanavalin A-like lectin protein kinase family protein chr5:2084094-2086052 FORWARD LENGTH=652	51%
RefSeq	Arabidopsis thaliana	NP_196292.1	concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002300537.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC0

Fln msg: Separated hits, possible frame ERROR between 620 and 694, your sequence is shorter than subject: 551 - 636

Fln protein: ADTRFSLVNKSGKVLLNQGFKLWKNSSQVTLVASFNSSFVLNIVNKSGNGGDGLAFIVTNEKNGSPENSYGQYLGLFNSTTNGDSNNRLVAVEFDTRKSNANDTDDNHVGIDVNKIESIKSASVSPRNITLLSQSDIAALVQYDGGSKLLSVYINNGDTANPSNPLLSVKLDLSMILDDEIYFGFSASTGVQTELNCIRSWNLTMxxxxxxxxxxxxxxxxxxxxxxxxxxPRKFRLREVRRATRNFDRKSLLGQGGFGAVYRGVLSNKTPVAVKRVSENSNQGEQEFMAEVMIISRLRHKNLVRLLGWCHEDNELLLIYDLMPNGSLDKLIFEEDAKHEVLDWHHRCKIVCGVASAMLYLHEECEQQVIHRDLKASNIMLDSDYNARLGDFGLARLIELNKNSYTTTAIAGTPGYIAPEYFHTGRSTTESDVFGFGAVALEVACGRRPRTEAQLYLVDWVWGLYREGRLLDAADPRLNEFDKDEMICMLLVGMACSHPNPQERPTMRQVLQILTKDAPPPLMPLFKPAFVWPAPGMTDIQSSSSDFSTQ*

Protein Length: 552

Fln nts: CAGCGGATACTAGATTTTCTCTCGTGAATAAGAGTGGGAAAGTTTTACTGAATCAAGGCTTCAAGCTATGGAAGAATTCCTCTCAAGTGACCTTGGTTGCTTCTTTCAATTCTTCTTTTGTTCTGAATATAGTGAACAAGAGTGGAAACGGTGGCGATGGCTTGGCTTTCATTGTAACGAATGAGAAAAATGGTTCCCCTGAGAATAGTTACGGGCAGTATCTGGGACTGTTCAACTCTACCACGAATGGGGATTCAAATAACAGATTGGTTGCAGTGGAGTTCGATACCAGAAAGAGCAATGCCAACGACACAGATGATAATCACGTCGGAATAGATGTGAACAAGATAGAATCCATCAAAAGTGCTTCTGTGAGTCCTCGCAATATTACCCTTCTAAGCCAATCGGACATTGCTGCGCTGGTTCAGTACGACGGGGGTTCGAAACTGTTGAGCGTGTATATCAACAATGGTGACACAGCGAATCCCTCAAACCCTCTTCTTTCTGTTAAACTTGATTTGTCTATGATTCTGGATGATGAAATCTATTTTGGCTTCTCGGCTTCGACGGGTGTTCAAACCGAGCTTAACTGCATTCGATCCTGGAACCTCACTATGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACCTCGTAAGTTCAGACTGAGGGAAGTTAGGCGTGCTACTCGGAATTTTGATAGGAAAAGCCTGCTGGGTCAAGGAGGGTTTGGGGCTGTGTACAGAGGGGTGTTGTCTAATAAAACCCCTGTCGCTGTAAAACGAGTTTCGGAGAACTCTAATCAGGGTGAGCAGGAGTTCATGGCAGAGGTCATGATTATTAGTAGGCTTCGCCACAAGAACCTTGTGAGGCTGTTAGGTTGGTGCCATGAAGATAACGAACTGCTGCTGATCTATGACTTGATGCCCAATGGTAGCCTGGATAAGTTGATTTTTGAAGAAGATGCTAAGCACGAGGTTTTGGACTGGCATCACAGATGCAAGATAGTGTGTGGAGTTGCCTCGGCTATGCTCTATCTGCACGAAGAATGTGAGCAGCAGGTGATCCACAGGGATTTGAAGGCTAGCAACATCATGCTTGATTCTGATTACAATGCTCGTCTGGGTGATTTTGGGCTTGCTAGATTGATTGAACTTAATAAGAACTCTTATACCACAACTGCAATAGCAGGTACTCCCGGGTATATTGCACCAGAGTACTTTCACACCGGGAGGTCTACAACTGAATCTGATGTGTTTGGTTTTGGGGCTGTGGCTCTAGAGGTTGCTTGTGGGAGAAGACCCAGAACAGAGGCACAGCTTTATCTTGTTGATTGGGTCTGGGGGCTGTATCGAGAAGGCAGGCTTCTTGATGCTGCAGATCCCAGGCTAAATGAGTTTGATAAAGATGAGATGATATGCATGTTACTTGTTGGTATGGCTTGCTCTCATCCCAACCCTCAAGAAAGGCCAACAATGAGACAGGTTCTACAAATCCTTACCAAAGATGCACCCCCTCCACTTATGCCCTTGTTTAAGCCTGCATTTGTCTGGCCTGCCCCCGGTATGACTGATATCCAATCTAGTTCTAGTGATTTTAGCACACAGTAAAACAGAGCAGCTTTGAATGTGTAGATAAGAAGATCAAGGGAAGTGAGCAGATTTGGGGCAATCCTCTCTTCCCCTCAAATTTCCTTTTTCCTTGTGTTTGGAACATTGTTTTGGTTGAAGAGGATGTGGAGCAGGGATGGGTATTTTCAATTATTTTAGGAATTTCGTTTTTTCCCATTTTGTGTGTGTGTATTGCCATGCTCGTTCAAGAAATCAATCAGGTGTCCTTTTGTAGTTTGTCTTGTTCTTTTGCTTTTACTCGAGGAAGTGGATCAAGTACCTGCTCGTAGAAATGTGGCCTTGCCACATGGGTAGATAAAGTCAAAGGCCTCGCCCTGTGCTAAAATCTCTTCTCCGTTATACTATCCCATATGACATGTAAAAGCAACAGCGGAAATCCAGACTTTATTATGTATGCTGGACTTTTCTGAAGGATGTAAGCCACTGAATGGTTATTTCGTGCTAGTTTATCTCAGAAATCATTTGCCTGTGTAAATATCTTTTATCATATGTGAGTTAAGGGAATGTGTTGAGAGAAGCCAATAAAAATAAGTTT

Fln Alignment:

Contig6139___VASFNSSFVLNIVNKSGN-GGDGLAFIVTNEKNGSPENSYGQYLGLFNSTTNGDSNNRLVAVEFDT-RKSNANDTDDNHVGIDVNKIESIKSASVSPRN------ITLLSQSDIAALVQYDGGSKLLSVYINNGDTANPSNPLLSVKLDLSMILDDEIYFGFSASTGVQTELNCIRSWNLTMQxxxxxxxxxxxxxxxxxxxxxxxxxPRKFRLREVRRATRNFDRKSLLGQGGFGAVYRGVL-SNKTPVAVKRVSENSNQGEQEFMAEVMIISRLRHKNLVRLLGWCHEDNELLLIYDLMPNGSLDKLIFEEDAKHEVLDWHHRCKIVCGVASAMLYLHEECEQQVIHRDLKASNIMLDSDYNARLGDFGLARLIELNKNSYTTTAIAGTPGYIAPEYFHTGRSTTESDVFGFGAVALEVACGRRP----RTEAQLYLVDWVWGLYREGRLLDAADPRL---NEFDKDEMICMLLVGMACSHPNPQERPTMRQVLQILTKDAPPP
A9NVC0______________ISSFSTTFVFSIVPPPSNAGGNGIAFFMTPHTS-SMDAQPSQYLGLLNLTTNGQAYNHLFAVEFDTIMNVEFNDPDGNHVGVDVNNLVSVQTETAGYWNGEEFHELNLRSGRNIQAWIDYDHLQSRLDVTMTVVGLPRPQKPLISLQIDLHNVLQEKMYVGFSAATGLFMEDHYVLAWSFTTQxxxxxxxxxxxxxxxxxxxxxxxxxPHRFTYKELSIATSRFRDENVLGYGGFGMVYKGVLPSSGQEVAVKCITTEFTEGMKGFVAEISSMGRLRHRNLVQLRGWCRRHTQLFIVYDYMPNGSLDKLIFGNPTT--VLPWHRRYAILKGVAAGLLYLHEQWEKRVVHRDIKSSNVLLDSELNGRLGDFGLARLYDHAENP-ETTHVVGTLGYIAPELIQTGKATPSSDVFSFGVLLLEVACGRNPVDSLEDSERMILAEWAWELYTEGRLLEASDPKLAGKGGYDVGEMEKVLKLGLLCSHPEPESRLGMRHVCQILDGEAPIP

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1035	11		88		0.923564
1058	11			88	0.923564
1059		11		88	0.923564
1060	11		88		0.923564
1062	87			12	0.992554
1093		87		12	0.992554
1111	12	87			0.992554
1113			87	12	0.992554
1146	16	83			0.994512
1148	16		83		0.994512
1149	83			16	0.994512
1150			83	16	0.994512
1246	20	80			0.995493
1249		80	20		0.995493
1250	80			20	0.995493
1294		20		80	0.995493
1312	25	25			0.995533
1421	33		66		1.0
1917	40		60		1.0
2113			66	33	1.0
2114	66		33		1.0
2115	83		16		0.994512
2116	50		33	16	1.0
2117			66	33	1.0
2118	66		33		1.0
2122	33	66			1.0
2123	66		33		1.0
2125		33		50	1.0
2127	33	50			1.0
2131		33		50	1.0
2132	33	50			1.0
2134	25			75	0.996473
2135		25		75	0.996473
2140		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain