SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6085

Length: 2440 nt

UniGene Fasta

>sp_v3.0_unigene6085
CGTTTTGCGAGTTTAAATTTAGGCCCATTGATTGTTTGTCATATATTGTGTTTTGTCTGGTTATTTTGCTAGAGTAGGAGTAATGGAATCGTCTTGCAGTTCAATGAATTCCAGCAGTCCTTCCACGGGGAAGCGATGTCTCCGTCCTCTGCAGAAACAGGGTGCTTCAATGAATAAACGCAGCAGCGACAGATTTATCCCGGCAAGAGGATCCATCGATTTGGAGGTAGCTAGATTCATGATCACGCAGAAGCAAAAAGGACAATGACGATACCCATGCCCTCTCCCCTTCCCCCTCCCCTTCCAGAAAAGCATACAAGAAGGAGATGGCAGCCACTTTTATTGAAGAATGCCGGTGCTGCTGACAACAATTACAGAATTCTTTCTTTCAATGGAAAATCATCGACTGTTTACCAAGCTTCACAAGAAAATGTGTTGGCTAATCTCCCTATTTCTAGAAGAGCACGCAGATATATTCCTCAGTCTGCAGATAGAACCCTGGATGCGCCCAACCTTCTGGATGATTATTACTTGAATCTATTGGATTGGAGTTCCACCAATGTTTTGTCCATAGCCCTGGACAACACTGTATACTTGTGGGATGCTTCTGATAGCTCTATATCTGAGCTTCTGATTGCAGATGAAGAAGAGGGTCCCGTTACAAGCGTTAGTTGGGCACTCGATGGGACGCAAATTGCCGTTGGGTTGAATAATTCTGTTGTACAGTTATGGGACTCGCAATCTAATAAAAAGGCTAAGAGCCTTGAAAGGTCATCATGAACGTGTTGGTGCACTTGCTTGGAATGGTCCTATTCTCACCACAGGAGGGCTGGATGGGATTATAATCAATCATGATGTTCGCATCCGTGACCACATTGTTCAAACATATAGAGGACATACCCAGGAGGTTTGTGGATTGAAATGGTCTCCTTCTGGCCAACAACTTGCAAGTGGGGGAAATGACAATCTGCTCTACATTTGGGACAAGAGCATGGCATCCCATAATCCTTCCTCTCAATACTTCCACCAATTAGATGAACATTGTGCGGCAGTCAAGGCCTTGGCATGGTGCCCCTTCCAGAACAATCTTTTGGCATCTGGTGGAGGGAGTTCAGACGGTTCTATAAAGTTTTGGAACACTCAAACAGGTGCATGCCTGAATACCGTCGACACCCATTCCCAAGTCTGTTCATTGCTGTGGAATAGACATGAGCGTGAGTTATTGAGTTCGCATGGGCCAAATCAGAACCAGTTAACCTTATGGAAATACCCATCCATGGTGAAAATTACTGAACTTACAGGGCATACTGCTAGAGTTCTTCATATGGCACAGAGTCCTGATGGGTACACAGTTGCATCAGCTGCAGCAGATGAAACACTCAGGTTTTGGCAAGTTTTTGGGGCTCCCGATGCCTTAAAGAAGACTAAGACTAAAGATGCAAAAGGGGCTTTCAACATGTTTCATACTCACATCCGCTAAGAAGTATCTGTCCAAATTCATGGAATCAGGATGGATGTTCAAGTGAAGGTACTTTGTGAGGCAATGATCCATGTCTTCAGCTGCGTGATAAGCTTTAAAGTGGTTTTGGCAAGTCTTTGGAGCTTCAAAGACGGTTCAAAAAATGATGCTTTATGGCTGTTAACAAGTATCTGATTCACATCTATAAAATGGCCTCCATGCTTCTACACATGGAATGATGATGAGGGGATGCTCAATGTTGCAGATCGTTTAAGGTGCCTTTAAGGAACATGGGATCTTGCCAGCATTCTAAGACTTTCGAGGATGGGTTCAACTCTCCGAAGAAGAATCATACAGAGAAGAGCAGCATGGTTCCTCAATTGCATTTTTTTAATGTCAAAATCCTAAGGTGCACTCTTCTGTTATTGGTTCTGTACTTAGCTAGTTGCACTATAATTTCCCGGCACAATTAAATTAGTAAGTATTTCTGGTTGATATTATATGTGCTTCATCTTTATTATCTTTTATGGCATGAATTGTCTTGTAATTTCATTTTATTGTATTTCATTATTCACTGACAATTGCCTCATTGTAGCTCCTCCCTCTTCCCTTTGGGCATTGATAATCAATGTATATTGATGTATGCCCCATAATCTTCCAACGGCATTTTTTAATGCCACCATTCGAAAGGAAAATTTTCCACCCTTCAACTTCTTCAATTGAAGTCTTTATGGGATTAATGTTCAAGGCATTGGGAATATCGGAGATACAGGAAAAAAAATGTTGATCAGCAGCGTCCATTACTTCAAAGCTTTTGATAATTTTTTTGAAAGGGCAATGCCTGTCTGTGGATATAAATCCAAGTGTTTAGATACAGGTTTTCTGAAAATAGTTTAACTTTCAAAACTCTATTGTTATTTTGGTGCTTAGGGTTTTGAATTACAATTTTGCATTGAATCAAAAAGCCAAAAGTTCAGCTTG

Ace file of the UniGene sp_v3.0_unigene6085

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cell division cycle, putative n=1 Tax=Ricinus communis RepID=B9S1Y4_RICCO	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	Cell division cycle, putative	-	-	1.19e-09	-

Source	Gene names
Sma3	AT4g33260; AT4g33270; At4g11920; At4g22910; At4g33260; At4g33270; At4g33270/F17M5_30; At5g13840; At5g26900; At5g27570; At5g27945; CCS52; CCS52A1; CCS52A2; CCS52B; CDC20; CDC20.1; CDC20.2; CDC20.3; CDC20_1; CDH1; CDH1-CCS52; CHLREDRAFT_130713; CHLREDRAFT_3

Source	GOs	Term	Type	Identity
Sma3	mitosis	GO:0007067	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	cell growth	GO:0016049	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	positive regulation of DNA endoreduplication	GO:0032877	Biological Process	-
Sma3	DNA endoreduplication	GO:0042023	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G33260.1	CDC20.2 Transducin family protein / WD-40 repeat family protein chr4:16041233-16043180 REVERSE LENGTH=447	76%
RefSeq	Arabidopsis thaliana	NP_195052.1	cell division cycle 20, cofactor of APC complex [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002325348.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX8

Fln msg: Overlapping hits, possible frame ERROR between 765 and 749, Unexpected stop codon in the beginning of your sequence,

Fln protein: RFASLNLGPLIVCHILCFVWLFC*SRSNGIVLQFNEFQQSFHGEAMSPSSAETGCFNE*TQQRQIYPGKRIHRFGGS*IHDHAEAKRTMTIPMPSPLPPPLPEKHTRRRWQPLLLKNAGAADNNYRILSFNGKSSTVYQASQENVLANLPISRRARRYIPQSADRTLDAPNLLDDYYLNLLDWSSTNVLSIALDNTVYLWDASDSSISELLIADEEEGPVTSVSWALDGTQIAVGLNNSVVQLWDSQSNxxxxxxxKGHHERVGALAWNGPILTTGGLDGIIINHDVRIRDHIVQTYRGHTQEVCGLKWSPSGQQLASGGNDNLLYIWDKSMASHNPSSQYFHQLDEHCAAVKALAWCPFQNNLLASGGGSSDGSIKFWNTQTGACLNTVDTHSQVCSLLWNRHERELLSSHGPNQNQLTLWKYPSMVKITELTGHTARVLHMAQSPDGYTVASAAADETLRFWQVFGAPDALKKTKTKDAKGAFNMFHTHIR*

Protein Length: 495

Fln nts: CGTTTTGCGAGTTTAAATTTAGGCCCATTGATTGTTTGTCATATATTGTGTTTTGTCTGGTTATTTTGCTAGAGTAGGAGTAATGGAATCGTCTTGCAGTTCAATGAATTCCAGCAGTCCTTCCACGGGGAAGCGATGTCTCCGTCCTCTGCAGAAACAGGGTGCTTCAATGAATAAACGCAGCAGCGACAGATTTATCCCGGCAAGAGGATCCATCGATTTGGAGGTAGCTAGATTCATGATCACGCAGAAGCAAAAAGGACAATGACGATACCCATGCCCTCTCCCCTTCCCCCTCCCCTTCCAGAAAAGCATACAAGAAGGAGATGGCAGCCACTTTTATTGAAGAATGCCGGTGCTGCTGACAACAATTACAGAATTCTTTCTTTCAATGGAAAATCATCGACTGTTTACCAAGCTTCACAAGAAAATGTGTTGGCTAATCTCCCTATTTCTAGAAGAGCACGCAGATATATTCCTCAGTCTGCAGATAGAACCCTGGATGCGCCCAACCTTCTGGATGATTATTACTTGAATCTATTGGATTGGAGTTCCACCAATGTTTTGTCCATAGCCCTGGACAACACTGTATACTTGTGGGATGCTTCTGATAGCTCTATATCTGAGCTTCTGATTGCAGATGAAGAAGAGGGTCCCGTTACAAGCGTTAGTTGGGCACTCGATGGGACGCAAATTGCCGTTGGGTTGAATAATTCTGTTGTACAGTTATGGGACTCGCAATCTAATxxxxxxxxxxxxxxxxxxxxxAAAGGTCATCATGAACGTGTTGGTGCACTTGCTTGGAATGGTCCTATTCTCACCACAGGAGGGCTGGATGGGATTATAATCAATCATGATGTTCGCATCCGTGACCACATTGTTCAAACATATAGAGGACATACCCAGGAGGTTTGTGGATTGAAATGGTCTCCTTCTGGCCAACAACTTGCAAGTGGGGGAAATGACAATCTGCTCTACATTTGGGACAAGAGCATGGCATCCCATAATCCTTCCTCTCAATACTTCCACCAATTAGATGAACATTGTGCGGCAGTCAAGGCCTTGGCATGGTGCCCCTTCCAGAACAATCTTTTGGCATCTGGTGGAGGGAGTTCAGACGGTTCTATAAAGTTTTGGAACACTCAAACAGGTGCATGCCTGAATACCGTCGACACCCATTCCCAAGTCTGTTCATTGCTGTGGAATAGACATGAGCGTGAGTTATTGAGTTCGCATGGGCCAAATCAGAACCAGTTAACCTTATGGAAATACCCATCCATGGTGAAAATTACTGAACTTACAGGGCATACTGCTAGAGTTCTTCATATGGCACAGAGTCCTGATGGGTACACAGTTGCATCAGCTGCAGCAGATGAAACACTCAGGTTTTGGCAAGTTTTTGGGGCTCCCGATGCCTTAAAGAAGACTAAGACTAAAGATGCAAAAGGGGCTTTCAACATGTTTCATACTCACATCCGCTAAGAAGTATCTGTCCAAATTCATGGAATCAGGATGGATGTTCAAGTGAAGGTACTTTGTGAGGCAATGATCCATGTCTTCAGCTGCGTGATAAGCTTTAAAGTGGTTTTGGCAAGTCTTTGGAGCTTCAAAGACGGTTCAAAAAATGATGCTTTATGGCTGTTAACAAGTATCTGATTCACATCTATAAAATGGCCTCCATGCTTCTACACATGGAATGATGATGAGGGGATGCTCAATGTTGCAGATCGTTTAAGGTGCCTTTAAGGAACATGGGATCTTGCCAGCATTCTAAGACTTTCGAGGATGGGTTCAACTCTCCGAAGAAGAATCATACAGAGAAGAGCAGCATGGTTCCTCAATTGCATTTTTTTAATGTCAAAATCCTAAGGTGCACTCTTCTGTTATTGGTTCTGTACTTAGCTAGTTGCACTATAATTTCCCGGCACAATTAAATTAGTAAGTATTTCTGGTTGATATTATATGTGCTTCATCTTTATTATCTTTTATGGCATGAATTGTCTTGTAATTTCATTTTATTGTATTTCATTATTCACTGACAATTGCCTCATTGTAGCTCCTCCCTCTTCCCTTTGGGCATTGATAATCAATGTATATTGATGTATGCCCCATAATCTTCCAACGGCATTTTTTAATGCCACCATTCGAAAGGAAAATTTTCCACCCTTCAACTTCTTCAATTGAAGTCTTTATGGGATTAATGTTCAAGGCATTGGGAATATCGGAGATACAGGAAAAAAAATGTTGATCAGCAGCGTCCATTACTTCAAAGCTTTTGATAATTTTTTTGAAAGGGCAATGCCTGTCTGTGGATATAAATCCAAGTGTTTAGATACAGGTTTTCTGAAAATAGTTTAACTTTCAAAACTCTATTGTTATTTTGGTGCTTAGGGTTTTGAATTACAATTTTGCATTGAATCAAAAAGCCAAAAGTTCAGCTTG

Fln Alignment:

Contig6085___NNYRILSFNGKSS--TVYQAS---QENVLA-NLPISRRARRYIPQSADRTLDAPXXXXXXXXXXXXWSSTNVLSIALDNTVYLWDASDSSISELLIADEEEGPVTSVSWALDGTQIAVGLNNSVVQLWDSQSNxxxxxxKGHHERVGALAWNXXXXXXXXXXXXXXNHDVRIRDHIVQTYRGHTQEVCGLKWSPSGQQLASGGNDNLLYIWDKSMASHNPSSQYFHQLDEHCAAVKALAWCPFQNNLLAXXXXXXXXXIKFWNTQTGACLNTVDTHSQVCSLLWNRHERELLSSHGPNQNQLTLWKYPSMVKITELTGHTARVLHMAQSPDGYTVASAAADETLRFWQVFGAP
B8LPX8______________NLFRFKNDHGASSPGSPYSASPVGSEGLFSSNVGTPPKPARKITRSPYKVLDAPALQDDFYLNLVDWSSNNVLAVGLGTCVYLWSACTSKVTKLCDLGVNDS-VCSVGWTPQGTHLAVGTNIGEIQIWDASRCxxxxxxGGHCTRAGALAWSSYILSSGSRDRNILHRDIRVQDDFVRKLVGHKSEVCGLKWSYDDRELASGGNDNQLLVWNQQ------SSQPLLRFNEHTAAVKAIAWSPHQHGILASGGGTADRCLRFWNTATDTRLNCVDTGSQVCNLVWCKNVNELVSTHGYSQNQIMVWRYPSMSKLATLTGHTLRVLYLAISPDGQTIVTGAGDETLRFWNIFPSP

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
785		33		66	0.997452
890		42		57	1.0
892	28		71		1.0
899		42		57	1.0
921	85	14			0.993533
967	80		20		0.995493
971	20		80		0.995493
1082	33		66		0.997452
1153		66		33	1.0
1154	33	66			1.0
1167	16		83		0.994512
1169		83	16		0.994512
1189		16	83		0.994512
1206	88		11		0.992527
1207			88	11	0.992527
1214	22		77		1.0
1223	55		44		1.0
1253	12		87		0.993502
1258		87		12	0.993502
1274	75		25		1.0
1279		25		75	1.0
1291	25	75			1.0
1300		87		12	0.993502
1301	75		25		1.0
1302	25		75		1.0
1335	62		37		1.0
1355			25	75	1.0
1361	85	14			0.994477
1370	85		14		0.994477
1378	16	83			0.995451
1384			66	33	0.99834
1730	10		90		0.90298
1757	90		10		0.90298
1847	12			37	1.0
1848	50			37	1.0
1861	87	12			0.992554
2078	12		87		0.999964
2134		14		85	0.993533
2172	66	33			0.997452
2179	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain