SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6058

Length: 1923 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6058

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin-like F-box [Medicago truncatula]	-	-	0.0	55%
FL-Next	sp=F-box protein At2g32560; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Sma3	Cyclin-like F-box	-	-	5.817e-12	-

Source	Gene names
Sma3	At2g26850; At2g32560; At2g41170; B1085F09.18; F12C20.11; GSVIVT00017252001; GSVIVT00023247001; MtrDRAFT_AC150889g18v2; MtrDRAFT_AC150889g26v2; OSJNBa0036E02.18; Os01g0281000; Os01g0806200; OsI_01411; OsI_04131; OsJ_01321; OsJ_03804; P0003H10.29; P0702B09.

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32560.1	F-box family protein chr2:13824820-13826761 FORWARD LENGTH=371	58%
RefSeq	Arabidopsis thaliana	NP_850191.1	F-box protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002314008.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8RY82

Fln msg:

Fln protein: MSILSVWSVVGISKSLVQFIKNRSLIKLCTAMCLKRRCSQKVENVEEIQGLTLLDLPELALENILMRLSPASLCSTAGVCRDLRKRCTSDHLWELHIKAKWDKVVGTAARREWQWTVAMNAEAGISDGAKCKNWRFSWSCVWPFSWLNSKPGVKRKPKSDSQRESFMAWYIALETGSFWFPAQVYNRENGHVGFMLSCYDAELGYDRQTNTFNARYPPHGTRAAVIEDGVQWERIRAPPVDTPAHKLHASDCLDTLRPGDHIEVQWRRNKEFPYGWWYGVVGHLDSCDGYSHRCQCHLDDTAWLEFNQYTAGSRWRRAPINRKCHRESGSEAEGFYGGIRKLLTKEEISTWKQLWPNESLE*

Protein Length: 363

Fln nts: ATAAGCCCAAATGTTTATTTATTGTTTTCGTGGGAACCAAAAGTGTCTTCCTGGAGGGAGCATTGCTGGTTTGTTTGGACACTAGTGTATATTTCCTATACACCCACAAGGAGAAACACTGAAAATTTTGCAGGAGAATCAAGTCTTTTAATAGATAAAAAGTACCCAATGACTAGAAATTCCTCCTGAAGATGAAGAAAGTTTGATCAGTTGCTAATTAAGCTAATGTTCTATACATATCTCGTTATGGTTTGGATTCCTGCTGGAATGATGTTGCCTTGAAACATCTTTAAGATTGCCTGCCACTGTCGTTCCATTTGCCTTGCGGATTTTCTTCCGAGTCAAGAATGAG_-_ATGAGCATTCTTTCTGTTTGGTCTGTTGTTGGAATCTCAAAGTCACTTGTGCAGTTCATTAAGAATAGAAGTTTGATCAAATTGTGTACTGCAATGTGCTTGAAGCGAAGATGTTCTCAGAAAGTAGAGAACGTAGAAGAGATACAGGGCTTGACTCTTCTAGATCTACCTGAACTGGCACTTGAAAACATATTGATGAGACTGTCCCCAGCTAGTCTCTGTAGCACTGCAGGTGTTTGCAGAGATCTGAGGAAGAGGTGCACAAGCGACCATCTTTGGGAACTCCATATCAAAGCAAAATGGGATAAGGTTGTAGGAACAGCAGCCCGAAGGGAATGGCAGTGGACAGTTGCAATGAATGCAGAGGCAGGGATTTCGGATGGTGCAAAATGCAAGAATTGGCGTTTTTCATGGTCTTGCGTATGGCCCTTTTCATGGCTCAATTCAAAGCCGGGCGTGAAAAGGAAACCAAAAAGTGATTCACAACGCGAGTCGTTCATGGCATGGTATATAGCACTTGAAACTGGCAGTTTTTGGTTCCCAGCACAGGTGTATAATCGTGAGAATGGACATGTTGGGTTTATGCTATCATGCTATGATGCAGAACTTGGTTATGACCGACAAACTAACACCTTTAATGCAAGGTATCCACCACATGGTACCCGTGCTGCTGTTATTGAGGATGGGGTACAATGGGAGAGAATCCGTGCACCTCCAGTGGACACACCTGCTCATAAGCTTCATGCCTCTGATTGCTTGGACACCTTACGTCCTGGGGATCACATTGAGGTTCAATGGAGGAGGAACAAGGAATTCCCATACGGATGGTGGTACGGTGTTGTGGGCCACTTGGACTCTTGTGATGGATATAGTCATCGCTGTCAGTGTCATTTAGATGATACCGCATGGCTGGAATTCAATCAGTATACCGCTGGTTCTCGATGGAGGCGTGCCCCAATCAATAGGAAGTGTCATCGTGAATCAGGAAGTGAGGCCGAAGGATTTTATGGAGGAATACGGAAGTTATTAACAAAGGAGGAGATTTCAACTTGGAAGCAGTTGTGGCCCAATGAATCCTTAGAATAA___GCTCATTGCATATTTACCTCACCCTCAATCACCTATTGCATCTGGGGTGGCAGAAAGACTGTCATTATTTGATTATTTTTGGTGGTGTGATTGATACAGGACATGGATGTCAAATTGCCATTGACAGACTTAATTTTAACTTCTCATTTGTGCGACACCCTTATCAGATTACACAGTTCTTTGCATGGATTTACCATGAACTGTTCCACACTAAGGCTAGTGTGGACTTCGCAGATAATCAGATACATGGGGACCCTGGGCTTATTTTATCTCTACCCTTGAAATAGGTGGCATTCCACATGCATGCTTAGAATAAATGTAGTCAGCATGGTCACCTAATGAACAATTAATTATTTGGGGGCATGTTTAAGATCTCTTGTACCATATGTAGCTCAGCCTGAAAATCTTGCTGCAGCTGTGAACACTATTGATTGATGCGTGGCATAACATAATATAATCACTTCGAAGGTCTGCTTACCTTTACT

Fln Alignment:

Contig6058___LSPASLCSTAGVCRDLRKRCTSDHLWELHIKAKWDKVVGTAARREWQWTVAMNAEAGISDGAKCKNWRFSW--SCVWPFSWLNSKPGVKRKPKSDSQRESFMAWYIALETGSFWFPAQVYNRENGHVGFMLSCYDAELGYDRQTNTFNARYPPHGTRAAVIEDGVQWERIRAPPVDTPAHKLHASDCLDTLRPGDHIEVQWRRNKEFPYGWWYGVVGHLDSCDGYSHRCQCHLDDTAWLEFNQYTAGSRWRRAPINRKCHRESGSEAEGFYGGIRKLLTKEEISTWKQLWPNESLE
Q8RY82______________LPPSGLCSMARVCSSLRERCVSDHLWEKHLKTKWGKILGPAAHREWQCYISSSTYHLDSPHHQTGNLGFAKIISLIRSLSSVFREDKQRRGYASSLPLDSSMSCYLSLETGRFWFPAQVYNRENGHVGFMLSCYDAELSYDTHTDTFQARYPPHGRRASAIEKGVTWDRIRAAPIDASPHLLHVSDSLKELKPGDHIEIQWRRNKEFPYGWWYGLVRHLESCDGDHNHCHCHLSETVVLEFNQYTVGSRWRRTMIMRD-HKEEGNEEDGFYGGIRKLNCKEEIAMWKRHWPCSILE

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
652	90			10	0.90298
653	90		10		0.90298
654			10	90	0.90298
826	80			20	0.995493
827	80		20		0.995493
828	80			20	0.995493
854			83	16	0.994512
943	33	66			0.997452
981			25	75	0.996473
982	75		25		0.996473
983	75		25		0.996473
996	83		16		0.994512
998			83	16	0.994512
1141	12		87		0.992554
1155	12		87		0.992554
1162	87		12		0.992554
1267	12		87		0.992554
1268	87	12			0.992554
1414	16			83	0.994512
1417			16	83	0.994512
1477			20	80	0.995493
1479		83	16		0.994512
1480	83		16		0.994512
1485	16		83		0.994512
1486		16	83		0.994512
1487		16	83		0.994512
1492	83			16	0.994512
1494	80			20	0.995493
1495	80	20			0.995493
1496	83	16			0.994512
1497		16	83		0.994512
1498	66			33	1.0
1500	16			83	0.994512
1502	16			83	0.994512
1504	83	16			0.994512
1508			16	83	0.994512
1509		16		83	0.994512
1514		16		83	0.994512
1517	16			83	0.994512
1917	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain