SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6056

Length: 2692 nt

UniGene Fasta

>sp_v3.0_unigene6056
ATGGGACTTTACATTTCTTTTGATTGATTCGTTGGATTTAACTGGAGCGGATTTTGTATGCACTTGAGACCAGTTTTATGGGGTGTCAGCTGGCCACGACAGACCACTAGATTGCCCTTGCCTGTCTGTGCTCGTCATCTGCCTGAGAGGGAATGAAAAATATTTGCATGTTTATGAGAACCCATCTGGTTTAATTTAATGTTTAAGCATGGTAAGTGTTGCAGAGTGGAAGGATTTTCCTAAAGGCCTCAGGGTTCTGGTGTTGGATGAGGACTCTGAGGCAGCTGCTGAAACTAAGTCCAGACTGGAAGGCTTTGAATACGTTGTTTCCACCTTCTCCAACGAAACAGAGGCATTGGCTGTGCTTGCAAATGAGACGAATTCATTCCATGTTGCTTTGGTTGAGGTGAGCACAGGTAACAGCTGTGGCGGTTTTAGGTTCCTACAGACTGCCTGCAATATACCAACCGTTATGATGTCAAACAGGAGCTGCCTGAGCACAACGATGAAGTGCATAGCACTGGGAGCATCAGAGTTCCTACAGAAACCAATATCTGAGGACAAGCTCAAAAATATTTGGCAACATGTGGTTCACAAGGCATTCAGTGAGAGTGGCACTGTGCTTTCAGAGTCTCTTAAACCAGTTAAAGCAACGATTGTATCCATGCTTCAACTGGGGCACAAGCATGATAATGTTAAGAGTAAAAGCTCTCAAAATGGAGATTCATTTGTTGGAAACAAAGTTGAGGCCGGTGCTCTACATAAGGTACAGTCTTGCATGCCAACTCGCACAGATTCTATAAAACAAGAGTCAAGCATTGAACCCTGTAATAGTGAGAAATTTCCAGCTCCATCTACTCCTCAACTAGAACAAGGAGGTAGATCTCCCTCTGAGGAGGATAAAACACTTAGATTAGACGATGCCACAAACTTAATGGTTGGACCAGCGCATCCTGACACTAATTGTGGGGATGAAACTATTAGAGAAGTGAGATTAGATGCTGAAGCAACATCAACCTGGTCATCTCAAGTTGATAGCCCAGCATCTGTAAAGAAAGAAAGTCAAGACATGTATAGAATATCACTGAAAGCAAGAATTAGCACCCAATCTGGGGTAAAACCTGCTGATTTAACAAGGGACCAGTTAGGGAATGGAATTACTTCTAGGGGTACCAGTTTACACTCCAGGCAGGAGACTGCAGATGTGCATGTAGTTAGTGCTTCTGGTATTACAGAAGAGGAAGTGGGTTCTGCTGAAGGTTCAAAGAGTGATGATGAGAATATTGAGACAGAAGCTATATTGTCTTCTTATGTTTGTAATGAAGAGAATGTAGATTCCAGTACGGAAAATATCAAGGAAAAAAGGAATAGCGCAGAGCATGGTTGCAAAAAGTCGAATATTTCTTCTAGCAAGAAAAAGTTTAAGGTAGAATGGACAATGGACCTGCATCGGCGTTTTGTGCAAGCAGTGGAGCAACTTGGAGTTGATCAGGCAATCCCTTCAAGAATTTTGGACCTTATGAAAGTGGATGGCTTAACTCGGCATAATGTTGCTAGCCACTTACAGAAATATCGTTCTCACAGAAGGCACATTTTGCCAAGGGATGATGAACTTGCAAGCAGGCGATATTGGCAGCATTTTGACCCTGCCTGGACTAGAACTACGCAAGATGAATCTTGGAGTCGTACAGGGAATCCTGCTTCTGGACCAATTCTTGCATATTCACCAGTTCAGTTACATTCTACACCACAAGGGACTCCTGTGGGCCCACCTCTTCATGTTTGGGGACATCCCACTATAGATCAATCAGGTAGTCACATGTGGCAGCAACTTCAAGTGGGGACTCCTACTACATGGCAAGCACAAGATGGTTCTTTCTGGAAACATCCAGGGGTATATGCTGATGCTTGGGGTTGCCCCACAGTTGGGATGCCATTCTACCCCAACCCATGATGCCAAAGGAGGTAATTGATGAAGCTTTTAAAGAGGCTTTAAATAACCCTTGGACACCTCTTCCTCTGGGCCTTAAACCTCCATCAATGGAGAGTGTTATGGCAGAGCTCCAGAGGCAAGGCATTAATAAAATTCCACCGCCTGCTTCATAAGCAGTCATTAGCATGCAGATGGAAAGTCAAACAGTTTGGAATGAAATGGGAATCTAACCAATAACAAGTCTCCCCTGTCAGATCAGAATTGATCCTTTGCTACGTGCTTGTATATTTCTGCATTTCAATGCTACAGAATTTCCCCTTGCTTCTCTGCAAAAAGTGCTAATTTTTGCTGAGAGAGATTATATGCACCTTACATGGTCCAACCTTTTATCAAGGCAGTCATTGAGGAATGCATCAAGTGAAGAAAAAACAAGCTCTGCAAAGGAAACATTTGTAAGATCTCGGCCTAAGCACTCCCTGCAATATCATGTTAGAGGCCTCTGAAGCCACTGGTTGAGAGTATCATGTTAGGCTATAGAGGTGTTTAGAGCTACCTGGTTAAGAGTGAGCTTCTTGGCATTGATCATTTAACCAGTGTGCTTTTTGCATGGCCCGTTTCTCCAAGTGTAGCATTTTGAATTTTATTTTCCAAACTTTCGTTGAATAGTTTATACTGGGCAAGCCTACAAAGCCCACTATTTCAGTGATTTGCAATGTAGGGCCAAAATATTAATATTCAACCTTTGGAATTATTTCTACC

Ace file of the UniGene sp_v3.0_unigene6056

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	two-component response regulator-like APRR2 [Arabidopsis thaliana] ref\|NP_849403.1\| two-component response regulator-like APRR2 [Arabidopsis thaliana] ref\|NP_849404.2\| two-component response regulator-like APRR2 [Arabidopsis thaliana] ref\|NP_001190759.1\|	-	-	0.0	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%

Source	Gene names
Sma3	GSVIVT00015824001; GSVIVT00015883001; Glk1; Glk2; ORR2; OSJNBb0036B04.15; Os06g0183100; OsI_21925; OsJ_20357; PHYPADRAFT_178653; PHYPADRAFT_61021; POPTRDRAFT_741543; POPTRDRAFT_827668; PtpRR10; RCOM_1277790; VITISV_005486;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Response regulator, plant B-type	IPR017053	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PRL2

Fln msg: Separated hits, possible frame ERROR between 1951 and 1960, your sequence is longer than subject: 633 - 400

Fln protein: MVSVAEWKDFPKGLRVLVLDEDSEAAAETKSRLEGFEYVVSTFSNETEALAVLANETNSFHVALVEVSTGNSCGGFRFLQTACNIPTVMMSNRSCLSTTMKCIALGASEFLQKPISEDKLKNIWQHVVHKAFSESGTVLSESLKPVKATIVSMLQLGHKHDNVKSKSSQNGDSFVGNKVEAGALHKVQSCMPTRTDSIKQESSIEPCNSEKFPAPSTPQLEQGGRSPSEEDKTLRLDDATNLMVGPAHPDTNCGDETIREVRLDAEATSTWSSQVDSPASVKKESQDMYRISLKARISTQSGVKPADLTRDQLGNGITSRGTSLHSRQETADVHVVSASGITEEEVGSAEGSKSDDENIETEAILSSYVCNEENVDSSTENIKEKRNSAEHGCKKSNISSSKKKFKVEWTMDLHRRFVQAVEQLGVDQAIPSRILDLMKVDGLTRHNVASHLQKYRSHRRHILPRDDELASRRYWQHFDPAWTRTTQDESWSRTGNPASGPILAYSPVQLHSTPQGTPVGPPLHVWGHPTIDQSGSHMWQQLQVGTPTTWQAQDGSFWKHPGVYADAWGCPTVGMPFYPNxxxxKEVIDEAFKEALNNPWTPLPLGLKPPSMESVMAELQRQGINKIPPPAS*

Protein Length: 634

Fln nts: ATGGGACTTTACATTTCTTTTGATTGATTCGTTGGATTTAACTGGAGCGGATTTTGTATGCACTTGAGACCAGTTTTATGGGGTGTCAGCTGGCCACGACAGACCACTAGATTGCCCTTGCCTGTCTGTGCTCGTCATCTGCCTGAGAGGGAATGAAAAATATTTGCATGTTTATGAGAACCCATCTGGTTTAATTTAATGTTTAAGC_-_ATGGTAAGTGTTGCAGAGTGGAAGGATTTTCCTAAAGGCCTCAGGGTTCTGGTGTTGGATGAGGACTCTGAGGCAGCTGCTGAAACTAAGTCCAGACTGGAAGGCTTTGAATACGTTGTTTCCACCTTCTCCAACGAAACAGAGGCATTGGCTGTGCTTGCAAATGAGACGAATTCATTCCATGTTGCTTTGGTTGAGGTGAGCACAGGTAACAGCTGTGGCGGTTTTAGGTTCCTACAGACTGCCTGCAATATACCAACCGTTATGATGTCAAACAGGAGCTGCCTGAGCACAACGATGAAGTGCATAGCACTGGGAGCATCAGAGTTCCTACAGAAACCAATATCTGAGGACAAGCTCAAAAATATTTGGCAACATGTGGTTCACAAGGCATTCAGTGAGAGTGGCACTGTGCTTTCAGAGTCTCTTAAACCAGTTAAAGCAACGATTGTATCCATGCTTCAACTGGGGCACAAGCATGATAATGTTAAGAGTAAAAGCTCTCAAAATGGAGATTCATTTGTTGGAAACAAAGTTGAGGCCGGTGCTCTACATAAGGTACAGTCTTGCATGCCAACTCGCACAGATTCTATAAAACAAGAGTCAAGCATTGAACCCTGTAATAGTGAGAAATTTCCAGCTCCATCTACTCCTCAACTAGAACAAGGAGGTAGATCTCCCTCTGAGGAGGATAAAACACTTAGATTAGACGATGCCACAAACTTAATGGTTGGACCAGCGCATCCTGACACTAATTGTGGGGATGAAACTATTAGAGAAGTGAGATTAGATGCTGAAGCAACATCAACCTGGTCATCTCAAGTTGATAGCCCAGCATCTGTAAAGAAAGAAAGTCAAGACATGTATAGAATATCACTGAAAGCAAGAATTAGCACCCAATCTGGGGTAAAACCTGCTGATTTAACAAGGGACCAGTTAGGGAATGGAATTACTTCTAGGGGTACCAGTTTACACTCCAGGCAGGAGACTGCAGATGTGCATGTAGTTAGTGCTTCTGGTATTACAGAAGAGGAAGTGGGTTCTGCTGAAGGTTCAAAGAGTGATGATGAGAATATTGAGACAGAAGCTATATTGTCTTCTTATGTTTGTAATGAAGAGAATGTAGATTCCAGTACGGAAAATATCAAGGAAAAAAGGAATAGCGCAGAGCATGGTTGCAAAAAGTCGAATATTTCTTCTAGCAAGAAAAAGTTTAAGGTAGAATGGACAATGGACCTGCATCGGCGTTTTGTGCAAGCAGTGGAGCAACTTGGAGTTGATCAGGCAATCCCTTCAAGAATTTTGGACCTTATGAAAGTGGATGGCTTAACTCGGCATAATGTTGCTAGCCACTTACAGAAATATCGTTCTCACAGAAGGCACATTTTGCCAAGGGATGATGAACTTGCAAGCAGGCGATATTGGCAGCATTTTGACCCTGCCTGGACTAGAACTACGCAAGATGAATCTTGGAGTCGTACAGGGAATCCTGCTTCTGGACCAATTCTTGCATATTCACCAGTTCAGTTACATTCTACACCACAAGGGACTCCTGTGGGCCCACCTCTTCATGTTTGGGGACATCCCACTATAGATCAATCAGGTAGTCACATGTGGCAGCAACTTCAAGTGGGGACTCCTACTACATGGCAAGCACAAGATGGTTCTTTCTGGAAACATCCAGGGGTATATGCTGATGCTTGGGGTTGCCCCACAGTTGGGATGCCATTCTACCCCAACCCxxxxxxxxxAAAGGAGGTAATTGATGAAGCTTTTAAAGAGGCTTTAAATAACCCTTGGACACCTCTTCCTCTGGGCCTTAAACCTCCATCAATGGAGAGTGTTATGGCAGAGCTCCAGAGGCAAGGCATTAATAAAATTCCACCGCCTGCTTCATAA___GCAGTCATTAGCATGCAGATGGAAAGTCAAACAGTTTGGAATGAAATGGGAATCTAACCAATAACAAGTCTCCCCTGTCAGATCAGAATTGATCCTTTGCTACGTGCTTGTATATTTCTGCATTTCAATGCTACAGAATTTCCCCTTGCTTCTCTGCAAAAAGTGCTAATTTTTGCTGAGAGAGATTATATGCACCTTACATGGTCCAACCTTTTATCAAGGCAGTCATTGAGGAATGCATCAAGTGAAGAAAAAACAAGCTCTGCAAAGGAAACATTTGTAAGATCTCGGCCTAAGCACTCCCTGCAATATCATGTTAGAGGCCTCTGAAGCCACTGGTTGAGAGTATCATGTTAGGCTATAGAGGTGTTTAGAGCTACCTGGTTAAGAGTGAGCTTCTTGGCATTGATCATTTAACCAGTGTGCTTTTTGCATGGCCCGTTTCTCCAAGTGTAGCATTTTGAATTTTATTTTCCAAACTTTCGTTGAATAGTTTATACTGGGCAAGCCTACAAAGCCCACTATTTCAGTGATTTGCAATGTAGGGCCAAAATATTAATATTCAACCTTTGGAATTATTTCTACC

Fln Alignment:

Contig6056___EEEVGSAEGSKSDDENIETEAIL----SSYVCNEENVDSSTENIKEKRNSAEHGCXXXXXXXXXXXXXVEWTMDLHRRFVQAVEQLGVDQAIPSRILDLMKVDGLTRHNVASHLQKYRSHRRHILPRDDELASRRYWQHFDPAWTRT-TQDESW-SRTGNP--ASGPILAYSPVQLHSTPQGTPVGPPLHVWGHPTIDQSGSHMWQQLQVGTPTTWQAQDGSFWKHPGVYADAW--GCPTVGMPFYPNPxxxKEVIDEAFKEALNNPWTPLPLGLKPPSMESVMAELQRQGINKIPPPAS
C0PRL2______________EEALLLAEVSKAETQTQQLMADLPDTNNSTISSDISVKEELSSEGKKTNGREASKLTSKTSHGKRKIKVDWTQDLHRRFVQAVEQLGVEKAVPSRILELMGVNCLTRHNIASHLQKYRSHRKHLLAREAEAAT---WNHRRQLYATTGTRARPWIGQNGNPLIQPRPSIGFPPM----APASHAPFRPLHVWGHPTVDHSSVHMWQKHSMPAPAPWPSPDGYFWQQTTACTNPWDHNAPASGTPLYPQPxxxKEKVDAAINEVLSNPWTPLPLGLKSPSLESVMAELQRQGIRDVPPASA

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
693	85		14		0.993533
694	85		14		0.993533
705	90		10		0.90298
706	90		10		0.90298
707	90		10		0.90298
712	10	90			0.90298
716	90			10	0.90298
717	90			10	0.90298
726	12			87	0.992554
804	87			12	0.992554
806	87			12	0.992554
807		87	12		0.992554
808	87		12		0.992554
809	87		12		0.992554
833		10		90	0.90298
835			90	10	0.90298
994		27	72		1.0
1111	12	87			0.992554
1112		12		87	0.992554
1167	75		25		0.996473
1366	33		33		0.997753
1417	75		25		0.996473
1491		85	14		0.993533
1492	85		14		0.993533
1650	15		84		0.999986
1666	16	83			0.999991
1667	16		83		0.999991
1811	90	10			0.90298
1823	10		90		0.90298
1824		10		90	0.90298
1825	10		90		0.90298
1826			90	10	0.90298
1827		90		10	0.90298
2093		80		20	0.995493
2163	40	60			1.0
2187		20		80	0.995493
2470		12		87	0.992554
2551	21		78		1.0
2611		12		87	0.992554
2694	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain