SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6051

Length: 1647 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6051

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methylthioribose-1-phosphate isomerase n=1 Tax=Nicotiana tabacum RepID=MTNA_TOBAC	-	-	0.0	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Translation initiation factor fusion with methylthioribose kinase	-	-	3.006e-09	-

Source	Gene names
Sma3	At2g05830; CHLREDRAFT_149134; GSVIVT00016416001; LOC_Os11g11050; MICPUCDRAFT_57554; MICPUN_54121; OSTLU_35743; Os11g0216900; OsIDI2; OsI_35550; OsJ_33377; Ot07g02130; PHATRDRAFT_23811; PHYPADRAFT_32989; POPTRDRAFT_832064; RCOM_0711420; THAPSDRAFT_35896; c

Source	GOs	Term	Type	Identity
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	isomerase activity	GO:0016853	Molecular Function	-
Sma3	S-methyl-5-thioribose kinase activity	GO:0046522	Molecular Function	-
Sma3	methionine biosynthetic process	GO:0009086	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	cellular biosynthetic process	GO:0044249	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Initiation factor 2B-related	IPR000649	-	-
Sma3	Aminoglycoside phosphotransferase	IPR002575	-	-
Sma3	Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase	IPR005251	-	-
Sma3	Methylthioribose kinase	IPR009212	-	-
Sma3	Initiation factor 2B alpha/beta/delta	IPR011559	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G05830.1	NagB/RpiA/CoA transferase-like superfamily protein chr2:2229759-2231839 FORWARD LENGTH=374	66%
RefSeq	Arabidopsis thaliana	NP_027726.1	NagB/RpiA/CoA transferase-like protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002308521.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABV6

Fln msg:

Fln protein: MAAELKQNGEDSTLQSIRYSRGRLQLLDQRKLPHDSVYIDIQDSTAGWHAIHDMVVRGAPAIAISAALSLAVEVANLGPVDWSVNDAISFLQNRLEFLVSSRPTAVNLSDAATKLNEVVLKAANDMSKPEAIFQAYIEAAEVMLMADINDNKAIGSNGAKFILSQHQKRHNLHVLTHCNTGSLATAGYGTALGVIRALHSEGLLETAFCTETRPYNQGSRLTAYELIHEHIPAVLVADSAAAALQKSGRVDAIVVGADRIAENGDTANKIGTYNLAISAFHHGIPFYVAAPLTSVDLSLSSGEQIIIEERSPKELTHALGGQGQQVAPSGISVWNPAFDVTPANLITAIITEKGVITKKDSSSTFDIKGFVESFRVPITTETNI*

Protein Length: 386

Fln nts: ATGGGGATAAAAAAAACATGGGAATCGTTTTCGATGAGTCTGCAAACACGGTATATTCGCATTTATTTGTTCCAATCTCTCGCAAAGAGACAACCTGATCTTATCTACTTGTTCCTCTAACTTCATCGATCATTTGTTTAAACGAGGCCTTACCGCAATTAAAATATTTTCAGTTAGACATTTGGATCACAGCATCTAAGTCTAAAGAAATAATCCTCCAAAAGCCTCAAACCGCGCTAAAGATCTGCGAA_-_ATGGCTGCTGAATTGAAGCAAAACGGGGAGGATAGTACTTTGCAGTCAATTCGATATTCGAGGGGTCGCTTGCAGCTTCTAGACCAGAGAAAGCTACCCCATGATTCTGTTTATATCGACATTCAAGATTCTACAGCAGGATGGCATGCTATACATGATATGGTGGTTCGTGGTGCCCCTGCAATTGCCATATCAGCTGCACTTTCACTAGCAGTAGAGGTTGCTAATTTGGGTCCAGTGGATTGGAGTGTGAATGATGCTATCTCATTTTTGCAAAACCGTTTAGAATTCCTTGTTTCTAGCCGTCCAACAGCAGTCAATCTTTCAGATGCTGCGACAAAGTTGAATGAAGTGGTGCTAAAGGCAGCCAATGATATGTCCAAACCTGAAGCTATTTTTCAGGCATATATTGAAGCTGCTGAAGTTATGCTGATGGCTGATATTAATGACAATAAAGCAATTGGTTCAAATGGGGCGAAGTTTATTCTAAGTCAACACCAGAAGCGTCACAATCTTCATGTTTTGACTCATTGCAACACGGGAAGCCTTGCAACAGCTGGATATGGTACTGCTCTTGGTGTCATTCGTGCCTTACACTCAGAGGGATTGCTGGAAACTGCTTTTTGCACAGAAACTCGACCATATAACCAGGGGTCGAGGCTTACTGCATATGAACTGATCCATGAACATATACCAGCAGTGCTCGTAGCAGATTCTGCAGCTGCTGCATTGCAAAAATCAGGTCGTGTAGATGCAATAGTTGTTGGGGCAGACAGAATTGCTGAAAATGGTGATACGGCAAACAAGATAGGAACATATAATCTGGCAATATCAGCTTTCCACCATGGTATACCGTTTTATGTAGCTGCTCCTTTGACCTCAGTTGATCTGTCTCTTTCCTCTGGTGAGCAAATAATAATTGAGGAGAGGTCACCAAAGGAATTAACTCATGCTCTTGGAGGCCAAGGGCAGCAGGTAGCTCCATCTGGGATCTCTGTTTGGAACCCTGCATTTGATGTGACTCCTGCAAATCTTATTACAGCCATTATTACTGAAAAGGGTGTCATTACAAAGAAGGATTCAAGCAGTACTTTCGACATAAAGGGATTTGTAGAGAGTTTTAGAGTACCTATTACAACGGAAACAAACATATGA___CGGCTGCTTAATCTAAGGATTTCAAGAACTTTAAACTCATTTTCAAAGAGAAAGAATGTATCAGAGACTCTACAATTGTTTTCTCTAACTTGTCAGTCATAAGTAGCAATATTGAGAAGCACTACTCTTCTTACAATTGAGAATGTTATGTGAAATTTGCAGTGCATTTTGTAGAATGCAAATCGTTCTAGTATTCTGAAATTTTATAATATAATGTTAAAGAGGTTATTCAAGATTTTTT

Fln Alignment:

Contig6051___MAAELKQNGEDSTLQSIRYSRGRLQLLDQRKLPHDSVYIDIQDSTAGWHAIHDMVVRGXXXXXXXXXXXXXXXXXNLGPVDWSVNDAISFLQNRLEFLVSSRPTAVNLSDAATKLNEVVLKAANDMSKPEAIFQAYIEAAEVMLMADINDNKAIGSNGAKFILSQHQKRHNLHVLTHCNTGSLATAGYGTALGVIRALHSEGLLETAFCTETRPYNQGSRLTAYELIHEHIPXXXXXXXXXXXXQKSGRVDAIVVGADRIAENGDTANKIGTYNLAISAFHHGIPFYVAAPLTSVDLSLSSGEQIIIEERSPKELTHALGGQGQQVAPSGISVWNPAFDVTPANLITAIITEKGVITKKDSSSTFDIKGFVESFRVPITTETNI
D5ABV6______________MASELKQNGEENTLQSIRYSRGRLQLLDQRKLPHDSVYIDIQDSTAGWHAIHDMVVRGAPAIAISAALSLAVEVANLGSVDWSVNDAISFLQKRLEFLVSSRPTAVNLSDAATKLNDVVLKATNDMSKPEAIFQAYVEAAEGMLIDDIDTNKAIGSNGAKFILSQTQKCHNLHVLTHCNTGSLATAGYGTALGVIRALHSEGLLETAFCTETRPYNQGSRLTAYELIHDHIPAVLIADSAAAALQKSGRVDAIIVGADRIAENGDTANKIGTYNLALSAFHHGIPFYVAAPLTSVDLSLSSGEQIIIEERSPKELTHALGGQGQQVAPSGISVWNPAFDVTPANLITAIITEKGVITKKDSSTTFDIKGFVESFALPLTNETNI

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
329	33			66	0.997452
331		66	33		0.997452
332			33	66	0.997452
333	66		33		0.997452
503		20		80	0.995493
958	11		88		0.923564
967		11		88	0.923564
985	11	88			0.923564
986	44	11			1.0
1162	90	10			0.90298
1183	10			90	0.90298
1539			48	51	1.0
1563	23			76	1.0
1637		33	8	58	1.0
1638	11	88			0.923564
1639	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain