SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6032

Length: 1374 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6032

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	65%
Sma3	Eukaryotic translation initiation factor 3 subunit, putative	-	-	1.934e-10	-

Source	Gene names
Sma3	AT4g28080; B1123E10.126; F6F3.12; F9L1.23; GSVIVT00000280001; GSVIVT00017134001; GSVIVT00027051001; OSJNBa0052K15.22-1; OSJNBa0070O11.2; OSJNBa0084P08.1; Os02g0255700; Os04g0645100; OsI_06619; OsI_17662; OsI_25780; OsJ_06127; OsJ_16398; OsJ_24005; P0613F0

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3		IPR013753	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:13948993-13957840 REVERSE LENGTH=1819	62%
RefSeq	Arabidopsis thaliana	NP_194537.7	tetratricopeptide repeat domain protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002308419.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HYM3

Fln msg: Distance to subject end: 428 aas, your sequence is shorter than subject: 458 - 1056

Fln protein: KSEAIAAMAAAKEATDKGDMTGMCPPSKLGQFYEFFSFSHLLPPIQFIRKSTRQSVEDKRPGDFFSIDVKLCNGKLVTVTACTKGFYSVGKQLVQSHALVNLLQQLSRAFANAYDCLMKAFSERNKFGNLPYGFRANTWVVPPVAADSPSVFPPLPVEDETWDGNGGGQGRDGKSDLRPWAREFSILAAMPCKTVEERQIRDRKAFLLHSLFVDVAVFKAVSAVQHVIDGKRSSDETKAHDPNIILHEETIGDLKISVRRDVPDASQKLDRKIDGSQAPGVSSRELAERNLLKGITADESTTVHDTATLGVVILKHCGYTAVVKVSGHTQTELESSPLDIDIEDQPEGGANALNVNSLRTLLHKGSRIQSNSGIHHSRVTESEDLQSARTLVQKVLEDSLLKLHEEQTGQRTLIRWELGACWVQNLQNQSTAENVETKPSEESKNEPTIKGLGKQFGL

Protein Length: 459

Fln nts: AAATCTGAGGCCATTGCAGCTATGGCTGCTGCCAAAGAGGCCACAGATAAAGGGGATATGACAGGAATGTGCCCTCCCTCTAAACTTGGCCAGTTCTATGAATTCTTCTCGTTCTCACATCTCTTGCCTCCTATCCAATTCATAAGGAAGTCCACAAGGCAATCTGTTGAAGACAAACGTCCTGGAGATTTTTTTTCTATAGACGTGAAGCTTTGCAATGGAAAGTTGGTGACTGTAACAGCATGCACCAAAGGCTTTTATAGTGTTGGAAAGCAGCTTGTTCAAAGTCATGCACTTGTCAACTTGCTACAGCAGTTGAGCAGGGCTTTTGCAAATGCCTATGATTGTCTCATGAAAGCCTTTTCAGAGCGTAATAAGTTTGGAAACCTACCATATGGTTTTCGTGCAAATACATGGGTTGTCCCACCAGTAGCTGCTGATTCACCATCTGTCTTCCCACCTCTACCAGTAGAGGATGAAACCTGGGATGGCAATGGTGGGGGTCAAGGAAGAGACGGAAAAAGTGATCTGAGACCCTGGGCGAGAGAATTTTCCATTCTAGCTGCTATGCCTTGCAAAACTGTAGAGGAGAGACAAATAAGGGATCGGAAAGCATTCCTACTTCATAGTTTATTTGTTGATGTTGCTGTCTTTAAAGCTGTATCTGCCGTTCAACATGTTATAGACGGAAAGAGAAGTTCAGATGAAACAAAAGCTCATGATCCCAATATAATATTGCATGAAGAGACTATCGGGGACTTAAAGATATCAGTCAGAAGAGATGTTCCAGATGCAAGCCAAAAACTAGATAGAAAGATTGATGGCAGCCAAGCCCCAGGAGTGTCATCTAGGGAACTTGCAGAGAGAAATCTGCTGAAAGGAATAACTGCAGATGAGAGCACAACTGTACATGATACTGCCACATTAGGAGTTGTTATTCTTAAACATTGTGGCTACACAGCAGTGGTGAAAGTTTCTGGTCATACACAAACTGAACTGGAATCTTCACCCCTGGACATTGACATTGAGGATCAGCCTGAAGGTGGTGCCAATGCTCTGAATGTCAATAGTTTAAGAACCCTGTTACACAAGGGATCCCGTATACAATCAAATTCAGGAATTCACCACTCCCGTGTTACTGAGTCTGAAGACTTGCAATCAGCAAGGACATTAGTTCAGAAAGTGCTAGAAGATAGCTTGCTCAAACTGCACGAAGAACAAACTGGTCAGAGAACATTAATAAGATGGGAACTTGGAGCATGCTGGGTACAGAATTTACAAAACCAATCAACTGCTGAAAATGTTGAGACGAAGCCTAGTGAAGAAAGTAAGAATGAACCCACCATAAAAGGACTTGGGAAACAGTTTGGATTG

Fln Alignment:

Contig6032___TDKGDMT-GMCPPSKLGQFYEFFSFSHLLPPIQFIRKSTRQSVEDKRPGDFFSIDVKLCNGKLVTVTACTKGFYSVGKQLVQSHALVNLLQQLSRAFANAYDCLMKAFSERNKFGNLPYGFRANTWXXXXXXXXXXXXXXXLPVEDETWDXXXXXXXXXXKSDLRPWAREFSILAAMPCKTVEERQIRDRKAFLLHSLFVDVAVFKAVSAVQHVIDGKRSSDETKAHDPN-IILHEETIGDLKISVRRDVPDASQKLDRKIDGSQAPGVSSRELAERNLLKGITADESTTVHDTATLGVVILKHCGYTAVVKVSGHTQTELESSPLDIDIEDQPEGGANALNVNSLRTLLHKGSRIQSNSGIHHSRVTESEDLQSARTLVQKVLEDSLLKLHEEQTGQRTLIRWELGACWVQNLQNQSTAENVETKPSEESKNEPTIKGLGKQFGL
F6HYM3______________SEKGDIAVSMCPPPRLGQFYDFFSFSHLTPPIQYIRRSTRPFLEDKTEDDLFQIDVRVCSGKPMTIVASRKGFYPAGKRLLLSHSLVSLLQQISRVFDSAYKALMKAFTEHNKFGNLPYGFRANTWVVPPVIADNPSHFPPLPIEDENWGGNGGGQGRDGKHDHRQWAKEFSILAAMPCKTAEERQIRDRKAFLLHSLFVDVSVFKAVAAIKHLME----SNKCSPNGPNGTVFHEERIGDLIIRVTRDVPDASLKLDGKNDGGQVLGMSKEELSQRNLLKGITADESATVHDTSTLGVVIVRHCGYTAVVKVPAKVNWEGNPIPQDIDIEDQPEGGANALNVNSLRMLLHKSSTPQAS--VQRLQSGDFEDSHSARCLVRNVLEESLMKLQGEATKHARSIRWELGACWVQHLQNQASGK-TESKKTEETKVEPAVKGLGKQGGL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
416	11		88		0.923564
417		11	88		0.923564
418	11		88		0.923564
424		87		12	0.992554
468	85		14		0.993533
491	16		83		0.994512
494	83			16	0.994512
533		20	80		0.995493
535		80		20	0.995493
536		80		20	0.995493
617			25	75	0.996473
618		66	33		0.997452
619		66	33		0.997452
677	66		33		0.997452
715			66	33	0.997452
804	50			25	0.995533
805		75	25		0.996473
806			25	75	0.996473
807	75		25		0.996473
873	33		66		0.997452
874		66		33	0.997452
1026		14		85	0.993533
1070		14	85		0.993533
1071	16			83	0.994512
1213	22		77		1.0
1297	14		85		0.999981
1298	85		14		0.999981
1344		58	41		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain