SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6017

Length: 1224 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6017

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative auxin-binding protein 1 n=1 Tax=Boehmeria nivea RepID=A8W7I6_BOENI	-	-	0.0	69%
FL-Next	sp=Auxin-binding protein T85; Nicotiana tabacum (Common tobacco).	-	-	0.0	62%
Sma3	Auxin-binding protein 1	-	-	1.988e-22	-

Source	Gene names
Sma3	6D05; ABP; ABP1; ABP4; ABP5; AUX311; At4g02980; ERABP1; ERabp1; GSVIVT00023647001; LOC_Os12g34450; LOC_Os12g34460; Os12g0529400; OsI_38566; OsJ_36328; OsJ_36329; PHYPADRAFT_151546; POPTRDRAFT_837493; RCOM_0647760; T4I9.14; T85; T92; abp; abp1; abp1alpha;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	auxin binding	GO:0010011	Molecular Function	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	unidimensional cell growth	GO:0009826	Biological Process	-
Sma3	positive regulation of DNA endoreduplication	GO:0032877	Biological Process	-
Sma3	positive regulation of cell size	GO:0045793	Biological Process	-
Sma3	positive regulation of cell division	GO:0051781	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Auxin-binding protein	IPR000526	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02980.1	ABP1, ABP endoplasmic reticulum auxin binding protein 1 chr4:1319902-1321449 REVERSE LENGTH=198	62%
RefSeq	Arabidopsis thaliana	NP_192207.1	auxin-binding protein 1 [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002331762.1	auxin binding protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P33490

Fln msg: Overlapping hits, possible frame ERROR between 335 and 325,

Fln protein: MATLYILLLLLCNISLLALIQTSEALDCAAKDIPRVRNLSDIPQDSYGREGFMHMTVAGAALHGMKEVEIWIQTFVPGSRTPIHRHSCEEVFLVMxxxxxQLLLAADSHKKYPGEPQEFAVFTNSTFTIPVNAAHQVWNSSPDEDLQVLVIISRPPIKVFIYNDWFTPHTAARLKFPYFWDVECLKTNFKDEYGFDEL*

Protein Length: 200

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATGGATGGAAG_-_ATGGCAACGCTCTACATTTTGCTGCTGCTGCTATGCAATATCTCGTTGCTCGCGTTAATTCAAACTTCCGAAGCTTTGGATTGCGCTGCAAAAGACATACCACGGGTCAGGAATCTGAGTGATATTCCTCAAGATAGCTATGGAAGAGAAGGATTCATGCATATGACAGTTGCAGGTGCTGCATTACATGGAATGAAAGAGGTAGAAATTTGGATTCAAACATTTGTGCCAGGATCTCGAACTCCAATACACAGACACTCATGCGAAGAGGTTTTCCTGGTGATGxxxxxxxxxxxxxxxCAACTTCTTTTGGCTGCAGATTCACACAAGAAATATCCTGGAGAGCCTCAAGAATTTGCAGTATTCACTAATAGTACATTCACTATCCCTGTGAATGCTGCACACCAGGTATGGAATTCAAGTCCAGATGAAGACCTGCAAGTTTTGGTCATAATATCTCGCCCTCCTATTAAAGTGTTCATCTATAATGATTGGTTTACCCCACATACAGCAGCACGATTGAAATTTCCATACTTTTGGGATGTAGAATGCTTGAAAACTAATTTCAAGGATGAGTATGGCTTTGACGAGTTATGA___CTGATATCTGAGAAGTGATTATTCATTATCAAGAACATGTGTATAAGCTAACTGATTCTATTATGCATTTCATTTATATTCTGTTTGCACTTAGTTTTGGAGTTTAAATATCCCCTGCACAGTCTTGTGTGGGCTGCACCCCACCATCAAGGCATGGCTAAACGACCAAATGTCGAAAAATATCCACTGTTTAAAATTTTACATGATTCGAATCTGCATATTTTTCCATGTCGTCCGATCCAGCACCCCAGAATCGATGATCTATGTTTCTGTGGATCAGACATGGACCTAGATTTGATACTTTGAAAATGCTGAAGGATCCGCACATTGGATACGTCATCGATGCAGATCCTGCCCCCCTCCCCTCGAAAAAATATTTTATATCATGACGACATTAATTTAAAACAGTTCACTTGTGTTGGGCCTTAAAACCCTATTAGGAATGAAATTTGTTGGACATTGCATGGTAGCCTTAATGACAACCATATTATAGCCCATCAAGTGTGCTATATATTAAACAGTAGCAGTATTATACACTAAATAGCAGCCAGACAATACATTAATAATAGTTTGTATCATGCACATTCAATA

Fln Alignment:

Contig6017___TSEALDCAAKDIPRVRNLSDIPQDSYGREGFMHMTVAGAALHGMKEVEIWIQTFVPGSRTPIHRHSCEEVFLVMxxxxQLLLAADSHKKYPGEPQEFAVFTNSTFTIPVNAAHQVWNSSPDEDLQVLVIISRPPIKVFIYNDWFTPHTAARLKFPYFWDVECLK-TNFKDE
P33490______________TAEASQCSINGLPLVRNISELPQENYGRSGLSHTTIAGSVLHGMKEIEVWLQTFAPGSRTPIHRHSCEEIFVVLxxxxILYLTPSSHSKYPGNPQEFHIFPNSTFHIPVNDVHQVWNTGEHEDLQVLVVISRPPVKVFMYDDWSMPHTAAKLKFPYYWDEECYQTTSWKDE

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
469	20		80		0.995493
666			66	33	1.0
758		66	33		1.0
790			90	10	0.90298
792		88	11		0.923564
854	40			60	1.0
869		85	14		0.993533
959	80		20		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
58	70	TGC TGC TGC TGC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain