SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene6011

Length: 1711 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene6011

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Motile_Sperm domain containing protein	-	-	1.0e-17	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Structural molecule, putative	-	-	7.819e-11	-

Source	Gene names
Sma3	AT4g21450; At4g05060; At4g21450; At5g54110; F18E5.70; GSVIVT00013092001; GSVIVT00027583001; GSVIVT00029184001; MtrDRAFT_AC149642g3v2; OJ1368_G08.30; Os07g0558800; Os08g0141300; OsI_26465; OsI_27767; OsJ_24723; OsJ_26001; P0473D02.15; P0567H04.18; PHYPADRA

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major sperm protein	IPR000535	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	PapD-like	IPR008962	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G54110.1	ATMAMI, MAMI membrane-associated mannitol-induced chr5:21958356-21960367 FORWARD LENGTH=266	48%
RefSeq	Arabidopsis thaliana	NP_568804.1	membrane-associated mannitol-induced protein [Arabidopsis thaliana]	48%
RefSeq	Populus trichocarpa	XP_002317246.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRI2

Fln msg:

Fln protein: MAAAVESGPSPSSENGTLTGCRLCALPWWQKRPAEGRQDVSENHSTRRPPVQNGQSLLASAKASLLTRRRLRLDPDKKLFFMYEPGKQASSVVKIRNVSRSSVAFKFQTNAPKSCFMKPPNGILGPKESITTTVVKFVEQPENSQERKKTKDKFKIVSLKVREGVEFTPELFDENKESLAVEKVLRVVFLDPQRPSKELEKLKKRLAEAEADSEARKKPVDDKAAKPPGPTEGVLDEWKVRRERYLARQAAEGADSV*

Protein Length: 259

Fln nts: TTTGAACCTAAATTTGTTTTGAATAATCCAATTTCTAGCGTTTTTTTCTTGGAAAGTGAAGTTAAAAACAGGCAAATCAATTTGTCCTTATTAGGGGTTAGGGAAATATTGATTTACGGTCAAATATCCACGAGGAGCATATGGACAACAATTTTCAAGCGTGTTCATGAATTTTTAGCGGTTATTGTTGAAGCAACTAGCCTGAATTTTTTAAAACAATGGATCACGAGTTTCGTGGAGAGTATCAGATAAAACTGGAAATGTTAGGCCTAAGGCCGTACAAGGCATGATCCAGGCGGTTTGAATTTTCGGCGTGTTTATTTGTATCTTTTGGCACCTGTTTGGCTACAAAGTGGTACACGAACTGAAATTTAAGGTAGGGAAGAGTTTCAAAGCTCAAGAGTTTGTAGATCGCATTTAGC_-_ATGGCCGCTGCCGTTGAGTCTGGTCCGAGTCCGAGCTCGGAAAATGGAACTTTAACAGGGTGCAGACTCTGTGCATTGCCGTGGTGGCAAAAAAGACCTGCGGAAGGGCGTCAGGATGTATCTGAGAATCACAGCACTCGGCGTCCCCCTGTTCAGAATGGGCAATCTTTATTAGCATCTGCAAAAGCGTCGCTGTTAACCAGGCGCCGCCTCCGACTTGATCCAGACAAAAAACTCTTCTTCATGTATGAACCTGGAAAGCAAGCTTCCAGCGTTGTGAAGATAAGGAATGTCAGCAGATCGTCTGTAGCCTTTAAATTCCAGACAAATGCTCCCAAAAGCTGTTTTATGAAACCTCCAAATGGTATACTTGGTCCAAAAGAGTCCATAACTACAACTGTTGTAAAATTTGTAGAGCAGCCAGAAAACTCTCAGGAAAGGAAGAAGACGAAGGATAAATTCAAAATTGTGAGCTTGAAAGTAAGAGAGGGCGTTGAATTTACTCCGGAACTGTTTGACGAGAATAAGGAGTCACTGGCAGTGGAGAAAGTATTGCGTGTTGTATTTCTTGATCCACAACGCCCATCCAAGGAGCTGGAGAAATTGAAGAAGCGTTTAGCAGAAGCAGAAGCTGATAGCGAAGCACGCAAGAAGCCTGTGGATGACAAGGCTGCAAAACCTCCTGGTCCTACAGAAGGCGTCCTAGATGAATGGAAGGTACGAAGAGAGAGATATCTGGCAAGACAAGCAGCTGAAGGAGCAGACTCTGTGTGA___ATATATTAGATTTTTCTGAGGGGAACAGCGTGTTTGTTCTGTTAGGAATCTTTTGGTGCTTATTTTCTTTGGAGGTTTAATAGCATACAGGGGAAAATGAATTTGGACATTGTAAAATGGATGCTACAGTACAACATCCTTTTGCTATCTGTCAACATATGCATTGCTGTTTGAGGAGAATCTTTCATGTACATATAGTTTGCCATTGCAAACTGAGGTTCCTATTTATTGTAAGTATTAATTCCACTGTACTAAACATTGCTCCACTATTGTTCTTTAGCTTTTATACTTCTGGAGGTATGCAATTCGACTCCATCCAAGCACGTTAGGACTCTGCATTCGTATTCAGTAATTGTATCTCAGAGGAAGGAGACGGTCGTCAAATTGAGTTGATATCAACCTTGACAGTTTTGATCGGATGACAGAGCCTCTACGTAGGCTCGCTATTTCTTTCTGCAACTGTTTGACATGAATTGAATATATTCTTGATTTCTTCAAATTCAATTTAGTTGTTA

Fln Alignment:

Contig6011___MAAAVESGPSPSSENGTLTGCRLCALPWWQKRPAEG---------RQDVSENHSTRRPPVQNGQXXXXXXXXXXXXXXXXXX-DPDKKLFFMYEPGKQASSVVKIRNVSRSSVAFKFQTNAPKSCFMKPPNGILGPKESITTTVVKFVEQPENSQERKKTKDKFKIVSLKVREGVEFTPELFDENKESLAVEKVLRVVFLDPQRPSXXXXXXXXXXXXXXXDSEARXXXXXXXXXXXXXXTEGVLDEWKVRRERYLARQAAEGADSV
A9NRI2______________MMATADFGGSTAQRSSK--GWNLCPMPWLNNGGSSSNVNSGNNSNRGSVDRNPNSNRHPLNTKQMSLGAIAKASFLVRRRLRFDPDRKLYFIYEPGKQVSSAVRIKNVSRSYVAFKFQTNAPKSCFMRPPNGILAPKESILATVMKFVEQPEHPNE-KKTKDKFRIVSLKVKEGAEFTSELFDEHKELVAVERVLQVVFLDPQRPCQDLEKLKKRLAEAEALNQARKKPQDDNTPKSTDPAEGVLDIWKDRREKYLARQQVE--DSV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
773	10		90		0.90298
778		90		10	0.90298
781	10	90			0.90298
789	90			10	0.90298
882	83		16		0.994512
886	83		16		0.994512
887	83		16		0.994512
1047	87			12	0.992554
1049		87	12		0.992554
1050	87		12		0.992554
1088	88		11		0.923564
1089		88	11		0.923564
1207	57			14	1.0
1208	42			57	1.0
1360	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain