SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5967

Length: 1639 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5967

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	55%

Source	Gene names
Sma3	AT4g32920; At4g32920; At5g11700; At5g47020; GSVIVT00015837001; GSVIVT00016629001; GSVIVT00032139001; OJ1111_A10.12; OSJNBa0027O01.13; OSJNBb0006L01.3; Os01g0187400; Os04g0182600; Os05g0185600; OsI_00705; OsI_15022; OsI_18735; OsJ_00683; OsJ_13970; OsJ_173

Source	GOs	Term	Type	e value	Identity
Sma3	vacuole	GO:0005773	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G47020.1	" unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unk	52%
RefSeq	Arabidopsis thaliana	NP_199513.2	uncharacterized protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002324157.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B8ADN7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 400 - 1184

Fln protein: RA*ATPDLIVAYVDFFLGGDEKRSDLPPRLQQRFPMCIIFGGDGSYMAPYYIHSDNLLTNLLGQAIPATVWYRFVAGLNAQLRTVRQGCIRSTLLPVIEWLGSHANPWFRLHGIRVDLGWFQATSSGYYQLGLLVNAADEMSRPAFLPDISGTTTIGQFRENNLKASHNSIQWQENQHHTTRSLSRRRIGGGIINAFTLQSLEYRKDLFFPLSLILHNTRPAGYQDLVGLITSVLLLGDFSLMLLTLLQFYSISLGAFFAVLLILPLALLSPFPAGINALFSHGHRRSAGLARVYALWNVTSLVNVVVALICAFLHYRLQSSSYGGMQSFRSSNTISRTDHQIKTTVSFSVEEGGWWIFPTALLLCKCVQARMVDWHIANLEIQDYTLYSSDPAEFWVS*

Protein Length: 401

Fln nts: GAAGGGCTTAAGCAACTCCAGATTTGATTGTGGCATACGTTGATTTTTTCCTTGGGGGTGATGAGAAGCGGTCAGACCTCCCTCCTCGTCTACAACAAAGATTTCCAATGTGCATCATTTTTGGAGGGGATGGAAGCTACATGGCTCCTTACTACATTCACAGTGATAATCTTCTGACAAATCTTCTAGGTCAGGCCATACCAGCTACCGTATGGTATCGATTTGTTGCTGGATTAAATGCTCAGTTGCGCACAGTCAGGCAAGGTTGTATTCGCAGCACATTACTGCCTGTAATTGAATGGCTTGGCAGTCATGCAAACCCGTGGTTCAGGCTACATGGTATAAGGGTTGATCTGGGCTGGTTCCAGGCCACCTCATCTGGATATTACCAGCTTGGCCTTTTGGTAAATGCAGCAGATGAAATGTCTCGGCCTGCATTTCTTCCAGACATATCAGGCACAACCACCATTGGTCAATTCAGGGAAAATAACTTGAAGGCTAGCCACAACTCTATACAATGGCAAGAGAATCAACACCATACCACTCGCAGCTTGTCACGAAGGAGGATAGGTGGAGGAATTATCAATGCATTTACTTTACAGTCTCTCGAGTATAGAAAGGACCTTTTCTTCCCTCTTTCTCTCATTTTGCACAATACACGTCCAGCTGGCTATCAGGATCTTGTGGGATTAATAACCTCAGTTTTACTTCTAGGAGATTTTAGTTTAATGCTTCTTACGCTGCTCCAGTTCTACTCAATTTCTCTGGGAGCATTTTTTGCAGTCCTCCTCATTCTTCCTCTTGCCTTGTTATCACCATTTCCTGCTGGTATCAACGCTCTATTCAGTCATGGACACCGGAGATCAGCAGGTCTTGCTCGTGTCTATGCATTGTGGAATGTAACATCTCTTGTTAATGTCGTGGTAGCTTTGATCTGTGCATTTTTGCATTACAGACTCCAGTCTTCCTCTTATGGCGGGATGCAAAGTTTTCGTTCATCAAATACCATCTCCAGGACAGATCACCAAATAAAAACTACTGTGTCATTTTCTGTGGAGGAAGGAGGATGGTGGATTTTCCCAACAGCGCTTTTACTTTGTAAATGTGTACAAGCTCGCATGGTAGATTGGCACATTGCCAATTTGGAAATTCAAGACTACACCTTGTATAGTAGCGATCCAGCAGAGTTTTGGGTGTCATGA___TTTTCTTCCATATTTGATATATATTGAGGTCTGCAATTTCATTAACAGTGGCAGGCTCTCATTGTTTCACGAGGATTGATTCTCCAAGGCATAATTTGTTTTGGTCGTTGTGGAATTTGTGAGTTTTGTTCTCTAATACATGTATTCTCTGCCATAAAATTTTAGTGGGCATGCAGGGTATTTTCTGTGGAAATATGTGAGACAGGATATGTAAAATCACTAGAAAGAATAGGGATCAAGCAACGAACAGCTCATTTGATTTTCCTAGCCCCTTGGTTGTAGATATGTTTTTTTGAAGTTCCACATTGTGTTTGCCATGGGTGGCAAAAGTACATAAATTGTAAATAACTTTTTGATTAATGAAGTAATTCATTTGGGCTGAGAATTATGCTAGCGCTGCTTTCAGTTGTAAATGAGTTTCATGGTTGCAAAACATT

Fln Alignment:

Contig5967___ATPDLIVAYVDFFLGGDEKRSDLPPRLQQRFPMCIIFGGDGSYMAPYYIHSDNLLTNLLGQAIPATVWYRFVAGLNAQLRTVRQGCIRSTLLPVIEWLGSHANPWFRLHGIRVDLGWFQATSSGYYQLGLLVNAADEMSRPAFLPDISGTTTIGQFRENNLKASHNSIQWQENQHHTTRSLSXXXXXXXXXNAFTLQSLEYRKDLFFPLSLILHNTRPAGYQDLVGLITSVLLLGDFSLMLLTLLQFYSISLGXXXXXXXXXXXXXXXXXXXGINALFSHGHRRSAGLARVYALWNVTSLVNVVVALICAFLHYRLQSSSYGGMQSFRSSNTISRTDHQIKTTVSFSVEEGGWWIFPTALLLCKCVQARMVDWHIANLEIQDYTLYSSDPAEFWVS
B8ADN7______________ATPDLMLGYLDFFLGGDEKRPDLPPRLRQRFPMCLIFGGDGSYMAPFSLHSDSVLTSLMSQAVPSSIWHRLVAGLNAQLRLVRRGNLRGTFLPVLDWLETHANPSLGVNGVRVDLAWFQATALGYCQLGLVVYAVEE----PVSAELDGSPRI-KIEQHSLTQNMHA-DTQLGHSRTKEALMRKRITGGILDSNSLRTLKDRRDLFYPFSLILHNTKPVGHQDLVGLVISILLLADFSLVLLTFLQLYSYSMADVLLVLFVLPLGILSPFPAGINALFSHGPRRSAGLARVYALWNITSLVNVVVAFACGLVHYKSSTKRHPSTQPW-----------------NLGTDESGWWLFPTGLMLLKCIQARLVDWHVANLEIQDRAVYSNDPSIFWQS

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
458		83		16	0.994512
692	85			14	0.993533
942	87			12	0.992554
1017		10	90		0.90298
1019		90		10	0.90298
1020	90			10	0.90298
1024		88		11	0.923564
1052	12	87			0.992554
1055			12	87	0.992554
1157	84		15		0.999986
1466	12			87	0.992554
1468	12	87			0.992554
1470	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain