SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5934

Length: 1891 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5934

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat transmembrane protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RBW0_RICCO	-	-	0.0	60%
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Araucaria angustifolia.	-	-	0.0	31%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.883e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	9.292e-06	-

Source	Gene names
Sma3	AT1G12460; AT1G62950; AT3G28040; AT5G01890; At1g12460; At1g62950; At3g28040; At3g56370; At5g01890; F16P17.10; GSVIVT00001030001; GSVIVT00029456001; GSVIVT00033546001; GSVIVT00037496001; IRK; LOC_Os03g03570; LOC_Os03g21730; LOC_Os10g38800; LRR-RLK; MpRLK27

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G12460.1	Leucine-rich repeat protein kinase family protein chr1:4247703-4250444 FORWARD LENGTH=882	59%
RefSeq	Arabidopsis thaliana	NP_172708.1	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002303543.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D1MEH6

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 40 aas, putative chimeric sequence, your sequence is shorter than subject: 529 - 630

Fln protein: GTIPSEIGDIELLQILDLCDLHLTGAIPAVLSNCRFLLELDLSDNILDGIIPENIYNITYLRRLDLHGNRINGSIPLLLGNLNDMKYLDLSNNTLSGMIPSSLGNMTQLGFFNVSFNNLQGPIPNNSVMHKFGNQSFIGNKGLCGPPLDTPCTAPSPAPLIGPSGKTRVLTVSAIIAIVAAAIIAVGVCIITLMNVRALRRKKTELLVYESTPPSPDANLIVGKLVLFSKSLPSKYEDWEAGTKALLDKECFIGGGAIGTVYKATFEGGLSIAVKKLETLGRIKVQEEFEQEISRLGNLRHPNLVAIQGYYWSSTMQLILSDFISNGNLYHHLHEVRPGNTSLCWGRRFRIALGTAKALAYLHHDCKPQILHFDIKSSNILIDDDFEPRLSDYGLGKLLPMLDSYISSRRFHNAVGYVAPELACQSLRLTEKCDVYSFGVIVLELVTGRRPVESSESEVVILCEYVRSSLERGEGAACIDPNLHQRPENEVMQVLKLGLICTAQTPSRRPSMAEVVQVLESIKPNSDL*

Protein Length: 530

Fln nts: GGTACAATTCCTTCGGAGATTGGAGATATTGAGCTTCTTCAAATACTCGACTTGTGTGATCTGCATTTGACGGGTGCTATCCCTGCAGTGCTGTCTAATTGCAGATTTCTGTTAGAGCTTGATCTCTCAGACAACATTCTTGATGGCATTATCCCTGAGAATATTTATAATATCACATATCTGAGGAGGCTGGATCTGCATGGGAACAGAATCAATGGCAGCATTCCTTTATTGCTTGGTAACCTCAATGATATGAAATATCTGGATTTGTCGAATAATACACTATCTGGAATGATCCCTTCATCGCTGGGCAACATGACTCAACTGGGTTTTTTTAATGTTTCTTTCAACAACCTTCAGGGTCCTATACCGAATAATTCTGTAATGCATAAATTTGGCAATCAATCCTTTATTGGAAATAAAGGATTATGTGGACCTCCACTGGACACACCTTGCACAGCACCCTCGCCAGCTCCATTGATTGGACCAAGTGGAAAAACCAGGGTGTTAACTGTTTCTGCAATTATTGCCATAGTAGCTGCTGCAATAATAGCTGTAGGCGTGTGCATAATTACATTGATGAATGTGAGGGCCCTTAGGAGAAAAAAGACTGAATTGCTTGTCTATGAAAGCACACCTCCTTCTCCTGACGCTAATCTGATTGTAGGCAAACTTGTTCTCTTCAGCAAAAGCCTGCCATCAAAATATGAAGATTGGGAGGCAGGGACCAAAGCTTTACTTGACAAGGAATGTTTTATTGGAGGTGGTGCTATTGGAACCGTTTACAAAGCAACTTTTGAAGGAGGATTATCTATTGCAGTCAAGAAGCTGGAGACACTGGGGAGAATAAAAGTCCAAGAAGAATTTGAACAGGAAATCAGTCGTCTTGGTAACCTTCGACATCCAAATCTTGTTGCCATACAAGGATATTACTGGTCATCAACTATGCAACTCATTTTGTCAGATTTCATTTCCAATGGAAACCTTTACCATCACTTGCATGAAGTTCGTCCTGGGAACACATCCTTATGCTGGGGCAGACGTTTTAGGATTGCCCTGGGCACTGCTAAAGCACTTGCTTACCTCCACCATGATTGCAAACCTCAGATTTTACACTTCGACATAAAGTCCTCCAATATTCTCATTGATGATGATTTTGAACCTCGACTATCGGATTATGGACTTGGCAAATTGTTGCCAATGTTGGACTCATATATATCAAGTAGGAGGTTCCATAATGCTGTTGGCTATGTTGCTCCAGAACTTGCTTGTCAGAGCTTGAGGCTAACAGAAAAATGTGATGTATATAGCTTTGGGGTGATTGTGTTGGAGCTTGTTACAGGTAGGAGGCCGGTTGAAAGCTCTGAGTCTGAGGTGGTTATTCTGTGTGAGTATGTGAGATCTTCTCTTGAACGGGGGGAAGGAGCAGCGTGTATTGATCCCAATTTACATCAACGACCTGAAAATGAGGTCATGCAGGTATTGAAACTTGGGCTTATTTGCACCGCTCAGACACCATCAAGAAGACCTAGTATGGCAGAGGTTGTTCAGGTTCTGGAGTCAATCAAACCCAATTCAGATTTGTGA___TATGAACATATACATTCAGATTTTTTGGGGGGCTCTCATTCAGCTCCCTGTAAAGGGTGGAAGTATTTCGATTTTTATGCATTTCTATCAAACAGGTTTGAGATTTTTTTCCCTTTAATGAAAGTTAACACTCTATTTGTTCAAGAATGACATAGATCATTCGAATTATCTGTTGAGCTGGATACTCCTATGGGCAAAATAGTATTTTTGTAAAGTCAGATGGGAGGACTTTGGGAGTAGAGGGTGGGGAATGAGTGTTATTTATTTGTGACTTCTGTTTATTCTTTACATTTGCTTCTTTAAT

Fln Alignment:

Contig5934___TGAIPAVLSNCRFLLELDLSDNILDGIIPENIYNITYLRRLDLHGNRINGSIPLLLGNLNDMKYLDLSNNTLSGMIPSSLGNMTQLGFFNVSFNNLQGPIPNNSVMHKFGNQSFIGNKGLCGPPLDTPCTAPSP----------APLIGPSGKTRVLTVSXXXXXXXXXXXXXXXXXXTLMNVRALRRKKTELLVYESTPPSPDANLIVGKLVLFSKSLPSKYEDWEAGTKALLDKECFIGGGAIGTVYKATFEGGLSIAVKKLETLGRIKVQEEFEQEISRLGNLRHPNLVAIQGYYWSSTMQLILSDFISNGNLYHHLHEVRPGNTSLCWGRRFRIALGTAKALAYLHHDCKPQILHFDIKSSNILIDDDFEPRLSDYGLGKLLPMLDSYISSRRFHNAVGYVAPELACQSLRLTEKCDVYSFGVIVLELVTGRRPVE---SSESEVVILCEYVRSSLERGEGAACIDPNL-HQRPENEVMQVLKLGLICTAQTPSRRPSMAEVVQVLE
D1MEH6______________SGALVPQLGQLKKLQYLEFYSNNISGTIPKELGNLTNLVSLDLYFNNFTGPIPDSLGQLSKLRFLRLNNNSLTGPIPKSLTTITALQVLDLSNNNLTGEVPANGSFSLFTPISFGGNQYLCGPVAQKPCPGSPPFSPPPPFVPPPPVAGSNGARVQSSSSTGAIAGGVAAGAALLFAAPAIGFAWWRRRKPQEHFFD-VPAEEDPEVHLGQLKRFS------LRELQVATDGFSNRN-ILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERAQNDPPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTT-AVRGTIGHIAPEYLSTG-KSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKERRLDMLVDPDLKNNYVEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
78		25		75	0.996473
280	83		16		0.999991
948	16		83		0.994512
952		83		16	0.994512
1076		16		83	0.999991
1244		10		90	0.90298
1330	14		85		0.993533
1373	88		11		0.923564
1422	88			11	0.923564
1731	83			16	0.994512
1736		12		87	0.992554
1737	12		87		0.992554
1739		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain