SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5912

Length: 2791 nt

UniGene Fasta

>sp_v3.0_unigene5912
CTATCCTGCTTATATCCTCTTGGTCAATTTCATTGCACGGGGGTTTTCAGCATTTGTGTTGTAGTCTTGACCTGTCAAGGTTTTTGGCACCGAATTCATGGCTCCCATAGGTTGTATATTTGGATGCCTTTGCTGACATCGAGAGCCCTCTCATCTCTTGAATTTAGCCAATTTATAGCAGAGTTATAGGGTTTGCATTGTGCAGAGCGCACCATATCTATCTTAGGGTTCTAGCTTCGGAAATGGCAGACGAGGGTTATTCATCCTCACGCTCTGACCACAAAAGGAAATTTGATGATACTGACAGGGTTGGGAGGAAAACAGGCTTCTCTGATCGGCCTAACGGGGAGAACCAGGTTGCATACAACAGCGCTCCGCCCCCGCTGGATGAAGTGCAGATTGCTAAACAAAAGGCTCAGGAGATCGTTGCTCGTCTTGTCAGTGATGCCGAGGCCAAACGCCCTCGCACGGAGGACGACGACACTAATCGCGCAGATCAAAGTCTGATGCAAAGGCCTCTAAGTCAGTCTGGTGCAAATCTCCAATCTGGAGAATTTTATTCAGCAACACAGCAGAGTCAATATTCTGATTTCCAAAGTTCATCTCGGAAGCTTGATGTACCAAATTCCAAGGTTGGTCTTCTCATTGGTAAAGGTGGAGAAACTATTAAGTATCTTCAGCAACACTCTGGTGCCAGGATTCAGATAACTAGAGATTCTGATGCCGACCCTTTTTCTCCGACCAGGCAAGTGGAGTTAATAGGACCTCTAGATCGTGTCGACAAGGCTGAACAACTTATCAAGGATATCATTGCACAGGCTGATGCAGGGGGTTCTGGTACACAAACTGCACGAGGATTGAATACTTTGCAGTCTGGAGGGGACCAAATCCAATTAAAGGTTCCAAATAACAAGGTGGGTATGATCATTGGCAAAGGAGGTGAGACTATCAGGAACCTACAAAGTAGGTCTGGAGCGCGGATTCAGTTAATACCATTGCACCTTCCTGAGGGAGATATGTCTACAAGTAGGACAGTGCATGTGACTGGCAATAAACAGCAAATAGAGGCAGCCCAGGAAATGATCAACGATGTGATAAGTGAGAACCGTTCTAGAAGTACACCTATGATGGGGGGTTACAATCAGCAAGGTTATCGCCCACGTGCACCTGCACTACAGTGGGGTCCTAGAGGGCCACTGCCAACGCAATATCCAGGTTATGGATACCAGCAACAGACACCTTCACCATTCGCAGGACCTTCCCAGTATCAATCTCAGCCATATGGTAATTATCCTCAACAGACTCAAGGTGGCTATGCTTCTGGATGGGATCAACGGCCTCCTGCACCTGGTCAAGCTCCGGGACAAGCTGAAGAATATGGTTACTATGGACAACAGGGTCAGACAGGGACAGCATCTACAGATGGGAATTATGGTTATGGGCAGCCACAAGAAGGAGGATATGGACAGCCAGGCACTTATGAGCAACAAGGTTTCTCTCAACAGGGCTACGATCAAGGATATGGAGATCAAAACTATGGAGGTCAAGAATCATCCCAGCAGGTTGGTGGACAGCAAGGGAACCCCCAACAAGGGTATGGGCAGCAAATCTATGCCAACAAACCTGTTTATGGACCACCGGGAACAACTGAAACAGGAACTGTGTCACAACATCCTCCTGCAACAGAAGCAGAGGGACCACCGAATTCTTCTCTGCAAGGATATCCAGAACAAGTATATGGGGGTCCAGGAACTTTTCGTGAAGGATATGGTCAACAGTCACCTGCTACTCCTGGTTATGGACAGCATGTAACTCAGTCTGGCTATGGTCAACCTTTACCAGCTCAGCCATCCTATGGACAACAAGTGCCCTCTCAACCTGGTTATCTGCAGCAGCATGCATCTTCTCAGCCAGGATATAAGCAGCTGGGTTTAAACCATTCAGGCTATGGACAGGCTTCAACAGAGGCAGGTTATGGGCAGCAGGGATCAACTCATCCTGGTACTGTGCAGAAAGAAACATCCCAATCGGGCTATTATGAGCAAGAGGGCTTATCTCAACCTGGCTCAGTAAAGCAAGAGTCTTCTCAAGTTGGCTATGGGCAAAATGTATCCTCCCAGCCTGGATATGGGCAAAATTTATCCTCCCAGCCTGGGTATGGGCAACACGAATCCAATCAGAAAACATACGAGGGATCTACACAACAAGGATACGGGGAACACTCCTACAACGATGGATATAGCTACGATCAGCTTCCTGCAGATGGTTAGCATAAAATTGTACGTGCATCCACCACACTATATCATGTGATGTCCCTGCAAATAGAGACAACATTTATGAGTAAAGTTTAAGTGGGCAGAGTATGGGGGTCTAGTTCTGGAAACCCTAAAGAAACATTTCAAGTTGAAATCTGTTATTGTCTATTGGATGATATGGTTGTTAGCTTGTACAGTAATGACTGGTAAAGGAGGGTTTCAAGCTCTAATAAGCTATTATTTATAGCTCACATTTCCTTTTAATTAATTAGATAGGTTATTTTATAGGCTGTGGCACAATGATATGGTAGGGCATTTTTAATTTTTTCTTGTACTTTATGAGCTCCTTAGCATTCTTTGGATCATTAACTTGATTAATTTTTTGTATCCTATTTCAGAGGTTCTGGTGTTATTTTGTTTCTTGAAAATAACTGTGGAATCTCATAAACCTGTGGATATGATTTGTCTATTCTTCACTAAGTCATTGATAATGAGCATATTAGTGCTATTGCCTACTTAATGACTACGTGATCTCT

Ace file of the UniGene sp_v3.0_unigene5912

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	upstream element-binding protein [Arabidopsis thaliana] gb\|AAL84954.1\| F17H15.1/F17H15.1 [Arabidopsis thaliana] gb\|AAM15002.1\| unknown protein [Arabidopsis thaliana] gb\|AAM15045.1\| unknown protein [Arabidopsis thaliana] dbj\|BAE98938.1\| hypothetical protei	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%

Source	Gene names
Sma3	F14M2.18; GSVIVT00021805001; GSVIVT00032165001; Os08g0110800; OsI_06421; POPTRDRAFT_574172; POPTRDRAFT_653922; POPTRDRAFT_781843; POPTRDRAFT_825640; RCOM_0798130; VITISV_021596;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25970.1	KH domain-containing protein chr2:11071844-11075604 REVERSE LENGTH=632	46%
RefSeq	Arabidopsis thaliana	NP_180167.1	upstream element-binding protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002324756.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUY9

Fln msg: your sequence is longer than subject: 676 - 357

Fln protein: MADEGYSSSRSDHKRKFDDTDRVGRKTGFSDRPNGENQVAYNSAPPPLDEVQIAKQKAQEIVARLVSDAEAKRPRTEDDDTNRADQSLMQRPLSQSGANLQSGEFYSATQQSQYSDFQSSSRKLDVPNSKVGLLIGKGGETIKYLQQHSGARIQITRDSDADPFSPTRQVELIGPLDRVDKAEQLIKDIIAQADAGGSGTQTARGLNTLQSGGDQIQLKVPNNKVGMIIGKGGETIRNLQSRSGARIQLIPLHLPEGDMSTSRTVHVTGNKQQIEAAQEMINDVISENRSRSTPMMGGYNQQGYRPRAPALQWGPRGPLPTQYPGYGYQQQTPSPFAGPSQYQSQPYGNYPQQTQGGYASGWDQRPPAPGQAPGQAEEYGYYGQQGQTGTASTDGNYGYGQPQEGGYGQPGTYEQQGFSQQGYDQGYGDQNYGGQESSQQVGGQQGNPQQGYGQQIYANKPVYGPPGTTETGTVSQHPPATEAEGPPNSSLQGYPEQVYGGPGTFREGYGQQSPATPGYGQHVTQSGYGQPLPAQPSYGQQVPSQPGYLQQHASSQPGYKQLGLNHSGYGQASTEAGYGQQGSTHPGTVQKETSQSGYYEQEGLSQPGSVKQESSQVGYGQNVSSQPGYGQNLSSQPGYGQHESNQKTYEGSTQQGYGEHSYNDGYSYDQLPADG*

Protein Length: 677

Fln nts: CTATCCTGCTTATATCCTCTTGGTCAATTTCATTGCACGGGGGTTTTCAGCATTTGTGTTGTAGTCTTGACCTGTCAAGGTTTTTGGCACCGAATTCATGGCTCCCATAGGTTGTATATTTGGATGCCTTTGCTGACATCGAGAGCCCTCTCATCTCTTGAATTTAGCCAATTTATAGCAGAGTTATAGGGTTTGCATTGTGCAGAGCGCACCATATCTATCTTAGGGTTCTAGCTTCGGAA_-_ATGGCAGACGAGGGTTATTCATCCTCACGCTCTGACCACAAAAGGAAATTTGATGATACTGACAGGGTTGGGAGGAAAACAGGCTTCTCTGATCGGCCTAACGGGGAGAACCAGGTTGCATACAACAGCGCTCCGCCCCCGCTGGATGAAGTGCAGATTGCTAAACAAAAGGCTCAGGAGATCGTTGCTCGTCTTGTCAGTGATGCCGAGGCCAAACGCCCTCGCACGGAGGACGACGACACTAATCGCGCAGATCAAAGTCTGATGCAAAGGCCTCTAAGTCAGTCTGGTGCAAATCTCCAATCTGGAGAATTTTATTCAGCAACACAGCAGAGTCAATATTCTGATTTCCAAAGTTCATCTCGGAAGCTTGATGTACCAAATTCCAAGGTTGGTCTTCTCATTGGTAAAGGTGGAGAAACTATTAAGTATCTTCAGCAACACTCTGGTGCCAGGATTCAGATAACTAGAGATTCTGATGCCGACCCTTTTTCTCCGACCAGGCAAGTGGAGTTAATAGGACCTCTAGATCGTGTCGACAAGGCTGAACAACTTATCAAGGATATCATTGCACAGGCTGATGCAGGGGGTTCTGGTACACAAACTGCACGAGGATTGAATACTTTGCAGTCTGGAGGGGACCAAATCCAATTAAAGGTTCCAAATAACAAGGTGGGTATGATCATTGGCAAAGGAGGTGAGACTATCAGGAACCTACAAAGTAGGTCTGGAGCGCGGATTCAGTTAATACCATTGCACCTTCCTGAGGGAGATATGTCTACAAGTAGGACAGTGCATGTGACTGGCAATAAACAGCAAATAGAGGCAGCCCAGGAAATGATCAACGATGTGATAAGTGAGAACCGTTCTAGAAGTACACCTATGATGGGGGGTTACAATCAGCAAGGTTATCGCCCACGTGCACCTGCACTACAGTGGGGTCCTAGAGGGCCACTGCCAACGCAATATCCAGGTTATGGATACCAGCAACAGACACCTTCACCATTCGCAGGACCTTCCCAGTATCAATCTCAGCCATATGGTAATTATCCTCAACAGACTCAAGGTGGCTATGCTTCTGGATGGGATCAACGGCCTCCTGCACCTGGTCAAGCTCCGGGACAAGCTGAAGAATATGGTTACTATGGACAACAGGGTCAGACAGGGACAGCATCTACAGATGGGAATTATGGTTATGGGCAGCCACAAGAAGGAGGATATGGACAGCCAGGCACTTATGAGCAACAAGGTTTCTCTCAACAGGGCTACGATCAAGGATATGGAGATCAAAACTATGGAGGTCAAGAATCATCCCAGCAGGTTGGTGGACAGCAAGGGAACCCCCAACAAGGGTATGGGCAGCAAATCTATGCCAACAAACCTGTTTATGGACCACCGGGAACAACTGAAACAGGAACTGTGTCACAACATCCTCCTGCAACAGAAGCAGAGGGACCACCGAATTCTTCTCTGCAAGGATATCCAGAACAAGTATATGGGGGTCCAGGAACTTTTCGTGAAGGATATGGTCAACAGTCACCTGCTACTCCTGGTTATGGACAGCATGTAACTCAGTCTGGCTATGGTCAACCTTTACCAGCTCAGCCATCCTATGGACAACAAGTGCCCTCTCAACCTGGTTATCTGCAGCAGCATGCATCTTCTCAGCCAGGATATAAGCAGCTGGGTTTAAACCATTCAGGCTATGGACAGGCTTCAACAGAGGCAGGTTATGGGCAGCAGGGATCAACTCATCCTGGTACTGTGCAGAAAGAAACATCCCAATCGGGCTATTATGAGCAAGAGGGCTTATCTCAACCTGGCTCAGTAAAGCAAGAGTCTTCTCAAGTTGGCTATGGGCAAAATGTATCCTCCCAGCCTGGATATGGGCAAAATTTATCCTCCCAGCCTGGGTATGGGCAACACGAATCCAATCAGAAAACATACGAGGGATCTACACAACAAGGATACGGGGAACACTCCTACAACGATGGATATAGCTACGATCAGCTTCCTGCAGATGGTTAG___CATAAAATTGTACGTGCATCCACCACACTATATCATGTGATGTCCCTGCAAATAGAGACAACATTTATGAGTAAAGTTTAAGTGGGCAGAGTATGGGGGTCTAGTTCTGGAAACCCTAAAGAAACATTTCAAGTTGAAATCTGTTATTGTCTATTGGATGATATGGTTGTTAGCTTGTACAGTAATGACTGGTAAAGGAGGGTTTCAAGCTCTAATAAGCTATTATTTATAGCTCACATTTCCTTTTAATTAATTAGATAGGTTATTTTATAGGCTGTGGCACAATGATATGGTAGGGCATTTTTAATTTTTTCTTGTACTTTATGAGCTCCTTAGCATTCTTTGGATCATTAACTTGATTAATTTTTTGTATCCTATTTCAGAGGTTCTGGTGTTATTTTGTTTCTTGAAAATAACTGTGGAATCTCATAAACCTGTGGATATGATTTGTCTATTCTTCACTAAGTCATTGATAATGAGCATATTAGTGCTATTGCCTACTTAATGACTACGTGATCTCT

Fln Alignment:

Contig5912___KLDVPNSKVGLLIGKGGETIKYLQQHSGARIQITRDSDADPFSPTRQVELIGPLDRVDKAEQLI-KDIIAQADAGGSGTQTARGLNTLQSGGDQIQLKVPNNKVGMIIGKGGETIRNLQSRSGARIQLIPLHLPEGDMSTSRTVHVTGNKQQIEAAQEMINDVISEN
A9NUY9______________RLLVSNAAAGSVIGKGGATVSDFQTQSGARIQLSRNHEFFPGTTDRIILVTGSINEILTAANLILQKLLSEAEDN----------NDVDEKTSQVRLVLPNSVCGGIIGKGGATIKSFVEHSQASIKLSSQDQILPGVS-DRLVTITGTLEQQLRAIFLIVSKLAED

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
931	12			87	0.992554
934			87	12	0.992554
1033		12	87		0.992554
1034	12		87		0.992554
1035	87			12	0.992554
1036		87		12	0.992554
1122	87		12		0.992554
1123		85		14	0.993533
1127		14		85	0.993533
1235	85	14			0.993533
1277	14			85	0.993533
1280			85	14	0.993533
1281		85		14	0.993533
1494			83	16	0.994512
1558	16	83			0.994512
1560	16	83			0.994512
1561	83			16	0.994512
1562			83	16	0.994512
1595	83			16	0.994512
1686	87			12	0.992554
1687		87	12		0.992554
1688	87		12		0.992554
1781			87	12	0.992554
1853	88			11	0.923564
2118			23	76	1.0
2120		76		23	1.0
2121	30	69			1.0
2125	16	83			0.999991
2314		22		77	0.999999
2354	88			11	0.923564
2356			11	88	0.923564
2476	16			83	0.994512
2493		80		20	0.995493
2510	20	80			0.995493
2512	20			80	0.995493
2513	20			80	0.995493
2514		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain