SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5895

Length: 2477 nt

UniGene Fasta

>sp_v3.0_unigene5895
CGTCGTGACCTTGGCTGTCATGGGGATCTACAAAGATCCCGGGGTCGAACCCCTTCCTTAACCAAACAAAAAAGGGACGAGGGTTTTCATAAGTCTTTCGGTTGCGCTTACACTCCTGTCCGGGGTGAACCTGCAGGAGGCGTCGAAGAGCAGATCAGTATGTATGACTGAAGCAACGGGTGGCGTTGTGAAGGAACGAATTGGAAACCCCTTTTTTTTAATCGAATCAAGGGCTGAAGAATTCAGAGCTGAAAGTGGTTCGTTGGGTGCGGGATTGATCCGAAAGAAATTAAGGTGAGTGGATTTGAATGAAGTGATAATTAATAGAATGGCGGAGAGAGTAAAGCAGATGCTGGCATCGCCCATCCAGTTGGCGGATGAGGTATCGAAAACGGCGGAAGAAGCTCATTCTTTCAAGCAGGAATGCATGGAGGTGAAGAGACAGACGGACAAATTAGCTGCTCTGCTGCGACAAGCGGCACGGGCGTCGGGGGGCCTGTATGAGAGGCCAACAGGTCGAATTACAGAAGAAATAAATCAAGTTCTGGGAAAAGCTCTGGTTTTGGTGACGAAATGCAGGCGCAATGCGGTTCTGAAGAGGGTTTTCACCATAACATCGGCGGCAGCATTCAGAAAAATGAATTTCTTACTGGACAGCTCGATCGGGGACGTGACGTGGCTTCTGAATGTGTCTGCGAGCGGGGAAGATCGAGCAGATCATTTGGGTTTGCCTCCCATAGCGACAAATGATCCGATGCTTGGCCTGATCTGGGAACAGATAGCACGGTTGCACACAGGGAGCAGTCCCGAGGAGAAAGCGGACGCGGCAGCCTCATTGGTTTCTCTGGCCCAGGACAACGAGCGAAATGGGAAATTGATTGTCGAAGAAGGCGGAATCGGCCCCTTGCTCAAGCTTATCAAGGAAGGCACCGTTGAAGGCCAGGAAGCCGCGGCAAAAGCCATCGGGAAACTTGGTAAGGATCCTGAACGCGTTAGGCAGATAATTCAGGAGGGTGTGTGCTCTGTTTTTGCGAAGGTCTTGAAGGACGGTGGTCCAATGAAGGTCCAGAGTATGGTCGCCTGGGCTTTGTCTGAGTTGGTCTCCCATGATCCCGAATCGCAGGAGCATTTTGCCCAGAGTGGAATTATCAGGTCACTTGTTGGTCATTTGGCCTTTGAGACAGTTCCTGATCATAGCAAGTATACTGTCGGTGCCAAGGCCATGAGCATGCAATCTGTTGTCAATCTCGCAGCCAAAGATAATAATCGTCTTACTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCATCCTCATCCTCATCCTCATCCTCAGACTCAGACTCAGCCGCCCCTCCTGCATAGTAATAGTGATAATAGCGATTCCCCAAATCCACAACATGATAATGGCACCAAATATGCAACCCGCAGAGATATAGGATTGCCCTCTTTATCAGGCCTGAATCTGAAAGGCAAGGAAGCCGAGGATCCACTAGTAAAGGCTTCAATGAAGGCGGAAGCCGCCAGGGCTCTTTGGAAACTTGCTAAGAACAACATAAAGACTTGTAAAAGTATAACGGAGTCCAAGGCCTTGCTTTGCTTTGCAATACTATTGGAAAAGGGCAAAGGTGAAGTGCAGTATAATTCGGCCATGGCAGTGATGGAGATTGCAGCTGTAGCAGAGGAGTATCCTGATTTGAGAAGATCTGCGTTTAAGACCAACTCTCCTGCTGCTAAGGCATTGGTTGATCAGCTTCTCAGAATTATACAAGATGATGATTCTGAATCTCAACTTTTGATTCCCTGCATAAAATCGATTGGATGCCTTGCTCGGACCTTCCCTGCTAGAGAAACCAGGCTCATCCATCCGCTTGTGAAACATCTAGATAATAGAGACTTATATGTGAACGGAGAGGCAGCCACTGCACTGGGCAAGTTTGCCTGCAGGGAAAATTATCTACATATGGAGCATTCCAAAGCCATCATTGAGTCGTCTAGTGCTCCGCACTTGGTGCAGCTTGTGTACTTTGGAGAAGGGATGGCTCAGGTTCCTGCGTTGGTTCTTCTCTGTTACCTTGCTTTACATGTTGGTGACAGTGAAGCTCTTGCCAAAGCAGAAGCATTGTCAGCGCTGGAATGGGCATCTAAGCAGGTTTCTCTCATTCAGAATCCTCATTTGGAGAGCCTGCTTCCAGAGGCCAAAAGCCGTCTCGAACTCTACCAATCCAGAGGATATCATCGATTCCATTGATTTGAGTTGAATTGGGAGGACATGAGATGGTATTAGCTTAGGTAATTTGTTTAACTCTCCCTTGAGCTACAATTAAAGAAAAATTTTGTTCCTATGGTGTCTATCTGTGAGGGAGGTGTGTTTCTAATTTGTATATTGTAAAGAAATTGATTTATTTGGTTTGATTGATTCATGACTTTTTGAAGAAATTTACTTGACCTGCGCTTGTATGGAATATTCTTTTGACATG

Ace file of the UniGene sp_v3.0_unigene5895

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TPA_inf: ARO1-like protein 1 [Medicago truncatula]	-	-	0.0	61%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	58%
Sma3	ARO1-like protein 1	-	-	1.087e-16	-

Source	Gene names
Sma3	AROl-1; AT4g34940; AT4g36030; At3g26600; At4g34940; At4g36030; At4g36030/T19K4_160; At5g66200; GSVIVT00016003001; GSVIVT00036091001; GSVIVT00036776001; LOC_Os03g14090; LOC_Os10g05730; OJ1112_E06.21; OSJNBb0016M10.6; Os03g0244700; Os08g0548500; Os09g053620

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	pollen tube growth	GO:0009860	Biological Process	-
Sma3	actin cytoskeleton organization	GO:0030036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34940.1	ARO1 armadillo repeat only 1 chr4:16639760-16641754 FORWARD LENGTH=664	61%
RefSeq	Arabidopsis thaliana	NP_195220.1	armadillo repeat only 1 protein [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002305501.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9T6C5

Fln msg:

Fln protein: MAERVKQMLASPIQLADEVSKTAEEAHSFKQECMEVKRQTDKLAALLRQAARASGGLYERPTGRITEEINQVLGKALVLVTKCRRNAVLKRVFTITSAAAFRKMNFLLDSSIGDVTWLLNVSASGEDRADHLGLPPIATNDPMLGLIWEQIARLHTGSSPEEKADAAASLVSLAQDNERNGKLIVEEGGIGPLLKLIKEGTVEGQEAAAKAIGKLGKDPERVRQIIQEGVCSVFAKVLKDGGPMKVQSMVAWALSELVSHDPESQEHFAQSGIIRSLVGHLAFETVPDHSKYTVGAKAMSMQSVVNLAAKDNNRLTQPQPQPQPQPHPHPHPHPQTQTQPPLLHSNSDNSDSPNPQHDNGTKYATRRDIGLPSLSGLNLKGKEAEDPLVKASMKAEAARALWKLAKNNIKTCKSITESKALLCFAILLEKGKGEVQYNSAMAVMEIAAVAEEYPDLRRSAFKTNSPAAKALVDQLLRIIQDDDSESQLLIPCIKSIGCLARTFPARETRLIHPLVKHLDNRDLYVNGEAATALGKFACRENYLHMEHSKAIIESSSAPHLVQLVYFGEGMAQVPALVLLCYLALHVGDSEALAKAEALSALEWASKQVSLIQNPHLESLLPEAKSRLELYQSRGYHRFH*

Protein Length: 641

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGATCTACAAAGATCCCGGGGTCGAACCCCTTCCTTAACCAAACAAAAAAGGGACGAGGGTTTTCATAAGTCTTTCGGTTGCGCTTACACTCCTGTCCGGGGTGAACCTGCAGGAGGCGTCGAAGAGCAGATCAGTATGTATGACTGAAGCAACGGGTGGCGTTGTGAAGGAACGAATTGGAAACCCCTTTTTTTTAATCGAATCAAGGGCTGAAGAATTCAGAGCTGAAAGTGGTTCGTTGGGTGCGGGATTGATCCGAAAGAAATTAAGGTGAGTGGATTTGAATGAAGTGATAATTAATAGA_-_ATGGCGGAGAGAGTAAAGCAGATGCTGGCATCGCCCATCCAGTTGGCGGATGAGGTATCGAAAACGGCGGAAGAAGCTCATTCTTTCAAGCAGGAATGCATGGAGGTGAAGAGACAGACGGACAAATTAGCTGCTCTGCTGCGACAAGCGGCACGGGCGTCGGGGGGCCTGTATGAGAGGCCAACAGGTCGAATTACAGAAGAAATAAATCAAGTTCTGGGAAAAGCTCTGGTTTTGGTGACGAAATGCAGGCGCAATGCGGTTCTGAAGAGGGTTTTCACCATAACATCGGCGGCAGCATTCAGAAAAATGAATTTCTTACTGGACAGCTCGATCGGGGACGTGACGTGGCTTCTGAATGTGTCTGCGAGCGGGGAAGATCGAGCAGATCATTTGGGTTTGCCTCCCATAGCGACAAATGATCCGATGCTTGGCCTGATCTGGGAACAGATAGCACGGTTGCACACAGGGAGCAGTCCCGAGGAGAAAGCGGACGCGGCAGCCTCATTGGTTTCTCTGGCCCAGGACAACGAGCGAAATGGGAAATTGATTGTCGAAGAAGGCGGAATCGGCCCCTTGCTCAAGCTTATCAAGGAAGGCACCGTTGAAGGCCAGGAAGCCGCGGCAAAAGCCATCGGGAAACTTGGTAAGGATCCTGAACGCGTTAGGCAGATAATTCAGGAGGGTGTGTGCTCTGTTTTTGCGAAGGTCTTGAAGGACGGTGGTCCAATGAAGGTCCAGAGTATGGTCGCCTGGGCTTTGTCTGAGTTGGTCTCCCATGATCCCGAATCGCAGGAGCATTTTGCCCAGAGTGGAATTATCAGGTCACTTGTTGGTCATTTGGCCTTTGAGACAGTTCCTGATCATAGCAAGTATACTGTCGGTGCCAAGGCCATGAGCATGCAATCTGTTGTCAATCTCGCAGCCAAAGATAATAATCGTCTTACTCAGCCTCAGCCTCAGCCTCAGCCTCAGCCTCATCCTCATCCTCATCCTCATCCTCAGACTCAGACTCAGCCGCCCCTCCTGCATAGTAATAGTGATAATAGCGATTCCCCAAATCCACAACATGATAATGGCACCAAATATGCAACCCGCAGAGATATAGGATTGCCCTCTTTATCAGGCCTGAATCTGAAAGGCAAGGAAGCCGAGGATCCACTAGTAAAGGCTTCAATGAAGGCGGAAGCCGCCAGGGCTCTTTGGAAACTTGCTAAGAACAACATAAAGACTTGTAAAAGTATAACGGAGTCCAAGGCCTTGCTTTGCTTTGCAATACTATTGGAAAAGGGCAAAGGTGAAGTGCAGTATAATTCGGCCATGGCAGTGATGGAGATTGCAGCTGTAGCAGAGGAGTATCCTGATTTGAGAAGATCTGCGTTTAAGACCAACTCTCCTGCTGCTAAGGCATTGGTTGATCAGCTTCTCAGAATTATACAAGATGATGATTCTGAATCTCAACTTTTGATTCCCTGCATAAAATCGATTGGATGCCTTGCTCGGACCTTCCCTGCTAGAGAAACCAGGCTCATCCATCCGCTTGTGAAACATCTAGATAATAGAGACTTATATGTGAACGGAGAGGCAGCCACTGCACTGGGCAAGTTTGCCTGCAGGGAAAATTATCTACATATGGAGCATTCCAAAGCCATCATTGAGTCGTCTAGTGCTCCGCACTTGGTGCAGCTTGTGTACTTTGGAGAAGGGATGGCTCAGGTTCCTGCGTTGGTTCTTCTCTGTTACCTTGCTTTACATGTTGGTGACAGTGAAGCTCTTGCCAAAGCAGAAGCATTGTCAGCGCTGGAATGGGCATCTAAGCAGGTTTCTCTCATTCAGAATCCTCATTTGGAGAGCCTGCTTCCAGAGGCCAAAAGCCGTCTCGAACTCTACCAATCCAGAGGATATCATCGATTCCATTGA___TTTGAGTTGAATTGGGAGGACATGAGATGGTATTAGCTTAGGTAATTTGTTTAACTCTCCCTTGAGCTACAATTAAAGAAAAATTTTGTTCCTATGGTGTCTATCTGTGAGGGAGGTGTGTTTCTAATTTGTATATTGTAAAGAAATTGATTTATTTGGTTTGATTGATTCATGACTTTTTGAAGAAATTTACTTGACCTGCGCTTGTATGGAATATTCTTTTGACATG

Fln Alignment:

Contig5895___MAERVKQMLASPIQLADEVSKTAEEAHSFKQECMEVKRQTDKXXXXXXXXXXXSGGLYERPTGRITEEINQVLGKALVLVTKCRRNAVLKRVFTITSAAAFRKMNFLLDSSIGDVTWLLNVSASGEDRAD-HLGLPPIATNDPMLGLIWEQIARLHTGSSPEEKADAAASLVSLAQDNERNGKLIVEEGGIGPLLKLIKEGTVEGQEAAAKAIGKLGKDPERVRQIIQEGVCSVFAKVLKDGGPMKVQSMVAWALSELVSHDPESQEHFAQSGIIRSLVGHLAFETVPDHSKYTVGA-KAMS-----------------MQSVVNLAAKDNN-RLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTKYATRRDIGLPSLSGLNLKGKEAEDPLVKASMKAEAARALWKLAKNNIKTCKSITESKALLCFAILLEKGKGEVQYNSXXXXXXXXXXXXXYPDLRRSAFKTNSPAAKALVDQLLRIIQDDDSESQLLIPCIKSIGCLARTFPARETRLIHPLVKHLDNRDLYVNGEAATALGKFACRENYLHMEHSKAIIESSSAPHLVQLVYFGEGMAQVPALVLLCYLALHVGDXXXXXXXXXXXXXXXXXXQVSLIQNPHLESLLPEAKSRLELYQSRGYHRFH
B9T6C5______________MADLVKQILARPIQLADQVIKSADEASSFKQECAELKSKTEKLATLLRQAARASPDLYERPTRRIIEDTEQVLDKALTLVQKCRANGLMKRVFTIIPAAAFRKMSSQLENSIGDVSWLLRVSASADERDDEYLGLPPIAANEPILCLIWEQIAILSTGSL-DDRSDAAASLVSLARDNDRYGKLILEEGGVLPLLKLVKEGKMEGQENAARAIGLLGRDPESVEYMIQTGVCTVFAKILKEG-PMKVQAVVAWAVSELAANYPKCQDLFAQHNIIRLLVGHLAFETVQEHSKYAIASHKAISIHAVVLASNNSTNVASDMNKVVSAATDDDHSRIPHPMGNQTPNQLHNVVTNTMAANAASKAPQRLNSNGANVKSNSNGFNGLKQNHQQNHSLSGVSLKGRELEDPATKANMKAMAARALWHLAKGNSPICRNITESRALLCFAVLLEKGPEDVQFHSAMALMEITAVAEKDADLRRSAFKPNSPACKAVIDQLLKIIEKADSD--LLLPCIKAIGNLARTFRATETRMIAPLVKLLDEREAEISREASIALTKFACTENYLHFDHSKAIIQAGGAKHLIQLVYFGEHIVQLSALLLLCYIARHVPDSEELAQAEVLTVLEWASKQSFVTQDEMFDSLLPDAKSRLELYQSRGSRGFH

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
25	33		66		0.997452
95		25		75	0.996473
104			20	80	0.995493
135		85		14	0.993533
192	85		14		0.993533
399			50	50	1.0
564		25		75	0.996473
629			75	25	0.996473
745	25		75		0.996473
747		75		25	0.996473
748	75		25		0.996473
749	75			25	0.996473
785			80	20	0.995493
786		80	20		0.995493
787	80		20		0.995493
788		80	20		0.995493
993	11		88		0.923564
995	11		88		0.923564
1641	14			85	0.993533
1658	87			12	0.992554
1722	87		12		0.992554
1865		85	14		0.993533
1866		85	14		0.993533
2273		90		10	0.90298
2283		11		88	0.923564
2354	20	80			0.995493
2357	80		20		0.995493
2358			20	80	0.995493
2435			33	66	0.997452
2436			66	33	0.997452
2440	66			33	0.997452
2443	33			66	0.997452
2466			66	33	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
1275	1308	CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC CTCA	34
1304	1332	CCTCAT CCTCAT CCTCAT CCTCAT CCTCA	29

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain