SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5801

Length: 3215 nt

UniGene Fasta

>sp_v3.0_unigene5801
ATGGGGAGAGCATTAATAATGCAAGATCGGAGGCATTATGGGGAGAGTTAATTTCAAATATAGCTCGAGTGGCTGCGACCGTATTTGTTTTGGAACTAGTATATCATGAAAGAGTGAGAGACCATATCCGTACTCATTACGCTGCCCTGTTTAATTCAGATCTCCAATTGTGTCCAGGCCGCTGGACAAAATCCCCATCTGTGAACGACCTGAAGGATTATCTCAGGGTTGTTCACTGGATCGGCCCTCGATAAACTCTCAACTTGATAAGGGTTTTGGCCGATCCACAGAATGGATTTCATGAAGGTTTTCGATCAAACCGTCAGAGATATAAAGAGAGAGGTGAACAAGAAGGTTCTCAAGGTTCCTGAAATTGAACAGAAGGTTCTCGATGCAACAAGCAATGAACCTTGGGGTCCACATGGGTCGCTTATGGCGGAAATTGCTCAGGCTACAAGAAAATTTAACGAATCCCCATTGGTTATGGGTGTTCTTTGGACGAGGATAACTGATACTGGCAGGAACTGGCGTCATGTTTACAAGGCACTTACTGTATTGGAGTATTTGGTGGCTCATGGATCAGAGCGTATTATCGATGAGATTCGGGAGCATAACTACCAAATCTCGACACTTTCAGATTTCCAATATGTTGAGCCAAACGGAAAGGACCAGGGAATCAACGTGAGAAAGAAGGCTCAGACTATTGTATCTCTCATCAATGACAAAGAGAAAATACAAGAAGTGAGAGAAAAAGCAGCAGCCAATAGAGACAAATATTGTGGGCTGTCATCAACTGGAGGATTTCACAAGCCTAGTTCATACTCAGGCTTTGGTGGTGGATATGATGATGATCGACGTGATGATGATCGGTATGGAAGTCGAAATACGGGCAGTGACAAAGATTGGAAGAGTTGGGATGGAGATCGTTATGGTAGAGATGGTGGTGATGGTTACAGTAGGAGTGGAGATCGATACAAAGATGATGATTTTGGGAGAATCAGGGATCATGAAGATGTTCGAAATAACTCTAAAAACGAATATGATGATTACGTTTCTTCGAGGTATTCAAAAAAGCAGTCAGAAAGGAAATTGGAAGCTCCTCCTCGTTATCAAGACTCAATTGATGATCCTGGCTGTGAGGAAATGGCTCATGGTAGTGTGGCAGCTACTGCAACAAAATCATCAAGTTTAGGTCAAAGCCAGGTTGCTACAAGAAGTGAAAAGAATGTTGTAACAGCTTCAATTAATAACGATGATGATTTTGATGACTTCAATCCTCGTGCCTCTTCTACATCAGCTGCTGCTTCTGTTCCAACTTTCACAGAGGATGACCTTTTTGGCCAGCCTTCAATGGGAGGGCGTACCGATGTCATGAAAGGAATACCTCCTCTGCCAAAGGCTGCAAATGCTCCTATTACTGCAGCTATGAGTGGTCCAAGCTCTGGGATAGATTTATTTGCAGACGCTAATTTAGGGCGTACGGATGTCATGAAAGGAATTCCTCCTCCACCAATGGCTGCAAATGCTCCTATTACTGCAGCTGTGAGTGGTCCAAACTCTGGGATAGATTTGTTTGCAGATGCTAATTTTAATGCGACTTTTGTGGCCCCATCAGTATCAGCCACCAACTCCCTTAATCAGCTTCCTGGTAATTTTAGTCAGTCTCAATATAACGCCCCTTTCCAATCACCTGAAGGCCTATTTGCTGCCCAAACATCAAGTACAGTATCTTTTACATCTCCCCTGACTTCTGGGATGAATGAAGGATCTGGTGCATTTGGAGCTGTGTCATCAAATTCCAATCCTCAGGCAGGTTTTGGCAATGCAGATCCCTTTGAAGGAAATTTATTCAGTGCCTTTGGAACTACTGTGCCTCCAGTGCAGGCCTCACAACCTCCCAGTATGTTTCAGACACAACCTTTGGCTCCAGCAGTAACTCAAGTATCGGAAAAACCTAATCTGCAATCTGCACAAGCTCAAAATTCAAGCACTACAGGTACTGCTAAATCTCAGCCACAGAAAGAAAAATTTCAACCGAAGTCATCAATCTGGGCCGACACATTAAGCCGTGGCTTAATTGACTTAAACATTACTGCACCAAAAAGCAATTCTCTGGCAAATATTGGCATCAATTTAGATTCCATTACTATGACGGAAAGGAAAGAAGACGAGAAGAAAACTTTCATGGGCTCTATGGGAAAACCCATGGGATCTGGTTCAGGCTTGGGTCGGGGAGGTGCAAGTACGTTAGCACCATCCGCTTCTCCTACGATGGGTACATATGGCACAGCTGTAGGCACAGGCTCTTATGGAGCAGGTGTGGGCATTGAAACAGGTATTGGTATGGGTGCCGGTGCTGGCTTGGGTATGCCAAAGGGACCTGAAGTGGGAATGACTCCAAGGATGGGCATGCCTGGAATGGGCTTGCAACCTCCCATGGGCATACCTGGAATGGGAATGCAACCTCCCATGGGCATGCCATCAGGAACTGGGACAGGGTTTGCAATGAACTATACAGTGGGCACAGGTCAGGGAGGCTTTCGTACTCAACAGCAACAGTTCGGTGGATTCAGTTGAGATTTTTTTTGTGAACCAATAATTTCTGAATCTGTTACCGTATTAAAGTGTTGGCTAATTGATCCCAATATTCACACTTTTGTAGTGAAGTAGTTATTTGGCATGTCACAAATATTATTTTCATGTATGTACAGGAGCTTATTGAGTCTCCTGAATGGAGATAAAGTACCATCAAGCTCAAAATATAAGCAGTAATTGAGCTGACAACAGTGTTGAAGAGCACTAGAAAAATTCGGTAACTTTTGTAGATTGATTTATTTTGTGCATAACATGCTCGGATCATGAAGGCTGCGCAGAAGATCTTGAAGATCTTAGTTCGCTTTTTCAAAGTCCATTGTTACCTTTTTATCTCAAACGTTTATTGGTACTGAAAATGTTACTTATTTTGTATGAATCTTGTTACGAGTTATGTTGAATATGCTACAACTCAGTAATGTTTGAGATTTATGTGATGTTGTTAGCATTTGTCATTTTTTCGTTAGAGGAATTACTGCTTGTACATTTTATACAGATGTCGAACTGAATGATTTAGTTGGCAAGCTAGATTTCTAGCTGTTTCCTTTGTGTTACTGAAACGGACTTTTCTGCCTGATTACTGTTTAGGCGAGTATTTTGAACTGCTTCAACTTATGTGAACT

Ace file of the UniGene sp_v3.0_unigene5801

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	clathrin interactor EPSIN 1 [Arabidopsis thaliana] sp\|Q8VY07.1\|EPN1_ARATH RecName: Full=Clathrin interactor EPSIN 1; AltName: Full=EPSIN-related 1 gb\|AAL67001.1\| putative clathrin binding protein [Arabidopsis thaliana] gb\|AAM20255.1\| putative clathrin bin	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%

Source	Gene names
Sma3	At2g43160; MICPUCDRAFT_7385; PHYPADRAFT_115654; PHYPADRAFT_180155; POPTRDRAFT_246516; POPTRDRAFT_819519;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Epsin domain, N-terminal	IPR001026	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G11710.1	ENTH/VHS family protein chr5:3772981-3776316 FORWARD LENGTH=560	72%
RefSeq	Arabidopsis thaliana	NP_196732.2	clathrin interactor EPSIN 1 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002320454.1	predicted protein, partial [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLE6

Fln msg: your sequence is longer than subject: 762 - 402

Fln protein: MDFMKVFDQTVRDIKREVNKKVLKVPEIEQKVLDATSNEPWGPHGSLMAEIAQATRKFNESPLVMGVLWTRITDTGRNWRHVYKALTVLEYLVAHGSERIIDEIREHNYQISTLSDFQYVEPNGKDQGINVRKKAQTIVSLINDKEKIQEVREKAAANRDKYCGLSSTGGFHKPSSYSGFGGGYDDDRRDDDRYGSRNTGSDKDWKSWDGDRYGRDGGDGYSRSGDRYKDDDFGRIRDHEDVRNNSKNEYDDYVSSRYSKKQSERKLEAPPRYQDSIDDPGCEEMAHGSVAATATKSSSLGQSQVATRSEKNVVTASINNDDDFDDFNPRASSTSAAASVPTFTEDDLFGQPSMGGRTDVMKGIPPLPKAANAPITAAMSGPSSGIDLFADANLGRTDVMKGIPPPPMAANAPITAAVSGPNSGIDLFADANFNATFVAPSVSATNSLNQLPGNFSQSQYNAPFQSPEGLFAAQTSSTVSFTSPLTSGMNEGSGAFGAVSSNSNPQAGFGNADPFEGNLFSAFGTTVPPVQASQPPSMFQTQPLAPAVTQVSEKPNLQSAQAQNSSTTGTAKSQPQKEKFQPKSSIWADTLSRGLIDLNITAPKSNSLANIGINLDSITMTERKEDEKKTFMGSMGKPMGSGSGLGRGGASTLAPSASPTMGTYGTAVGTGSYGAGVGIETGIGMGAGAGLGMPKGPEVGMTPRMGMPGMGLQPPMGIPGMGMQPPMGMPSGTGTGFAMNYTVGTGQGGFRTQQQQFGGFS*

Protein Length: 763

Fln nts: ATGGGGAGAGCATTAATAATGCAAGATCGGAGGCATTATGGGGAGAGTTAATTTCAAATATAGCTCGAGTGGCTGCGACCGTATTTGTTTTGGAACTAGTATATCATGAAAGAGTGAGAGACCATATCCGTACTCATTACGCTGCCCTGTTTAATTCAGATCTCCAATTGTGTCCAGGCCGCTGGACAAAATCCCCATCTGTGAACGACCTGAAGGATTATCTCAGGGTTGTTCACTGGATCGGCCCTCGATAAACTCTCAACTTGATAAGGGTTTTGGCCGATCCACAGA_-_ATGGATTTCATGAAGGTTTTCGATCAAACCGTCAGAGATATAAAGAGAGAGGTGAACAAGAAGGTTCTCAAGGTTCCTGAAATTGAACAGAAGGTTCTCGATGCAACAAGCAATGAACCTTGGGGTCCACATGGGTCGCTTATGGCGGAAATTGCTCAGGCTACAAGAAAATTTAACGAATCCCCATTGGTTATGGGTGTTCTTTGGACGAGGATAACTGATACTGGCAGGAACTGGCGTCATGTTTACAAGGCACTTACTGTATTGGAGTATTTGGTGGCTCATGGATCAGAGCGTATTATCGATGAGATTCGGGAGCATAACTACCAAATCTCGACACTTTCAGATTTCCAATATGTTGAGCCAAACGGAAAGGACCAGGGAATCAACGTGAGAAAGAAGGCTCAGACTATTGTATCTCTCATCAATGACAAAGAGAAAATACAAGAAGTGAGAGAAAAAGCAGCAGCCAATAGAGACAAATATTGTGGGCTGTCATCAACTGGAGGATTTCACAAGCCTAGTTCATACTCAGGCTTTGGTGGTGGATATGATGATGATCGACGTGATGATGATCGGTATGGAAGTCGAAATACGGGCAGTGACAAAGATTGGAAGAGTTGGGATGGAGATCGTTATGGTAGAGATGGTGGTGATGGTTACAGTAGGAGTGGAGATCGATACAAAGATGATGATTTTGGGAGAATCAGGGATCATGAAGATGTTCGAAATAACTCTAAAAACGAATATGATGATTACGTTTCTTCGAGGTATTCAAAAAAGCAGTCAGAAAGGAAATTGGAAGCTCCTCCTCGTTATCAAGACTCAATTGATGATCCTGGCTGTGAGGAAATGGCTCATGGTAGTGTGGCAGCTACTGCAACAAAATCATCAAGTTTAGGTCAAAGCCAGGTTGCTACAAGAAGTGAAAAGAATGTTGTAACAGCTTCAATTAATAACGATGATGATTTTGATGACTTCAATCCTCGTGCCTCTTCTACATCAGCTGCTGCTTCTGTTCCAACTTTCACAGAGGATGACCTTTTTGGCCAGCCTTCAATGGGAGGGCGTACCGATGTCATGAAAGGAATACCTCCTCTGCCAAAGGCTGCAAATGCTCCTATTACTGCAGCTATGAGTGGTCCAAGCTCTGGGATAGATTTATTTGCAGACGCTAATTTAGGGCGTACGGATGTCATGAAAGGAATTCCTCCTCCACCAATGGCTGCAAATGCTCCTATTACTGCAGCTGTGAGTGGTCCAAACTCTGGGATAGATTTGTTTGCAGATGCTAATTTTAATGCGACTTTTGTGGCCCCATCAGTATCAGCCACCAACTCCCTTAATCAGCTTCCTGGTAATTTTAGTCAGTCTCAATATAACGCCCCTTTCCAATCACCTGAAGGCCTATTTGCTGCCCAAACATCAAGTACAGTATCTTTTACATCTCCCCTGACTTCTGGGATGAATGAAGGATCTGGTGCATTTGGAGCTGTGTCATCAAATTCCAATCCTCAGGCAGGTTTTGGCAATGCAGATCCCTTTGAAGGAAATTTATTCAGTGCCTTTGGAACTACTGTGCCTCCAGTGCAGGCCTCACAACCTCCCAGTATGTTTCAGACACAACCTTTGGCTCCAGCAGTAACTCAAGTATCGGAAAAACCTAATCTGCAATCTGCACAAGCTCAAAATTCAAGCACTACAGGTACTGCTAAATCTCAGCCACAGAAAGAAAAATTTCAACCGAAGTCATCAATCTGGGCCGACACATTAAGCCGTGGCTTAATTGACTTAAACATTACTGCACCAAAAAGCAATTCTCTGGCAAATATTGGCATCAATTTAGATTCCATTACTATGACGGAAAGGAAAGAAGACGAGAAGAAAACTTTCATGGGCTCTATGGGAAAACCCATGGGATCTGGTTCAGGCTTGGGTCGGGGAGGTGCAAGTACGTTAGCACCATCCGCTTCTCCTACGATGGGTACATATGGCACAGCTGTAGGCACAGGCTCTTATGGAGCAGGTGTGGGCATTGAAACAGGTATTGGTATGGGTGCCGGTGCTGGCTTGGGTATGCCAAAGGGACCTGAAGTGGGAATGACTCCAAGGATGGGCATGCCTGGAATGGGCTTGCAACCTCCCATGGGCATACCTGGAATGGGAATGCAACCTCCCATGGGCATGCCATCAGGAACTGGGACAGGGTTTGCAATGAACTATACAGTGGGCACAGGTCAGGGAGGCTTTCGTACTCAACAGCAACAGTTCGGTGGATTCAGTTGA___GATTTTTTTTGTGAACCAATAATTTCTGAATCTGTTACCGTATTAAAGTGTTGGCTAATTGATCCCAATATTCACACTTTTGTAGTGAAGTAGTTATTTGGCATGTCACAAATATTATTTTCATGTATGTACAGGAGCTTATTGAGTCTCCTGAATGGAGATAAAGTACCATCAAGCTCAAAATATAAGCAGTAATTGAGCTGACAACAGTGTTGAAGAGCACTAGAAAAATTCGGTAACTTTTGTAGATTGATTTATTTTGTGCATAACATGCTCGGATCATGAAGGCTGCGCAGAAGATCTTGAAGATCTTAGTTCGCTTTTTCAAAGTCCATTGTTACCTTTTTATCTCAAACGTTTATTGGTACTGAAAATGTTACTTATTTTGTATGAATCTTGTTACGAGTTATGTTGAATATGCTACAACTCAGTAATGTTTGAGATTTATGTGATGTTGTTAGCATTTGTCATTTTTTCGTTAGAGGAATTACTGCTTGTACATTTTATACAGATGTCGAACTGAATGATTTAGTTGGCAAGCTAGATTTCTAGCTGTTTCCTTTGTGTTACTGAAACGGACTTTTCTGCCTGATTACTGTTTAGGCGAGTATTTTGAACTGCTTCAACTTATGTGAACT

Fln Alignment:

Contig5801___IHRMDFMKVFDQTVRDIKREVNKKVLKVPEIEQKVLDATSNEPWGPHGSLMAEIAQATRKFNESPLVMGVLWTRIT--DTGRNWRHVYKALTVLEYLVAHGSERIIDEIREHNYQISTLSDFQYVEPNGKDQGINVRKKAQTIVSLINDKEKIQEVREKA
B8LLE6______________LHLGQFKKQASFFIREKLKTARLVLTDVTEAELMTEEATNNDPWGPETRRMAEISRAAFEVDDYSRIVNILHKRLSVLDT-KSWRETFKTLVLLEYLLTHGPESFAADFRSEKDVLHQLTHFQHVDDLGFDWGQSIQRKAERILELLNQEKLLKEERNRA

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
130		83	16		0.994512
131		83	16		0.994512
133			16	83	0.994512
152			16	83	0.994512
208		88		11	0.923564
211		88	11		0.923564
212		88	11		0.923564
231			11	88	0.923564
453	10		90		0.90298
456	90			10	0.90298
458	90		10		0.90298
459	90	10			0.90298
512		11		88	0.923564
556		12		87	0.992554
560			87	12	0.992554
564	12			87	0.992554
566			12	87	0.992554
1027	50		50		1.0
1037		85		14	0.993533
1039	85		14		0.993533
1040	85		14		0.993533
1212	88		11		0.923564
1252	87		12		0.992554
1328	11		88		0.923564
1361	12		87		0.992554
1363	12		87		0.992554
1365	87			12	0.992554
1610		85	14		0.993533
1743	12	87			0.992554
1745	12	87			0.992554
1746		87		12	0.992554
1967	88			11	0.923564
2101		75		25	0.996473
2102	50	25		25	0.995533
2106	80			20	0.995493
2108		87		12	0.992554
2173	87		12		0.992554
2390	14		85		0.999981
2391		14	85		0.999981
2394	85			14	0.999981
2486	87		12		0.999964
2534		8	91		0.999766
2535			91	8	0.999766
2536		8	91		0.999807
2789			94	5	0.997984
2924		40		60	1.0
2975	12	87			0.999964
2983		13	86		0.999973
3023	14			85	0.993533
3096		33	66		0.997452
3139	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain