SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5786

Length: 2373 nt

UniGene Fasta

>sp_v3.0_unigene5786
CAATTCACATGAAGTACAATGCAAATGCCCAACAACCCATCTGCTATCTCATCTCAGAGGACAATCCCCCTCAAGAGCAGGAAAAAAGCTTGGAAGATATACAGGAATACATAGAAGCTGAAAACATGAGGCTGGAGCAGGAAGCTTGCCAATTTTCTGCAAAAGAAATAATCATAAAGATAGACTACAAGTACTGTCCCAACTTAACTATTATTGATACACCTGGTCTGATTGCTGCTGCACCAGGCCGTAAAAACAGAGTTTTACAGTCTCAAGCACGTGCTGTAGAGGCACTTGTTCGCAGCAAGATGCAGCATAAAGAATATATTATATTATGCCTTGAAGACTGCAGTGATTGGAGCAATGCGACCACCCGTCGAGTTGTTATGCAGGTTGACCCTGAGATGTCACGAACTGTGATTGTTTCAACAAAGTTGGATACAAGGATTCCACAATTTGGACGGTCGCCAGATGTGGAACTCTTTCTGAGGCCACCAGCAAGTGTTCTTGATGGAAGCATATTGGGAGAAACTCCTTTTTTCACGTCAGTACCATCTGGAAGAGTTGGAGCAAATCGAGATGCCGTTTATAGATCAAATGATCAATTCAAAGAAGCTGTTTCCTTGAGAGAAGCCCAGGATGTGGCAGCTTTGGAAGAGAAGTTAGGACGACCTTTGTTAAAGGGAGAGTGTGCTAGAATTGGTATTAGCAAACTCAAATGTTTCTTGGAAGAACTTTTACAACGAAGGTATATGGATAATGTTCCATTGATTGTCCCCCTTTTGGATAAGGAGTCCCGGAATATCAAAAGAAAGCTCCGACAGATAATGCATGAACTTGGTAATCTGGATGAAGCAAAACTGAAGGAGAAGGGTCGTCTTTTTCGTGATTCCTTTCTGGCTAAGCTTTCATTGCTTTTAAAGGGAACTGTCGTAGCTCCTCCTGAACGATTTGGAGAGACCCTGCAAGATGAGCGAGTTCATGGAGGAGCATTCTTAGGCCCGGATGGTGTTCAGATCCCTTACAAACTGATGCCTAATGGTGGAATGCGCCTTTATGGAGGCGCTCAATATCACAGGGCCATGGCAGAATTCCGTTTTGTTGTTGGAAGCATTAAATGCCCATCTATAAGCCGAGAGGAGATTATAAATGCATGTGGAGTAGAAGATATTCATGATGGTACAAATTATTTTAGAACTGCTTGTGTGATAGCTGTTGCAAAAGCACGAGACACTTTTGAGCCGTTTCTTCATCAACTAGGATTCAGGCTATCCCACATTTTAAGGAGGCTGCTTCCGATTACTCTGTACTTACTTCAGAAAGACGGCGAATACCTAAGTGGCCATGATGTGTTTGTCAGGCGTGTCACAACTGCATTCTACTCTTTTGCTGAGGCTACAGAACAGTCTTGCCGAGAGAAATGTATGGAAGACCTTACAAGTACAACACGCTATGTCACCTGGTCTCTTCATAACAAGAATCGAGCTGGGCTGCGGCAGTTTCTAGATTCCTTTGCGAGTAGTGAACAGACATCCCTCAATAATGCTGCTATAATAGGGGCAACTGCTCAGGATTTGGCAGTTGGATCAAGTGCAAATGGGAACAAGCAAGACACTAAGCCTCGTTCAGAGACTAAAACTAACCAATCTTTTTCAAGCACAGAGGTGTCAGGAGTAAACCAAACAGCTGAAACACGTCTTGTTGACTTGTTGGAAAGCACGCTTTGGAATCGCAGACTTGCACCTTCCTCTGAACAGATTGTAAATGCTTTAGTGGCACAGATTTTCCAAGGCATCAGGGATCATTTTTTGACATCTGCAGAACTAAAGTTCAATTGCTTCTTCCTCATGCCAGTAGTGGACAAGTTTCCAGCGCTGCTACGTGAAGACTTGGAGGCTGCATTTGAAGATGACTTGGATAATGCATTTGATATAGCAAATGCACGAAGGGCTTTAGACCAACAGAAAAGGGATCTAGAGATTGAACTTCGGAGGATTGAGAGACTTAAAGAAAAATTTGAAGCCATTCATCATGATCTAAGTGGATATCAATCCTCTTCTGGAAAAGATATTGCAAATCAGATTACTATGTTAAACATTCATGAGAGAATTTAAGTGCGATTACTTTGCTTAAGCTAATATTTTGTTATATTTCATGAGGTTCAACTTGCACTCTGCTGAGGCATGTTATTGGATTCTCTTTCATTGTGTTGTAAAATAAGTGGAAGTCAATACTTTGTACTCGGACTCTCCAACAAAAAAATGCACATTTAAAAGTTTTATGCAAACTTAAAAGAGAGGCTTTGAATTTGATGGTATTCTATATTTGTTAATCCAATTTATATTAGATGACAATGGACATAAATTGCTTACC

Ace file of the UniGene sp_v3.0_unigene5786

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SRI2_RICCO	-	-	0.0	67%
FL-Next	sp=Dynamin-like protein ARC5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%

Source	Gene names
Sma3	ARC5; At3g19720; CHLREDRAFT_195429; CpDnm; DRP5B; GSVIVT00031524001; LOC_Os12g07880; MICPUCDRAFT_47958; MICPUN_106231; OSTLU_31402; Os12g0178700; OsI_37679; OsJ_35420; Ot04g05060; PHYPADRAFT_170855; PHYPADRAFT_179882; PHYPADRAFT_197754; POPTRDRAFT_578215;

Source	GOs	Term	Type	Identity
Sma3	chloroplast outer membrane	GO:0009707	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	catabolic process	GO:0009056	Biological Process	-
Sma3	chloroplast fission	GO:0010020	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Aryldialkylphosphatase, zinc-binding site	IPR017947	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G19720.1	ARC5, DRP5B P-loop containing nucleoside triphosphate hydrolases superfamily protein chr3:6850591-6855389 REVERSE LENGTH=777	70%
RefSeq	Arabidopsis thaliana	NP_188606.2	protein ARC5 [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002309632.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q84N64

Fln msg: your sequence is shorter than subject: 704 - 777

Fln protein: IHMKYNANAQQPICYLISEDNPPQEQEKSLEDIQEYIEAENMRLEQEACQFSAKEIIIKIDYKYCPNLTIIDTPGLIAAAPGRKNRVLQSQARAVEALVRSKMQHKEYIILCLEDCSDWSNATTRRVVMQVDPEMSRTVIVSTKLDTRIPQFGRSPDVELFLRPPASVLDGSILGETPFFTSVPSGRVGANRDAVYRSNDQFKEAVSLREAQDVAALEEKLGRPLLKGECARIGISKLKCFLEELLQRRYMDNVPLIVPLLDKESRNIKRKLRQIMHELGNLDEAKLKEKGRLFRDSFLAKLSLLLKGTVVAPPERFGETLQDERVHGGAFLGPDGVQIPYKLMPNGGMRLYGGAQYHRAMAEFRFVVGSIKCPSISREEIINACGVEDIHDGTNYFRTACVIAVAKARDTFEPFLHQLGFRLSHILRRLLPITLYLLQKDGEYLSGHDVFVRRVTTAFYSFAEATEQSCREKCMEDLTSTTRYVTWSLHNKNRAGLRQFLDSFASSEQTSLNNAAIIGATAQDLAVGSSANGNKQDTKPRSETKTNQSFSSTEVSGVNQTAETRLVDLLESTLWNRRLAPSSEQIVNALVAQIFQGIRDHFLTSAELKFNCFFLMPVVDKFPALLREDLEAAFEDDLDNAFDIANARRALDQQKRDLEIELRRIERLKEKFEAIHHDLSGYQSSSGKDIANQITMLNIHERI*

Protein Length: 705

Fln nts: CAATTCACATGAAGTACAATGCAAATGCCCAACAACCCATCTGCTATCTCATCTCAGAGGACAATCCCCCTCAAGAGCAGGAAAAAAGCTTGGAAGATATACAGGAATACATAGAAGCTGAAAACATGAGGCTGGAGCAGGAAGCTTGCCAATTTTCTGCAAAAGAAATAATCATAAAGATAGACTACAAGTACTGTCCCAACTTAACTATTATTGATACACCTGGTCTGATTGCTGCTGCACCAGGCCGTAAAAACAGAGTTTTACAGTCTCAAGCACGTGCTGTAGAGGCACTTGTTCGCAGCAAGATGCAGCATAAAGAATATATTATATTATGCCTTGAAGACTGCAGTGATTGGAGCAATGCGACCACCCGTCGAGTTGTTATGCAGGTTGACCCTGAGATGTCACGAACTGTGATTGTTTCAACAAAGTTGGATACAAGGATTCCACAATTTGGACGGTCGCCAGATGTGGAACTCTTTCTGAGGCCACCAGCAAGTGTTCTTGATGGAAGCATATTGGGAGAAACTCCTTTTTTCACGTCAGTACCATCTGGAAGAGTTGGAGCAAATCGAGATGCCGTTTATAGATCAAATGATCAATTCAAAGAAGCTGTTTCCTTGAGAGAAGCCCAGGATGTGGCAGCTTTGGAAGAGAAGTTAGGACGACCTTTGTTAAAGGGAGAGTGTGCTAGAATTGGTATTAGCAAACTCAAATGTTTCTTGGAAGAACTTTTACAACGAAGGTATATGGATAATGTTCCATTGATTGTCCCCCTTTTGGATAAGGAGTCCCGGAATATCAAAAGAAAGCTCCGACAGATAATGCATGAACTTGGTAATCTGGATGAAGCAAAACTGAAGGAGAAGGGTCGTCTTTTTCGTGATTCCTTTCTGGCTAAGCTTTCATTGCTTTTAAAGGGAACTGTCGTAGCTCCTCCTGAACGATTTGGAGAGACCCTGCAAGATGAGCGAGTTCATGGAGGAGCATTCTTAGGCCCGGATGGTGTTCAGATCCCTTACAAACTGATGCCTAATGGTGGAATGCGCCTTTATGGAGGCGCTCAATATCACAGGGCCATGGCAGAATTCCGTTTTGTTGTTGGAAGCATTAAATGCCCATCTATAAGCCGAGAGGAGATTATAAATGCATGTGGAGTAGAAGATATTCATGATGGTACAAATTATTTTAGAACTGCTTGTGTGATAGCTGTTGCAAAAGCACGAGACACTTTTGAGCCGTTTCTTCATCAACTAGGATTCAGGCTATCCCACATTTTAAGGAGGCTGCTTCCGATTACTCTGTACTTACTTCAGAAAGACGGCGAATACCTAAGTGGCCATGATGTGTTTGTCAGGCGTGTCACAACTGCATTCTACTCTTTTGCTGAGGCTACAGAACAGTCTTGCCGAGAGAAATGTATGGAAGACCTTACAAGTACAACACGCTATGTCACCTGGTCTCTTCATAACAAGAATCGAGCTGGGCTGCGGCAGTTTCTAGATTCCTTTGCGAGTAGTGAACAGACATCCCTCAATAATGCTGCTATAATAGGGGCAACTGCTCAGGATTTGGCAGTTGGATCAAGTGCAAATGGGAACAAGCAAGACACTAAGCCTCGTTCAGAGACTAAAACTAACCAATCTTTTTCAAGCACAGAGGTGTCAGGAGTAAACCAAACAGCTGAAACACGTCTTGTTGACTTGTTGGAAAGCACGCTTTGGAATCGCAGACTTGCACCTTCCTCTGAACAGATTGTAAATGCTTTAGTGGCACAGATTTTCCAAGGCATCAGGGATCATTTTTTGACATCTGCAGAACTAAAGTTCAATTGCTTCTTCCTCATGCCAGTAGTGGACAAGTTTCCAGCGCTGCTACGTGAAGACTTGGAGGCTGCATTTGAAGATGACTTGGATAATGCATTTGATATAGCAAATGCACGAAGGGCTTTAGACCAACAGAAAAGGGATCTAGAGATTGAACTTCGGAGGATTGAGAGACTTAAAGAAAAATTTGAAGCCATTCATCATGATCTAAGTGGATATCAATCCTCTTCTGGAAAAGATATTGCAAATCAGATTACTATGTTAAACATTCATGAGAGAATTTAA___GTGCGATTACTTTGCTTAAGCTAATATTTTGTTATATTTCATGAGGTTCAACTTGCACTCTGCTGAGGCATGTTATTGGATTCTCTTTCATTGTGTTGTAAAATAAGTGGAAGTCAATACTTTGTACTCGGACTCTCCAACAAAAAAATGCACATTTAAAAGTTTTATGCAAACTTAAAAGAGAGGCTTTGAATTTGATGGTATTCTATATTTGTTAATCCAATTTATATTAGATGACAATGGACATAAATTGCTTACC

Fln Alignment:

Contig5786___IHMKYNANAQQPICYLISEDNPPQEQEKSLEDIQEYIEAENMRLEQEACQ-FSAKEIIIKIDYKYCPNLTIIDTPGLIAAAPGRKNRVLQSQARAVEALVRSKMQHKEYIILCLEDCSDWSNATTRRVVMQVDPEMSRTVIVSTKLDTRIPQFGRSPDVELFLRPPASVLDGSILGETPFFTSVPSGRVGANRDAVYRSNDQFKEAVSLREAQDVAALEEKLGRPLLKGECARIGISKLKCFLEELLQRRYMDNVPLIVPLLDKESRNIKRKLRQIMHELGNLDEAKLKEKGRLFRDSFLAKLSLLLKGTVVAPPERFGETLQDERVHGGAFLGPDGVQIPYKLMPNGGMRLYGGAQYHRAMAEFRFVVGSIKCPSISREEIINACGVEDIHDGTNYFRTACVIAVAKARDTFEPFLHQLGFRLSHXXXXXXXXXXXXXQKDGEYLSGHDVFVRRVTTAFYSFAEATEQSCREKCMEDLTSTTRYVTWSLHNKNRAGLRQFLDSFASSEQTSLNNAAIIGATAQDLAVGSSANGNKQDTKPRSETKTNQSFSSTEVSGVNQTAETRLVDLLESTLWNRRLAPSSEQIVNALVAQIFQGIRDHFLTSAELKFNCFFLMPVVDKFPXXXXXXXXXXXXXXXXXXXXIANARRALDQQ
Q84N64______________LHMKYDPQCQFPLCHLGSDDDPSVSLPKSLSQIQAYIEAENMRLEQEPCSPFSAKEIIVKVQYKYCPNLTIIDTPGLIAPAPGLKNRALQVQARAVEALVRAKMQHKEFIILCLEDSSDWSIATTRRIVMQVDPELSRTIVVSTKLDTKIPQFSCSSDVEVFLSPPASALDSSLLGDSPFFTSVPSGRVGYGQDSVYKSNDEFKQAVSLREMEDIASLEKKLGRLLTKQEKSRIGISKLRLFLEELLWKRYKESVPLIIPLLGKEYRSTVRKLDTVSKELSSLDEAKLKERGRTFHDLFLTKLSLLLKGTVVAPPDKFGETLQDERTQGGAFVGTDGLQFSHKLIPNAGMRLYGGAQYHRAMAEFRFLVGAIKCPPITREEIVNACGVEDIHDGTNYSRTACVIAVAKARETFEPFLHQLGARLLHILKRLLPISVYLLQKEGEYLSGHEVFLKRVASAFNSFVESTEKSCRDKCMEDLASTTRYVTWSLHNKNRAGLRQFLDSFGGTEHNTTSGNAIGFSLPQD------ALGGTTDTKSRSDVKLSHLASNIDSGSSIQTTEMRLADLLDSTLWNRKLAPSSERIVYALVQQIFQGIREYFLASAELKFNCFLLMPIVDKLPALLREELENAFEDDLDSIFDITNLRQSLDQK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1330		77		22	0.999999
1847	10			90	0.90298
1848		10		90	0.90298
1849	10	90			0.90298
1850		90		10	0.90298
2035		11		88	0.923564
2075	87		12		0.992554
2108			83	16	0.994512
2140		50		50	1.0
2159	33	66			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain