SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5782

Length: 1802 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5782

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	myo-inositol monophosphatase like 1 [Arabidopsis thaliana] sp\|Q94F00.2\|IMPL1_ARATH RecName: Full=Phosphatase IMPL1, chloroplastic; AltName: Full=Protein MYO-INOSITOL MONOPHOSPHATASE-LIKE 1; Flags: Precursor gb\|AEE31327.1\| myo-inositol monophosphatase like	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	inositol or phosphatidylinositol phosphatase activity	GO:0004437	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Inositol monophosphatase	IPR000760	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31190.1	IMPL1 myo-inositol monophosphatase like 1 chr1:11144861-11146800 FORWARD LENGTH=371	72%
RefSeq	Arabidopsis thaliana	NP_564376.1	myo-inositol monophosphatase like 1 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002332158.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKB8

Fln msg: your sequence is longer than subject: 385 - 269

Fln protein: MNSIRSTTNSLSPLPISSSRHLSHPAFLPRTLTIIRSFGGQFRELSLSCLNKKQGQREVYSTIQNHGIKGARAAVTSVSTGNKYSKIGAQSTGSLSASELLNGVEAAAKRGAEVVMDAVSKPRNIDYKGTANLVTDTDRSSELAIQEVVRGKFKDHLILGEEGGFTGDPTSEYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGKPAAASVVEFAGGPLCWVTRTFSACAGGGAFCNGQQIHVSSTNEIERSLLVTGFGYEHGEAWEENMSLFKEFTHVSRGVRRLGAAAVDMCHVAFGIVEAYWEYRLKPWDMAAGALIVEEAGGMVTCMDGSDFCVFDRSILVSNGTLHEKLLERIAPPTKKLQQNGLDISHWFKPQDYKSDV*

Protein Length: 386

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATATACACACATTCACACAGTGCAAGAAAGCCCATTCCAAGCCACCAATTCATTGAACG_-_ATGAATTCAATCCGTTCCACCACCAATTCTCTTTCGCCACTGCCCATCTCTTCCTCTAGGCATCTCTCTCACCCTGCATTTCTTCCGAGAACCCTTACGATTATACGTTCATTTGGTGGTCAATTCAGGGAATTATCATTGTCATGTCTGAATAAAAAACAAGGGCAACGGGAAGTATACTCGACGATCCAAAATCATGGTATTAAAGGTGCAAGGGCAGCTGTGACGAGTGTAAGTACAGGGAACAAGTACTCTAAAATAGGGGCACAGTCGACTGGAAGCCTCTCTGCATCTGAGCTTCTCAATGGCGTCGAGGCTGCTGCAAAGAGAGGAGCCGAGGTTGTGATGGACGCTGTTAGTAAGCCTCGAAACATTGATTATAAGGGCACGGCTAATCTTGTCACAGACACTGATAGAAGTAGTGAGCTTGCTATTCAAGAAGTTGTCAGGGGGAAATTCAAGGATCATCTCATTCTTGGAGAAGAGGGTGGATTCACTGGAGATCCAACTTCTGAATATCTTTGGTGCATTGACCCCTTAGATGGAACAACAAACTTTGCACATGGCTATCCCAGCTTTGCTGTATCAGTTGGAGTGCTTTACAGAGGAAAGCCGGCAGCAGCTTCTGTGGTAGAATTTGCTGGCGGACCATTGTGTTGGGTAACTCGTACCTTCTCTGCATGTGCAGGGGGGGGAGCATTTTGCAATGGTCAACAGATTCATGTTAGTTCCACCAATGAGATTGAAAGGTCACTCCTAGTCACTGGATTTGGCTATGAACATGGCGAAGCTTGGGAAGAAAATATGTCTCTTTTTAAAGAATTCACTCACGTCAGCAGGGGAGTGAGAAGGTTGGGTGCAGCTGCTGTGGATATGTGCCATGTTGCTTTTGGCATTGTTGAAGCATACTGGGAGTATCGCCTCAAACCATGGGACATGGCTGCTGGAGCATTGATAGTTGAAGAAGCAGGTGGTATGGTAACATGCATGGATGGAAGTGACTTCTGTGTTTTTGATCGTTCCATCCTGGTGTCGAATGGCACATTACATGAAAAGCTGCTGGAAAGGATTGCACCACCAACAAAGAAGCTCCAACAGAATGGGCTGGACATTTCTCATTGGTTCAAGCCTCAAGATTATAAATCAGATGTTTAA___AAAATATTCGTATATATTAGGCAGAATAACAGAAAAGCAGCTGCCCCTCCCCTCTCTACCTCACAGAGCAATGAATGTTATAATATTTAGTCGATTTCCTCTTAATTCGTCTCTACTGTGTACGAATTCACTACTCTCTGCATTTAGAAGCCCTGGCTTGTGCTCAATTATCTTTACCCCATCATTTAATGACTCAATTCCACATCTTGATATTGGAATGAAATTTATATTCTACCTCTTTACATTTTTTCCAAAAACTTATTTAAAAACTATATATGTTCTTGGAAACAATAAAAGGTGTTATTTTCTCCAATAAACAGTCGATAAAAGAAATGTGAAAAAAAGAAATCTTGGGCAGTGCTCTTCCCAGGTAACATTTAAAAAAATAATAAATAGGGAAATGAAATGGAAAGACCAAACATTTGAGGTGATTGTAAGCTGATTTATAATATTGAATCAGTACATATGGAGGATTACGTTTGACTCTTGATGAATTTGAACGAACTTAATTATCTGGTTAAGTGCACAGTATGCATCGCACTAGTGGAGACCATTCTTACAT

Fln Alignment:

Contig5782___MDAVSKPRNIDYKGTANLVTDTDRSSELAIQEVVRGKFKDHLILGEEGGFTGDPTSEYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGKPAAASVVEFAGGPLCWVTRTFSACAGGGAFCNGQQIHVSSTNEIERSLLVTGFGYEHGEAWEENMSLFKEFTHVSRGVRRLGAAAVDMCHVAFGIVEAYWEYRLKPWDMAAGALIVEEAGGMVTCMDGSDFCVFDRSILVSNGTLHEKLLERIAPPTKKLQQNGLDISHWFKPQDYKSDV
A9NKB8______________MDAVHKPRNIDYKGTANLVTDTDRRSELAIQEVVREKFKDHLILGEEGGFTGDPTSEYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGKPAAASVVEFAGGPLCWVTRTFSACAGGGAFCNGQQIHVSSTNEIERSLLVTGFGYEHDEAWAENITLFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGALIVEEAGGMVTCMDGSDFCVFDRSILVSNGTLHEKLLERIAPPTKKLQQNGMDISHWFKPEDYKSDV

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
443	50	50			1.0
444	50		50		1.0
652		66		33	1.0
928	87		12		0.992554
972	10	90			0.90298
974			10	90	0.90298
975			10	90	0.90298
1172	80		20		0.995493
1405	10	90			0.90298
1406	90	10			0.90298
1488	33			66	0.997452
1678	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain