SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5780

Length: 2249 nt

UniGene Fasta

>sp_v3.0_unigene5780
TGTCTTGACCTTGGCTGTCACTCAGTGATAATAATTGATCATCGAAATCATATACTACCGGTGCTATAATGACCATCAATATGGCGTTAAGTCCTCATTGACTCGGCGATAATCCACCCTTCGGTCTCAAGCAAATGGCCAACCACTACTACCACATAGGCATGATATGCCAGATTTGAGATTAAACAAGTGCCCAATTTCCGCTGCGAAATATTCTGTTCAATCGACAACAGTATAGTAAGAAATGACGACTCTACAGTGCATGGCTTATGACTTAGACTCCTGAGAACGCGCCCTATGGTGTTTTCGCAGAAGACCGTTTCTAAATTCTTAGCGAAGCTCCCTTGTCAAATATCTAGGATGAATTCCAACGAAGCCTCAGATATATAAAGCATTTTGTGGGTATTTTAGCTGTAGTTCCAATTCCTGTTAAGAAAAATGTACACACCAGAAAGATCTCCTTCCAGTTACGGGATTAACAAGAGCATTTCTGACACCAATACTGAGGCCTCTGACTTTTCACATGTATCCGCATCCCGAGATCAGGTTGATGGGACGGTGAGGAAAAAGCCCGGCAGGTTATCGTCTGCAGCCAGAGGATTTGTGGGTGCCTGTGGAACATGTATTGCTCCGTCTATCAAGGAAGAAGAAGATGATTATCAATACAAGGAGATATCAATGACTTCAACAGCCACAGATCGAAGCAGAGCCCTGAGTGTGGCCTCACGCAAGAGTAACGTCTATGGTAATACCTTTAACGCAAATAGTAAACCTGGAACAATGACCTTTACCATGTCCGGGCTCAGCAAAGCCACAGGAAACTTCAGTCCTTCTAACAAGATTGGACAAGGAGGTTTTGGGACAGTTTATAAAGGGAAACTCAAGGATGGAACCCTGGTTGCAATTAAGCGTGCAAAAAAGAATATCTATGACAAACATCTTTCTGTGGAATTCCAAAGTGAGATCCGAACATTGTCAAGTGTGGAACACCTCAATCTGGTCAGATTCCTTGGCTACTTGGAAGATGAACAGGAACGGATACTTGTTGTCGAGTATGTGCCAAATGGAACTCTTCGGGAGCATTTGGACTGTGTACACGGGATTGTATTGGACTTAGCTACAAGACTGGATATTGCCATCGATGTTGCCCATGCAGTGACTTATCTTCACATGTATACAGATCGGCCAATCATCCACAGAGATATTAAATCCTCCAACATTTTACTCACTGAAAATTTCAGGGCCAAAGTAGCGGACTTTGGTTTTTCCAGGCTTGCTCCAGAAGATATTGGCGCAACTCATATTTCTACACAAGTCAAAGGAACAGCAGGTTATTTAGATCCGGAGTATCTAAAAACCTACCAACTTACAACCAAAAGTGATGTCTATTCATTTGGTGTCTTGCTGGTTGAGATGATAACTGGAAGGCGGCCAATAGAGCATAGAAGGGAGCTCAGAGAGCGGATCACTGTAAGATGGGCTCTGAAGAAATTCCTGGAAGGAGACGCGATTTTGGCGTTGGATCCAAAGGTCACAAGAAGTGCAGCAGCAAGCCTAGCGGTGGAGAAAGTTCTGGAACTGGCGTTTCAGTGCACTGGTCCTTCCAGACAAGACAGACCGAGCATGAGGAAAACTGCCGAAATGCTGTGGAATATCCGCAAGGATTACCGCGAGCTGTTTGCATCAAAGGCCGATGCGCTTTCAACCTCCGTACCTCCTTCGGAGGTAGCCATAGAGGAAGAAACAGTTGATATGGAAGAGGTTATTCATAAAATCGAAGCTCTTCGTTTCTGAACAGAAGAAAAGGCAAAAGTAAAGGTGGATGCCTGCGTTGAAAATCTGAACGGGAAACGTAGTCCGATTAGCATGACCTGTACCCAGAGTGTTGCGTTGTAACTTGTGGTTGGATATGTATTTTGCTATTTTTTGAGTCACAGATGCGAACCTAGTCCGCCGAGCTCATAGTCTGTATTTGTCATTTAGGAAGATTTGCAATGGAGTTATGTAATTAATAGCAATGAATTGTTTGATTGACTCCTGTACACTCTGCAAGATGTAGCTTTGGTTTTTCAGGAATTGGTTTTCACCCAAATATATGAAGGGATGTCTTTTGCCCCTGCAAGAGCTTTATTTAGGATCTCTGTATCTGGCGAAACAAAGTTATAAAGATGGCTTTGCCTTTTCGGGACTTGTATTTATATTTATGTTACTAATTCAATCGCTTTATATCCTTGAACAATGCCATCGAT

Ace file of the UniGene sp_v3.0_unigene5780

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calmodulin-binding receptor-like cytoplasmic kinase 2 [Arabidopsis thaliana] sp\|Q8VZJ9.1\|Y4330_ARATH RecName: Full=Probable leucine-rich repeat receptor-like protein kinase At4g00330 gb\|AAL36420.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91688.1\| unk	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Receptor protein kinase-like	-	-	1.032e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	6.832e-15	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	2.08e-15	-

Source	Gene names
Sma3	57h21.32; AT1G66150; AT1G67720; AT1G79620; AT4g00330; AT5G49760; AT5G49770; A_IG005I10.8; At1g66150; At1g66880; At1g69730; At1g79620; At1g79620/F20B17_5; At2g11520; At3g46290; At4g00330; At5g49760; At5g49760/K2I5_13; At5g49780; At5g59700; B1148D12.10; CR4

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Wall-associated kinase	IPR013695	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G00330.1	CRCK2 calmodulin-binding receptor-like cytoplasmic kinase 2 chr4:142787-144427 REVERSE LENGTH=411	56%
RefSeq	Arabidopsis thaliana	NP_567170.2	calmodulin-binding receptor-like cytoplasmic kinase 2 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002320146.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ93

Fln msg: your sequence is longer than subject: 452 - 350

Fln protein: MYTPERSPSSYGINKSISDTNTEASDFSHVSASRDQVDGTVRKKPGRLSSAARGFVGACGTCIAPSIKEEEDDYQYKEISMTSTATDRSRALSVASRKSNVYGNTFNANSKPGTMTFTMSGLSKATGNFSPSNKIGQGGFGTVYKGKLKDGTLVAIKRAKKNIYDKHLSVEFQSEIRTLSSVEHLNLVRFLGYLEDEQERILVVEYVPNGTLREHLDCVHGIVLDLATRLDIAIDVAHAVTYLHMYTDRPIIHRDIKSSNILLTENFRAKVADFGFSRLAPEDIGATHISTQVKGTAGYLDPEYLKTYQLTTKSDVYSFGVLLVEMITGRRPIEHRRELRERITVRWALKKFLEGDAILALDPKVTRSAAASLAVEKVLELAFQCTGPSRQDRPSMRKTAEMLWNIRKDYRELFASKADALSTSVPPSEVAIEEETVDMEEVIHKIEALRF*

Protein Length: 453

Fln nts: TGTCTTGACCTTGGCTGTCACTCAGTGATAATAATTGATCATCGAAATCATATACTACCGGTGCTATAATGACCATCAATATGGCGTTAAGTCCTCATTGACTCGGCGATAATCCACCCTTCGGTCTCAAGCAAATGGCCAACCACTACTACCACATAGGCATGATATGCCAGATTTGAGATTAAACAAGTGCCCAATTTCCGCTGCGAAATATTCTGTTCAATCGACAACAGTATAGTAAGAAATGACGACTCTACAGTGCATGGCTTATGACTTAGACTCCTGAGAACGCGCCCTATGGTGTTTTCGCAGAAGACCGTTTCTAAATTCTTAGCGAAGCTCCCTTGTCAAATATCTAGGATGAATTCCAACGAAGCCTCAGATATATAAAGCATTTTGTGGGTATTTTAGCTGTAGTTCCAATTCCTGTTAAGAAAA_-_ATGTACACACCAGAAAGATCTCCTTCCAGTTACGGGATTAACAAGAGCATTTCTGACACCAATACTGAGGCCTCTGACTTTTCACATGTATCCGCATCCCGAGATCAGGTTGATGGGACGGTGAGGAAAAAGCCCGGCAGGTTATCGTCTGCAGCCAGAGGATTTGTGGGTGCCTGTGGAACATGTATTGCTCCGTCTATCAAGGAAGAAGAAGATGATTATCAATACAAGGAGATATCAATGACTTCAACAGCCACAGATCGAAGCAGAGCCCTGAGTGTGGCCTCACGCAAGAGTAACGTCTATGGTAATACCTTTAACGCAAATAGTAAACCTGGAACAATGACCTTTACCATGTCCGGGCTCAGCAAAGCCACAGGAAACTTCAGTCCTTCTAACAAGATTGGACAAGGAGGTTTTGGGACAGTTTATAAAGGGAAACTCAAGGATGGAACCCTGGTTGCAATTAAGCGTGCAAAAAAGAATATCTATGACAAACATCTTTCTGTGGAATTCCAAAGTGAGATCCGAACATTGTCAAGTGTGGAACACCTCAATCTGGTCAGATTCCTTGGCTACTTGGAAGATGAACAGGAACGGATACTTGTTGTCGAGTATGTGCCAAATGGAACTCTTCGGGAGCATTTGGACTGTGTACACGGGATTGTATTGGACTTAGCTACAAGACTGGATATTGCCATCGATGTTGCCCATGCAGTGACTTATCTTCACATGTATACAGATCGGCCAATCATCCACAGAGATATTAAATCCTCCAACATTTTACTCACTGAAAATTTCAGGGCCAAAGTAGCGGACTTTGGTTTTTCCAGGCTTGCTCCAGAAGATATTGGCGCAACTCATATTTCTACACAAGTCAAAGGAACAGCAGGTTATTTAGATCCGGAGTATCTAAAAACCTACCAACTTACAACCAAAAGTGATGTCTATTCATTTGGTGTCTTGCTGGTTGAGATGATAACTGGAAGGCGGCCAATAGAGCATAGAAGGGAGCTCAGAGAGCGGATCACTGTAAGATGGGCTCTGAAGAAATTCCTGGAAGGAGACGCGATTTTGGCGTTGGATCCAAAGGTCACAAGAAGTGCAGCAGCAAGCCTAGCGGTGGAGAAAGTTCTGGAACTGGCGTTTCAGTGCACTGGTCCTTCCAGACAAGACAGACCGAGCATGAGGAAAACTGCCGAAATGCTGTGGAATATCCGCAAGGATTACCGCGAGCTGTTTGCATCAAAGGCCGATGCGCTTTCAACCTCCGTACCTCCTTCGGAGGTAGCCATAGAGGAAGAAACAGTTGATATGGAAGAGGTTATTCATAAAATCGAAGCTCTTCGTTTCTGA___ACAGAAGAAAAGGCAAAAGTAAAGGTGGATGCCTGCGTTGAAAATCTGAACGGGAAACGTAGTCCGATTAGCATGACCTGTACCCAGAGTGTTGCGTTGTAACTTGTGGTTGGATATGTATTTTGCTATTTTTTGAGTCACAGATGCGAACCTAGTCCGCCGAGCTCATAGTCTGTATTTGTCATTTAGGAAGATTTGCAATGGAGTTATGTAATTAATAGCAATGAATTGTTTGATTGACTCCTGTACACTCTGCAAGATGTAGCTTTGGTTTTTCAGGAATTGGTTTTCACCCAAATATATGAAGGGATGTCTTTTGCCCCTGCAAGAGCTTTATTTAGGATCTCTGTATCTGGCGAAACAAAGTTATAAAGATGGCTTTGCCTTTTCGGGACTTGTATTTATATTTATGTTACTAATTCAATCGCTTTATATCCTTGAACAATGCCATCGAT

Fln Alignment:

Contig5780___FTMSGLSKATGNFSPSNKIGQGGFGTVYKGKLKDGTLVAIKRAKKNIYDKHLSVEFQSEIRTLSSVEHLNLVRFLGYLEDEQERILVVEYVPNGTLREHLDCVHGI--VLDLATRLDIAIDVAHAVTYLHMYTDRPIIHRDIKSSNILLTENFRAKVADFGFSRLAPEDIGATHISTQVKGTAGYLDPEYLKTYQLTTKSDVYSFGVLLVEMITGRRPIEHRRELRERITVRWALKKFLEGDAILALDPKVTRSAAASLAVEKVLELAFQCTGPSRQDRPSMRKTAEMLWNIRKD
B8LQ93______________FSLKELHSATNNFNYDNKLGEGAFGSVYWGQLWDGSQIAVKRLK--VWSTKAEMEFAVEVEILGRVRHKNLLSLRGYCSEGQERLIVYDYMPNLSILSHLHGQHAAECLLDWSRRMNIAIGSAEGLAYLHHHATPHIIHRDIKASNVLLDSDFKAQVADFGFAKLIPE--GETHVTTGVKGTVGYLAPEYAMWRKASENCDVYSFGILLLELVSGKKPVDKMDSNTKHTIVDWALPLVLEGKYDQLADPKF-HGKYNEEELKRVVHVAIMCAQNAPEKRPTMLEVVDFLTGESKE

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
745	33			66	0.997452
746			66	33	0.997452
788	25			75	0.996473
789	25			75	0.996473
791	75		25		0.996473
792		75		25	0.996473
934		70		30	1.0
1141		50		50	1.0
1249	85			14	0.993533
1406		77		22	0.999999
1745	87		12		0.992554
1755		12		87	0.992554
1813	30		69		1.0
1875			85	14	0.999981
2063	41		8	50	1.0
2071		14		85	0.993533
2072		85		14	0.993533
2113	20			80	0.995493
2134	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain