SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5733

Length: 2827 nt

UniGene Fasta

>sp_v3.0_unigene5733
CGTCGTGACCTTGGCTGTCAAGCAAAGTGACAATAACTGTCACCTCTTTTTCCTGTGTAGGGAAATTTCAGAGACAGCGGAAGAGGATGCATTAAACAAAACCCTCGGCAGTACAGCGACCAAACTTCTCTTTCGTTTCCTAGCGGGATTCCCACGCATCCTTAAACTATTCCCATTTCCAATTCCCCAGCTTCCCCTTTAATTTCCGGGGCGGGCGTCTTCTCCACCACCATGTTCTGAGAGCCCTTTCTCCTCCATTTTAGCTGTTCATAATTTTTTTTGAACCTCAATGGCTTCCGCGGACGATTTCAAAGCGATTGCGGGTGCCAAAGTTTTGATGGTCGGTGCCGGCGGCATTGGATGCGAGCTTCTCAAAACCCTCGCACTTACGGGCTTCAAAGATGTCCACGTTATTGACATGGATACAATTGAAGTTAGCAATTTAAACAGGCAATTTCTATTTCGTAAATGCCACGTTGGGCAATCAAAAGCTAGTGTGGCACGGGAGGCTGTCTTAAAATTCAGACCTGATATGAAGATCGCTGCACACCATGCCAATGTCAAGGATCCGGAGTTTGGTGTAGATTTTTTTAAGCAGTTTAATGTTGTATTAAATGGGTTGGACAATCTGGATGCTCGCAGACATGTGAACAGGCTTTGCTTGGCTGCAGGAGTTCCTCTGGTAGAAAGTGGAACTACTGGGTATTTAGGACAGGTAACTGTGCATGTTAAGGGTGAGACAGAGTGTTACGAGTGCCAACCAAAGCCAGCACCAAAAACATATCCAGTTTGTACAATCACAAGTACTCCATCAAAGTTTGTACATTGCATTGTCTGGGCAAAAGAACTACTTTTTGCAAAGTTGTTTGGGGATAGGAGCCAGGCAAATGATCTTAATGTACAGTCTAATGACGCGGGAGGATCCACGAAGGATGATGCTGATGCGTTTGACATTCATGAGGATGAAAGTTATGAAGACTATGGCAGGCGAATATTTGACCATGTTTTTGGATATAATATAGAGACGGCTCTGAGAAATCCAGAAACATGGAAGAAGAGGATAGCACCAACTCCTAAATACATTAAAGATATTCTTCCACTGAAGGAGAATGAAGAGAACGGAATATCTAATAATTCAAGTATAGAGGAAAGGGAACAGTCCTTATCTGCAATGTCTTCCCTGGGACTGAAAAACCCACAGGACATCTGGAATATTGTTGATAATGCAAGAATTTTCTTAAAGACCTTGCAGATTTTTTTTGAAAGAAGAAAACAGGAGATGGGGAGTTTGACATTTGACAAAGATGACCAGTTAGCAGTTGAATTTGTTACTGCAGCTGCTAATATTCGAGCTTCTTCTTTTGGCATCCAAATGCAAAGCTTGTTTGAAGCGAAAGGCATTGCAGGCAATATTGTTCATGCAATAGCAACAACAAATGCAATCATTGCAGGTCTAATTGTACTTGAAACAACTAAGTTGCTCAGAAATGATTCAAAGAACTATAGAATGACATACTGCTTACAACATCCATCAAGGAAGATGCTTCTGATGCCAGTAGAGCCATTTGAACCCAACAGAACTTGTTATGTATGCTCAAGGACACCTGTATCACTAGAGGTGAATACTCAGCAAGCAAAACTGAAGGATATTATAGAAAAAGCTGTCAAGGCTAAATTGGGTGTCAATTCCCCATTGATCATGCATGGTTCTACACTTTTGTTTGAGTCTGGTGATGACATTGAGGAAGATGTTGCTGCACATTATGCACAAAACTTAGAGAAGACGTTAGCAGAATTTCCAGTTCCAATCACAAATGGTGTTATTCTTACGGTAGAGGACTACCAGCAAGAGTTCTTATGCAGTATTAATATTAAGCACAGAGATGACTTTGATGAGGAGTCAGGTGGCATTGTACTGTCTGGAGGGGTTCCGTCGATGGCAAGTGGAAGTGATGATCATGCTGATGAAAGTGGAGAAAAGCTACCAATTGCAACTACAGAAGCTGGAGATGGTTCTGATGATGTTGAATTAATCACAGCTGACTCTCTAGTCACTTCTGGAACTAAGAGAAAATCGGGCGTTGATATAGCATTTACTGATGACAACTCAGGTAACAAAAAGCAGATCACGGTCCTCACAACTAACACAGTTGCTGTTGCAGGAGGTAAGAGAAAGTTGGATGACGATGACAATGATGTGATTCTAATTGATGAGGATCCTGGTAATAGGAAGAAGATAAGATTGGAGTAAGACTTCTGTCATGCAGCATGCTTCATAACCTGTAGAAAAATCAGATTTTGCTGGTAATCTAACTTAGAGTTTATTTTTGTTTCTGATCCCCATGTAAAATGTATTCATTTTGCTGCTTAAAGAGGTCCTCATTTTAGGCTTGCATTTTGGCATGATGTGAATAATACAAAATTAATGGTTTTGTTATTCATCCTTGTAAACGATCACCTTTACATGGGAAGGAAGCCTTGTCCATTGAATCAGCATAGATGCCCAATTCACATCTGAGTTGGTTGTTGACTCCAAAATTTTTCACATTGGGTCATGCGATTGGTTTCTCATAGTGCAAAAGTCTATTGAGCACCCATAAAATGACTAACAAGGGTAGTCACACTCATCATAGTTTTTTTGCGTTCTGTGGAGAATATGGTATGTACTGGTTTATAAGTTGAGCGAAATACAGCCATGGTTGTGTGTGTGCTCTACGACGTCAGTTGCATACTTGGGCTTGCATGATGGTGATTGAGAAATCAGTATGGTACGTTCTGTTTTTAACGACATCCTTTCTATGGTAATTCTCATTTTATCTGGCTTCGA

Ace file of the UniGene sp_v3.0_unigene5733

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-activating enzyme E1b, putative n=1 Tax=Ricinus communis RepID=B9RH95_RICCO	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	SUMO1 activating enzyme subunit 2	-	-	7.067e-09	-

Source	Gene names
Sma3	At2g21470; GSVIVT00036327001; MICPUCDRAFT_3065; MICPUCDRAFT_36729; MICPUN_52640; MICPUN_63834; OSTLU_1406; OSTLU_30829; Os01g0271500; Os07g0586500; OsI_01345; OsI_26664; OsJ_01249; OsJ_24922; Ot04g02720; P0693B08.15; PHATRDRAFT_54460; PHYPADRAFT_142864; P

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	small protein activating enzyme activity	GO:0008641	Molecular Function	-
Sma3	acid-amino acid ligase activity	GO:0016881	Molecular Function	-
Sma3	SUMO activating enzyme activity	GO:0019948	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	protein sumoylation	GO:0016925	Biological Process	-
Sma3	protein neddylation	GO:0045116	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin/SUMO-activating enzyme E1	IPR000011	-	-
Sma3	Ubiquitin-activating enzyme repeat	IPR000127	-	-
Sma3	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	MoeZ/MoeB	IPR007901	-	-
Sma3	E2 binding	IPR014929	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Ubiquitin-activating enzyme, E1, active site	IPR018074	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G21470.2	SAE2, ATSAE2, EMB2764 SUMO-activating enzyme 2 chr2:9198752-9202136 FORWARD LENGTH=700	69%
RefSeq	Arabidopsis thaliana	NP_179742.2	SUMO-activating enzyme subunit 2 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002306122.1	predicted protein, partial [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACF3

Fln msg: your sequence is longer than subject: 654 - 113

Fln protein: MASADDFKAIAGAKVLMVGAGGIGCELLKTLALTGFKDVHVIDMDTIEVSNLNRQFLFRKCHVGQSKASVAREAVLKFRPDMKIAAHHANVKDPEFGVDFFKQFNVVLNGLDNLDARRHVNRLCLAAGVPLVESGTTGYLGQVTVHVKGETECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKELLFAKLFGDRSQANDLNVQSNDAGGSTKDDADAFDIHEDESYEDYGRRIFDHVFGYNIETALRNPETWKKRIAPTPKYIKDILPLKENEENGISNNSSIEEREQSLSAMSSLGLKNPQDIWNIVDNARIFLKTLQIFFERRKQEMGSLTFDKDDQLAVEFVTAAANIRASSFGIQMQSLFEAKGIAGNIVHAIATTNAIIAGLIVLETTKLLRNDSKNYRMTYCLQHPSRKMLLMPVEPFEPNRTCYVCSRTPVSLEVNTQQAKLKDIIEKAVKAKLGVNSPLIMHGSTLLFESGDDIEEDVAAHYAQNLEKTLAEFPVPITNGVILTVEDYQQEFLCSINIKHRDDFDEESGGIVLSGGVPSMASGSDDHADESGEKLPIATTEAGDGSDDVELITADSLVTSGTKRKSGVDIAFTDDNSGNKKQITVLTTNTVAVAGGKRKLDDDDNDVILIDEDPGNRKKIRLE*

Protein Length: 655

Fln nts: CGTCGTGACCTTGGCTGTCAAGCAAAGTGACAATAACTGTCACCTCTTTTTCCTGTGTAGGGAAATTTCAGAGACAGCGGAAGAGGATGCATTAAACAAAACCCTCGGCAGTACAGCGACCAAACTTCTCTTTCGTTTCCTAGCGGGATTCCCACGCATCCTTAAACTATTCCCATTTCCAATTCCCCAGCTTCCCCTTTAATTTCCGGGGCGGGCGTCTTCTCCACCACCATGTTCTGAGAGCCCTTTCTCCTCCATTTTAGCTGTTCATAATTTTTTTTGAACCTCA_-_ATGGCTTCCGCGGACGATTTCAAAGCGATTGCGGGTGCCAAAGTTTTGATGGTCGGTGCCGGCGGCATTGGATGCGAGCTTCTCAAAACCCTCGCACTTACGGGCTTCAAAGATGTCCACGTTATTGACATGGATACAATTGAAGTTAGCAATTTAAACAGGCAATTTCTATTTCGTAAATGCCACGTTGGGCAATCAAAAGCTAGTGTGGCACGGGAGGCTGTCTTAAAATTCAGACCTGATATGAAGATCGCTGCACACCATGCCAATGTCAAGGATCCGGAGTTTGGTGTAGATTTTTTTAAGCAGTTTAATGTTGTATTAAATGGGTTGGACAATCTGGATGCTCGCAGACATGTGAACAGGCTTTGCTTGGCTGCAGGAGTTCCTCTGGTAGAAAGTGGAACTACTGGGTATTTAGGACAGGTAACTGTGCATGTTAAGGGTGAGACAGAGTGTTACGAGTGCCAACCAAAGCCAGCACCAAAAACATATCCAGTTTGTACAATCACAAGTACTCCATCAAAGTTTGTACATTGCATTGTCTGGGCAAAAGAACTACTTTTTGCAAAGTTGTTTGGGGATAGGAGCCAGGCAAATGATCTTAATGTACAGTCTAATGACGCGGGAGGATCCACGAAGGATGATGCTGATGCGTTTGACATTCATGAGGATGAAAGTTATGAAGACTATGGCAGGCGAATATTTGACCATGTTTTTGGATATAATATAGAGACGGCTCTGAGAAATCCAGAAACATGGAAGAAGAGGATAGCACCAACTCCTAAATACATTAAAGATATTCTTCCACTGAAGGAGAATGAAGAGAACGGAATATCTAATAATTCAAGTATAGAGGAAAGGGAACAGTCCTTATCTGCAATGTCTTCCCTGGGACTGAAAAACCCACAGGACATCTGGAATATTGTTGATAATGCAAGAATTTTCTTAAAGACCTTGCAGATTTTTTTTGAAAGAAGAAAACAGGAGATGGGGAGTTTGACATTTGACAAAGATGACCAGTTAGCAGTTGAATTTGTTACTGCAGCTGCTAATATTCGAGCTTCTTCTTTTGGCATCCAAATGCAAAGCTTGTTTGAAGCGAAAGGCATTGCAGGCAATATTGTTCATGCAATAGCAACAACAAATGCAATCATTGCAGGTCTAATTGTACTTGAAACAACTAAGTTGCTCAGAAATGATTCAAAGAACTATAGAATGACATACTGCTTACAACATCCATCAAGGAAGATGCTTCTGATGCCAGTAGAGCCATTTGAACCCAACAGAACTTGTTATGTATGCTCAAGGACACCTGTATCACTAGAGGTGAATACTCAGCAAGCAAAACTGAAGGATATTATAGAAAAAGCTGTCAAGGCTAAATTGGGTGTCAATTCCCCATTGATCATGCATGGTTCTACACTTTTGTTTGAGTCTGGTGATGACATTGAGGAAGATGTTGCTGCACATTATGCACAAAACTTAGAGAAGACGTTAGCAGAATTTCCAGTTCCAATCACAAATGGTGTTATTCTTACGGTAGAGGACTACCAGCAAGAGTTCTTATGCAGTATTAATATTAAGCACAGAGATGACTTTGATGAGGAGTCAGGTGGCATTGTACTGTCTGGAGGGGTTCCGTCGATGGCAAGTGGAAGTGATGATCATGCTGATGAAAGTGGAGAAAAGCTACCAATTGCAACTACAGAAGCTGGAGATGGTTCTGATGATGTTGAATTAATCACAGCTGACTCTCTAGTCACTTCTGGAACTAAGAGAAAATCGGGCGTTGATATAGCATTTACTGATGACAACTCAGGTAACAAAAAGCAGATCACGGTCCTCACAACTAACACAGTTGCTGTTGCAGGAGGTAAGAGAAAGTTGGATGACGATGACAATGATGTGATTCTAATTGATGAGGATCCTGGTAATAGGAAGAAGATAAGATTGGAGTAA___GACTTCTGTCATGCAGCATGCTTCATAACCTGTAGAAAAATCAGATTTTGCTGGTAATCTAACTTAGAGTTTATTTTTGTTTCTGATCCCCATGTAAAATGTATTCATTTTGCTGCTTAAAGAGGTCCTCATTTTAGGCTTGCATTTTGGCATGATGTGAATAATACAAAATTAATGGTTTTGTTATTCATCCTTGTAAACGATCACCTTTACATGGGAAGGAAGCCTTGTCCATTGAATCAGCATAGATGCCCAATTCACATCTGAGTTGGTTGTTGACTCCAAAATTTTTCACATTGGGTCATGCGATTGGTTTCTCATAGTGCAAAAGTCTATTGAGCACCCATAAAATGACTAACAAGGGTAGTCACACTCATCATAGTTTTTTTGCGTTCTGTGGAGAATATGGTATGTACTGGTTTATAAGTTGAGCGAAATACAGCCATGGTTGTGTGTGTGCTCTACGACGTCAGTTGCATACTTGGGCTTGCATGATGGTGATTGAGAAATCAGTATGGTACGTTCTGTTTTTAACGACATCCTTTCTATGGTAATTCTCATTTTATCTGGCTTCGA

Fln Alignment:

Contig5733___IVLSGGVPSMASGSDDHADESGEKLPIATTEAGDGSDDVELITADSLVTSGTKRKSGVDIAFTDDNSGNKKQITVLTTNTVAVAGGKRKXXXXXXXXXXXXXXPGNRKKIRLE
D5ACF3______________MVLSGEVPTMASGSDDHADESGEKLPITTIEAGDGSDDVELITADSLVTSGAKRKLGADMTFNDDNSDNNKKIAVLTTNTVAVAGGKRKLDDDDDDVILIDEDPGNRKKTRLE

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
1380	83	16			0.994512
1382	16		83		0.994512
1415	33	66			1.0
1551		83		16	0.994512
1838	83		16		0.994512
1886		80		20	0.995493
1887	80			20	0.995493
1934	16		83		0.994512
1940		50	50		1.0
1944	50		50		1.0
2048		20		80	0.995493
2258	62		37		1.0
2260	62	37			1.0
2273	83			16	0.994512
2274			83	16	0.994512
2278	20		80		0.995493
2280		16		83	0.994512
2282		83	16		0.994512
2414		10		90	0.90298
2415	10		90		0.90298
2417			88	11	0.923564
2488	14		85		0.993533
2503	16		83		0.994512
2662	80	20			1.0
2711			66	33	1.0
2778	83		16		0.994512
2779		83		16	0.994512
2780			80	20	0.995493
2781		20		80	0.995493
2782			20	80	0.995493
2784	25			75	0.996473
2787			33	66	0.997452
2788	33			66	0.997452
2789			33	66	0.997452
2791	66		33		0.997452
2794	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain