SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5665

Length: 1121 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5665

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	-	-	2.0e-06	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-
Sma3	GNAT domain	IPR000182	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G18335.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein chr1:6309428-6311326 REVERSE LENGTH=269	51%
RefSeq	Arabidopsis thaliana	NP_683313.2	acyl-CoA N-acyltransferases-like protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002318313.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRE4

Fln msg:

Fln protein: MGLHNVADNNTSVDSRKLSSKEKKLRRREELVKKKAVDEAIKSAYMKDDHLVDFPAFHTYDRNGLLVRLGSGSGEHLSSSLKRYIQELLKVNMQSAYGPEWAAEEKIKRREMVAPEARYIFVRSIQSADNEHLCNINNKEEVHECQWTGDGDPVVAFVHYRFIVEEEIPVVYVYELQLQKCVQGRGLGKFLMQLIELIARKNQMKAVMLTVQKRNISAMNFYTSKLRYIISSISPSRVDPLIGAEKSYEILCKTFDSEAKMKLEEDGRPGLHCLSLNPRSTFLQHVHIAYILKECTKE*

Protein Length: 300

Fln nts: ATGGGGGTGGATATAAGCTGCCTACCATTTCGGTTTTTTTGACAACGTTGGGTTACCTGACCTCCTCTGTCTGGTTACACGGCCATAGATTCTATTCAGAGCCCTTGATTCTGCTTTATGCTGTGACAATTCATTCTGGGTCTCCATGGAAGACATTGGGTAAGGTCCGACCAGTGAGCTGAGAGCGTTTAGGAGGAGAA_-_ATGGGTCTTCACAATGTTGCAGACAATAATACTTCTGTGGACTCCAGAAAATTGAGCAGCAAGGAGAAGAAGTTGAGACGCAGGGAGGAATTAGTGAAGAAAAAGGCTGTTGACGAGGCTATTAAATCTGCCTATATGAAAGATGATCATCTCGTTGACTTCCCTGCTTTTCATACATATGACCGAAATGGCCTATTAGTTCGTCTGGGATCAGGATCAGGAGAACATTTGTCCTCCTCACTAAAGCGTTACATCCAAGAGCTTTTGAAGGTGAATATGCAGAGTGCATATGGACCAGAATGGGCCGCGGAAGAGAAAATCAAACGCAGAGAAATGGTTGCTCCTGAAGCGCGGTATATTTTTGTGCGGAGTATTCAAAGTGCTGACAATGAACATCTTTGCAATATAAATAATAAGGAAGAGGTGCATGAGTGTCAGTGGACAGGTGATGGAGACCCTGTGGTTGCTTTTGTGCATTATCGATTCATTGTTGAGGAAGAAATTCCTGTAGTCTATGTTTATGAACTTCAGTTACAGAAATGTGTGCAAGGAAGAGGGCTTGGAAAATTTTTGATGCAGCTAATTGAACTTATCGCACGCAAGAACCAGATGAAGGCAGTGATGCTTACTGTTCAGAAAAGAAATATATCTGCAATGAATTTCTACACTAGCAAACTAAGATACATAATTTCCAGCATATCACCATCACGAGTAGATCCACTGATCGGAGCAGAGAAGAGTTACGAAATCCTCTGCAAAACATTTGATTCTGAAGCCAAGATGAAACTGGAGGAAGATGGCAGACCAGGTTTACATTGTCTAAGTTTGAATCCAAGATCCACATTTTTACAGCATGTTCATATAGCTTATATCCTTAAAGAATGTACCAAGGAGTGA___CTTAATAAGTGAACAAACTCAACC

Fln Alignment:

Contig5665___MGLHNVADNNTSVDXXXXXXXXXXXXXXXXXXXXXAVDEAIKSAYMKDDHLVDFPAFHTYDRNGLLVRXXXXXXXXXXXXXKRYIQELLKVNMQSAYGPEWAAEEKIKRREMVAPEARYIFVRSIQSADNEHLCNINNKEEVHECQWTGDGDPVVAFVHYRFXXXXXXXXXXXXXLQLQKCVQGRGLGKFLMQLIELIARKNQMKAVMLTVQKRNISAMNFYTSKLRYIISSISPSRVDPLIGAEKSYEILCKTFDSEAKMKLEEDGRPG
A9NRE4______________MGLHNVAENNASVDSRKLSSKEKKLRRREELVKKKAVDEAIKSAYMKDDHLVGFPAFHTYDRNGLLVRLESGSGEHLSSPLKRYIQELLKVNMQGAYGPEWAAEEKIKRREMVAPEARYIFVRSMQSADNGHLSNINNTEEAHECHWSGDGDPVVAFVHYRFIVEEEIPVVYVYELQLEQCVQGRGLGKFLMQLIELIARKNHMKAVMLTVQKRNISAMNFYTSKLRYIISSISPSRVDPLIGAEKSYEILCKTFDSEAKTKLEEDGSSG

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
766	11		88		0.923564
767	11	88			0.923564
791	87		12		0.992554
1005	66			33	0.997452
1007	66		33		0.997452
1009			66	33	0.997452
1010			66	33	0.997452
1011	33	66			0.997452
1013	33		66		0.997452
1015		66		33	0.997452
1016		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain