SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5649

Length: 2812 nt

UniGene Fasta

>sp_v3.0_unigene5649
ACCTCCTTCTTGGGCTCCAGATGCACTTGATGCTGCAGTACAGCTTGTGGAACTTCTGAGAGCTGCAGAAGACTATGCATCTACAATGCAACTTCCTAAAAATTGGCTGCATTTGCATTTTCTGCGTGCAATTGGTACAGCTCTGTCCATGCGGGTTGGCATTGCTGCTGATGCTGCAGCAGCCTTGCTCTTCCGTACACTTTCACAGCCTGCATTGCTTTTTCCTCCTCCTCGACTTGCTCAAGGTGTTGATGTTCAGTGTGACATGTATGGTGCCTTTGGTCCTTCAAGCAGTGGAGAGCAGATAGAAATGGAAACATATCAAGCTAATATCGAAGCCACAGCCCAAGGTGTGGCCTCATTAATGCGTCATCATGGGCCTGAGGTAGAATGGAGAATTTGTACTCTTTGGGAAGCTGCATATGGTCTGCTCCCTCTGAGTTCGTCAACCGTGGATTTACCTGAAATTGTAGTGGCAACTCCTTTGCAACCGCCAGTTTTATCATGGAATCTATTTCATCCTCTCCTCCGTGTTCTGGAATATCTACCTCGGGGAAGCCCATCAGAGGCTTCATTAATGAGAATATTTACTGCGACTGTCCAAGCAATACTGCAAAGAACCTTTCCTGCAGAACAATCAATGGAACAGACTAGAAAAACACGAAATTCCCATGCTGGTGCTGGTCCAACCTCCAAGAACCTTGCTGTGGCCGAGCTCCGTGCTATGGTTCATTCTTTATTTACAGAGTCTTGTCTTCCTTTAGATCTTGCTTCTCGTTTACTCTTTGTGGTCCTTACTGTTTGCCTTAGTCATGATGCTGTGCAAAATGGGAGCAGGAAAGCAATAAATGGTAGAGGTGTACTTTCAAATTCAACTATGAGAGACCAGCAGGCTATTAATGGAAGCCAAAAAGTAAATGGGCACAGAGCCAACAAAGAGAGAGGGGCAGCAGCAACTTTCAGTTCATACATTCTTGCAGCTGTTTGTGCTCAGGCATGTGAAGTGCAATTGCTCTCTTTTACATCACCTATGGTAAACTGTGTACACCCACCTCATTCTGTTCGATCGGCAAACAGCATCAGTGGACATGTCAAAGGACTACCAAATGGGGTCTATTCTGCTCTGAACCATACCAGAAGGTTATTAGGGATTTTAGAGGCACTTCTGTCATTAAATCCATCTGCTGTTGGCAATACTGCAGAAAATTACAGCTCTAGTGAGATAGTTGCTGCCGCTATGGTAGCTGCACATATATCAGATCTTTTAGGAAGGTCAAAGGCATGCATGCATGCACTGTCTGTCATGATGAGATGCAAATGGAATCCAGAGCTATGTGCCAGAGCCTCATCAGTTCTTGTTCTTATTGATGCTAATAGCAAAGCAGTTGCTTCCATTATAGACAAGTCCGAATCATTTGTTTCACATGTTCAGTATAGAGGAGAACAGAATTACAGTATGGATACAGCTGCTTATTCTGGAGTAGGAATACATGCAGAGGTGGCAATTGACCAAAACCCTGAAGGCGGCAATATTTTATCCTTTGAAAATTGCCATGGTCAGGTGGAGGTTAAGTCTCACAATGGACAAGAGCAACAATTTATGGATGTGGTTATTGTTGGTTCTGGAAAAGTTATTGCTAACCTACCAGTGGATGCATCAGATGTGGCCTCTCTCCTTACCGTGGACAGACATAAATGGGTAAATGATAATGTTGGAAATTTTGTCACAGCTGTGCTGGAAGAGAAACAAGATTTGTGTGTAGCTTCTGTACCGTTGCTCTGGCAGAGGCTGATTACAGCTCCTGAAATGCAAATGAGTGTTGAAAGTACATCTGCCAAACAAGGTTGGAGGCAGGTCGTTGATGCCCTTTGCAATATTGTACGGGCTTCTCCCGCGAAAGCCGCAACTGCTATTGTTGTTCAGGCAGAAAGAGATTTGCAGCCTTGGGTTACGAGAGATGATACCCAAGGTCAACAAATATGGAGACTAAATCAGCGGATCGTAAGCCTTCTTGCTGAACTTCTGAGGTATCATAATGCTCCAGAATCCTTGATGGTATTGGCTAATGCATCAGATCTTCTCATGAGAGCAACAGATGGCATGCTTGTTGATGGAGAAGCTTGTACAACACCACAATTAGAGTTGTTAGAAGCAATGGCAGTGGCAGCACAACTTTCACTAGGTTGGGGGGTACCAGGCAAGGCAATGACAGATGGACTATGGAACCTATTGAAGTATCGGCTACCTGCAACTGTTCAATGCCTATCACATTCCAGTGCGCATGTCCGTGCACTTAGTACATCAGTTCTGCGGGATATTTTGCATGCGGAATCTCTCAATTTCAGGTATTGCAAGAACATTTCAGAAAAAAAGCACCATTCTGAACATTTGTATTATGGAAAGGACATGGTTGTTCAGGATTGGCATAAAGCTGTAGAACAATGCCTGGCATGGGAAGCCCACAATCGGCAAGCAAGGGGGATGTCTGTTTCCTTTCTTGCATTAGCAGCCAATGCATTAGGTTTTTCAGCAAATGTTTGACACGGCATATTTTTCTCGTCATAGTGTATATCACCCCGGCACATGGAACTTGGCATTCCTGGGTTTCTCAGGAAATAGCTAATGTATTTCTAGAGTTTTGAGGATGAAAGAAATATTGTTTTTATACCGTAAGAAATGTAGTACTCCCACAGAACTGTTACGTTGCGGTGACATGGCTGAAAGGCAAGCTTGTACAATCTTTCTAATGATCGTATTTTTATTTTGACAATGGCTAACATTTCGTATGATACTAAAATTGCTATTTTTACT

Ace file of the UniGene sp_v3.0_unigene5649

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	gigantea-like protein [Hordeum vulgare] gb\|AAW66946.1\| gigantea-like protein [Hordeum vulgare subsp. vulgare]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Gigantea	-	-	1.445e-16	-

Source	Gene names
Sma3	GI; GSVIVT00008956001; GSVIVT00008957001; LATE1; LgGI H1; LpGI H1; Os01g0182600; OsI_00663; OsJ_00641; POPTRDRAFT_551288; POPTRDRAFT_818606; RCOM_0961910; TaGI1; TaGI2; TaGI3; VITISV_032939; gi; gi1; gi2; gigz1A; gigz1B;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleoplasm	GO:0005654	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	response to blue light	GO:0009637	Biological Process	-
Sma3	flower development	GO:0009908	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-
Sma3	response to far red light	GO:0010218	Biological Process	-
Sma3	temperature compensation of the circadian clock	GO:0010378	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	rhythmic process	GO:0048511	Biological Process	-
Sma3	positive regulation of long-day photoperiodism, flowering	GO:0048578	Biological Process	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22770.1	GI, FB gigantea protein (GI) chr1:8062398-8067447 FORWARD LENGTH=1173	54%
RefSeq	Arabidopsis thaliana	NP_564180.1	gigantea protein (GI) [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002307516.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQU1

Fln msg: your sequence is shorter than subject: 847 - 1179

Fln protein: PPSWAPDALDAAVQLVELLRAAEDYASTMQLPKNWLHLHFLRAIGTALSMRVGIAADAAAALLFRTLSQPALLFPPPRLAQGVDVQCDMYGAFGPSSSGEQIEMETYQANIEATAQGVASLMRHHGPEVEWRICTLWEAAYGLLPLSSSTVDLPEIVVATPLQPPVLSWNLFHPLLRVLEYLPRGSPSEASLMRIFTATVQAILQRTFPAEQSMEQTRKTRNSHAGAGPTSKNLAVAELRAMVHSLFTESCLPLDLASRLLFVVLTVCLSHDAVQNGSRKAINGRGVLSNSTMRDQQAINGSQKVNGHRANKERGAAATFSSYILAAVCAQACEVQLLSFTSPMVNCVHPPHSVRSANSISGHVKGLPNGVYSALNHTRRLLGILEALLSLNPSAVGNTAENYSSSEIVAAAMVAAHISDLLGRSKACMHALSVMMRCKWNPELCARASSVLVLIDANSKAVASIIDKSESFVSHVQYRGEQNYSMDTAAYSGVGIHAEVAIDQNPEGGNILSFENCHGQVEVKSHNGQEQQFMDVVIVGSGKVIANLPVDASDVASLLTVDRHKWVNDNVGNFVTAVLEEKQDLCVASVPLLWQRLITAPEMQMSVESTSAKQGWRQVVDALCNIVRASPAKAATAIVVQAERDLQPWVTRDDTQGQQIWRLNQRIVSLLAELLRYHNAPESLMVLANASDLLMRATDGMLVDGEACTTPQLELLEAMAVAAQLSLGWGVPGKAMTDGLWNLLKYRLPATVQCLSHSSAHVRALSTSVLRDILHAESLNFRYCKNISEKKHHSEHLYYGKDMVVQDWHKAVEQCLAWEAHNRQARGMSVSFLALAANALGFSANV*

Protein Length: 848

Fln nts: ACCTCCTTCTTGGGCTCCAGATGCACTTGATGCTGCAGTACAGCTTGTGGAACTTCTGAGAGCTGCAGAAGACTATGCATCTACAATGCAACTTCCTAAAAATTGGCTGCATTTGCATTTTCTGCGTGCAATTGGTACAGCTCTGTCCATGCGGGTTGGCATTGCTGCTGATGCTGCAGCAGCCTTGCTCTTCCGTACACTTTCACAGCCTGCATTGCTTTTTCCTCCTCCTCGACTTGCTCAAGGTGTTGATGTTCAGTGTGACATGTATGGTGCCTTTGGTCCTTCAAGCAGTGGAGAGCAGATAGAAATGGAAACATATCAAGCTAATATCGAAGCCACAGCCCAAGGTGTGGCCTCATTAATGCGTCATCATGGGCCTGAGGTAGAATGGAGAATTTGTACTCTTTGGGAAGCTGCATATGGTCTGCTCCCTCTGAGTTCGTCAACCGTGGATTTACCTGAAATTGTAGTGGCAACTCCTTTGCAACCGCCAGTTTTATCATGGAATCTATTTCATCCTCTCCTCCGTGTTCTGGAATATCTACCTCGGGGAAGCCCATCAGAGGCTTCATTAATGAGAATATTTACTGCGACTGTCCAAGCAATACTGCAAAGAACCTTTCCTGCAGAACAATCAATGGAACAGACTAGAAAAACACGAAATTCCCATGCTGGTGCTGGTCCAACCTCCAAGAACCTTGCTGTGGCCGAGCTCCGTGCTATGGTTCATTCTTTATTTACAGAGTCTTGTCTTCCTTTAGATCTTGCTTCTCGTTTACTCTTTGTGGTCCTTACTGTTTGCCTTAGTCATGATGCTGTGCAAAATGGGAGCAGGAAAGCAATAAATGGTAGAGGTGTACTTTCAAATTCAACTATGAGAGACCAGCAGGCTATTAATGGAAGCCAAAAAGTAAATGGGCACAGAGCCAACAAAGAGAGAGGGGCAGCAGCAACTTTCAGTTCATACATTCTTGCAGCTGTTTGTGCTCAGGCATGTGAAGTGCAATTGCTCTCTTTTACATCACCTATGGTAAACTGTGTACACCCACCTCATTCTGTTCGATCGGCAAACAGCATCAGTGGACATGTCAAAGGACTACCAAATGGGGTCTATTCTGCTCTGAACCATACCAGAAGGTTATTAGGGATTTTAGAGGCACTTCTGTCATTAAATCCATCTGCTGTTGGCAATACTGCAGAAAATTACAGCTCTAGTGAGATAGTTGCTGCCGCTATGGTAGCTGCACATATATCAGATCTTTTAGGAAGGTCAAAGGCATGCATGCATGCACTGTCTGTCATGATGAGATGCAAATGGAATCCAGAGCTATGTGCCAGAGCCTCATCAGTTCTTGTTCTTATTGATGCTAATAGCAAAGCAGTTGCTTCCATTATAGACAAGTCCGAATCATTTGTTTCACATGTTCAGTATAGAGGAGAACAGAATTACAGTATGGATACAGCTGCTTATTCTGGAGTAGGAATACATGCAGAGGTGGCAATTGACCAAAACCCTGAAGGCGGCAATATTTTATCCTTTGAAAATTGCCATGGTCAGGTGGAGGTTAAGTCTCACAATGGACAAGAGCAACAATTTATGGATGTGGTTATTGTTGGTTCTGGAAAAGTTATTGCTAACCTACCAGTGGATGCATCAGATGTGGCCTCTCTCCTTACCGTGGACAGACATAAATGGGTAAATGATAATGTTGGAAATTTTGTCACAGCTGTGCTGGAAGAGAAACAAGATTTGTGTGTAGCTTCTGTACCGTTGCTCTGGCAGAGGCTGATTACAGCTCCTGAAATGCAAATGAGTGTTGAAAGTACATCTGCCAAACAAGGTTGGAGGCAGGTCGTTGATGCCCTTTGCAATATTGTACGGGCTTCTCCCGCGAAAGCCGCAACTGCTATTGTTGTTCAGGCAGAAAGAGATTTGCAGCCTTGGGTTACGAGAGATGATACCCAAGGTCAACAAATATGGAGACTAAATCAGCGGATCGTAAGCCTTCTTGCTGAACTTCTGAGGTATCATAATGCTCCAGAATCCTTGATGGTATTGGCTAATGCATCAGATCTTCTCATGAGAGCAACAGATGGCATGCTTGTTGATGGAGAAGCTTGTACAACACCACAATTAGAGTTGTTAGAAGCAATGGCAGTGGCAGCACAACTTTCACTAGGTTGGGGGGTACCAGGCAAGGCAATGACAGATGGACTATGGAACCTATTGAAGTATCGGCTACCTGCAACTGTTCAATGCCTATCACATTCCAGTGCGCATGTCCGTGCACTTAGTACATCAGTTCTGCGGGATATTTTGCATGCGGAATCTCTCAATTTCAGGTATTGCAAGAACATTTCAGAAAAAAAGCACCATTCTGAACATTTGTATTATGGAAAGGACATGGTTGTTCAGGATTGGCATAAAGCTGTAGAACAATGCCTGGCATGGGAAGCCCACAATCGGCAAGCAAGGGGGATGTCTGTTTCCTTTCTTGCATTAGCAGCCAATGCATTAGGTTTTTCAGCAAATGTTTGA___CACGGCATATTTTTCTCGTCATAGTGTATATCACCCCGGCACATGGAACTTGGCATTCCTGGGTTTCTCAGGAAATAGCTAATGTATTTCTAGAGTTTTGAGGATGAAAGAAATATTGTTTTTATACCGTAAGAAATGTAGTACTCCCACAGAACTGTTACGTTGCGGTGACATGGCTGAAAGGCAAGCTTGTACAATCTTTCTAATGATCGTATTTTTATTTTGACAATGGCTAACATTTCGTATGATACTAAAATTGCTATTTTTACT

Fln Alignment:

Contig5649___PPSWAPDALDAAVQLVELLRAAEDYASTMQLPKNWLHLHFLRAIGTALSMRVGIXXXXXXXLLFRTLSQPALLFPPPRLAQGVDVQCDMYGAFGPSSSGEQIEMETYQANIEATAQGVASLMRHHGPEVEWRICTLWEAAYGLLPLSSSTVDLPEIVVATPLQPPVLSWNLFHPLLRVLEYLPRGSPSEASLMRIFTATVQAILQRTFPAEQSMEQTRKTRNSHAGAGPTSKNLAVAELRAMVHSLFTESCLPLDLASRLLFVVLTVCLSHDAVQNGSRKAINGRGVLSNSTMRDQQAINGSQKVNGHRANKERGAAATFSSYILAAVCAQACEVQLLSFTSPMVNCVHPPHSVRSANSISGHVKGLPNGVYSALNHTRRLLGILEALLSLNPSAVGNTAENYSSSEIVAAAMVAAHISDLLGRSKACMHALSVMMRCKWNPELCARASSVLVLIDANSKAVASIIDKSESFVSHVQYRGEQNYSMDTAAYSGVGIHAEVAIDQNPEGGNILSFENCHGQVEVKSHNGQEQQFMDVVIVGSGKVIANLPVDASDVASLLTVDRHKWVNDNVGNFVTAVLEEKQDLCVASVPLLWQRLITAPEMQMSVESTSAKQGWRQVVDALCNIVRASPAKAATAIVVQAERDLQPWVTRDDTQGQQIWRLNQRIVSLLAELLRYHNAPESLMVLANASDLLMRATDGMLVDGEACTTPQLELLEAMAVAAQLSLGWGVPGKAMTDGLWNLLKYRLPATVQCLSHSSAHVRALSTSVLRDILHAESLNFRYCKNISEKKHHSEHLYYGKDMVVQDWHKAVEQCLAWEAHNRQARGMSVSFLALAANALGFSANV
B8LQU1______________PPSWAPDALDAAVQLVELLRAAEDYASTMRLPKNWLHLHFLRAIGTALSMRVGIAADAAAALLFRTLSQPALLFPPPRLAQGVDVQCDVYGAFGPSSSGEEIEMETYQASIEATAQGVASLMCLHGPEVEWRICTLWEAAYGLLPLSSSTVDLPEIVVATPLQPPVLSWNLFHPLLRVLEYLPRGSPSEASLMRIFTATVQAILQRTFPAEQSTEQTRTTRNAHAGVGPTSKNLAVAELRTMVHSLFTESCVPIDLASRLLFMVITVCLSHDAVQKGSRKTTNDRGVLSNSSMRDQQAINGSQKVNGHRAKKERGAVATFGSYILAAVCAQACEVQLFSFTSPMVNCVQPPNPVRAAIRISGHVEGPPNGFYSAVNHTRRLLGILEALLSLKPSAAGCTPGNYSSSEIIAAAMVAAHVSDLLGRSKACMHALSVMMRCKWDSELCARASTVLALIDVNRKAVASIIDKSESSVSHVQYRAEKNYSTDRAAYSGVGIHTEVAIDQNHEGGNILSLENCHGQVEVKSHNGQENFFMDVVIAGSGKVIANLSMDGSDVVSLLTVDRHKWVNHNVGNFVTAVLEEKQDLCVASVPLLWQRLITAPEMQMSVESTSAKQGWRQVVDALCNIVLASPAKAATAIVVQAERDLQPWVARHDSQGQQIWRLNQRIVSLLAELLRYHNAPEALMVLANASDLLMRATDGMLVDGEACTTPQLELLEAMAVTAQLSLGWGIPGKAMAEGLWNLLKYRLPATVQCLSHSSAHVRALSTSVLRDILHAESLNFRYCKNFSEKNHHSEHLYYGKDIVVQDWNKAVEQCLAWEAHNRQARGMSIALLALAANALGFSANV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1579		75	25		0.996473
1799		88		11	0.923564
1800	88		11		0.923564
1802		88	11		0.923564
1842	87			12	0.992554
1843		87	12		0.992554
1844	87		12		0.992554
1845	87		12		0.992554
2091	87		12		0.992554
2148	12		87		0.992554
2220	83		16		0.994512
2353			33	66	0.997452
2768	25			75	0.996473
2770	75		25		0.996473
2771		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1280	1294	GCAT GCAT GCAT GCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain