SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5642

Length: 2023 nt

UniGene Fasta

>sp_v3.0_unigene5642
TGGGAAACCATGGGAAAAAGTTTTCTCCAAACTGGGTATTCGAGAAAGTAATTTATGGAATCACGAACAAAAGCAGAGGTATTTATGGAATGCAAAGCTTTTCCCTGTTGTGCCACAGGCTGAAGGCCTCAAACTAGCTATGTGGCTCATGGGATTTAACTTGGATCAGAATGAAGACATGTTACATTTATGGGAAAATTCTCAGAGGGTCAGCTTAGAAGAAATGCACCGTAGTATAGATTATCGACAGCTTTGTGCAGAATCTAGTAATCATCGGTCAAAGCTTGCAGCTGGGATTGCTAAAGCTTGCATTAGCTATGGGTTGCTTGGTCGCAATTTGTCCAGACTTTGTGCGGAGATTCTCGAGGGAGAGAAGAATGGAATTGATATTTGCAAAAGCTATCTTTCTCTGTGTCCCAATCCTCAGACTAGCAATTTGAGTTTACTGAATTTACCAAAGAGCAGAGCATATCAAGCCCAGGTTGACCTCCATAGAGCTTGCAAGCAAGAACAAAGTGCAAATGTAATGGAGGAAAGTGTATGGGCAGCAGTAGCTGCTGAAACTGCTGCAGCTGTAAGACAGGATCTTGAAGATCAGGCATCAAAGTGTCTTAATGGTGTAGCTACACAAATATGTGATGGATATGAACATCATCACATTGCTAATAGTCAACCACTCCAGCCAAAAAGAGCACATGTTGAATTACCAGTTCGCGTGGATTTTGTCGGTGGCTGGAGTGATACTCCACCATGGAGCCTGGAGAGAAGTGGGTGTGTTTTGAATATGGCAATACATTTGGAGGGAACTCTTCCAGTAGGGGCAGAAATAGTTGTGAGATCAATAGAGGGAATTTTAATACGTGATGATGCAGGAAATCAGGTGCATATTCAGGATTTCAGGTCCATTGCTCCTCCATTTCATGAGGATGATCAATTTCGCTTGGTCAAAGCTGCACTCACTGTGACTGGCATCATCAATCCATCTGACAAAATCATGTCATCAACAGGCCTTGAAATAAGCACATGGGCTAAGGTTCCACGTGGTAGCGGATTGGGGACATCAAGTATCTTGGCAGCTGCTGTTATAAAGGGACTGCAACATGTAATAGGTGGAGATGAGAGTAATGAAAATGTTGCAAGGCTTGTTTTGGTCTTAGAGCAGTTGATGGGCACAGGTGGAGGTTGGCAAGATCAGATTGGGGGTCTTTATCCTGGCATCAAATGTACAACTAGCTTACCTGGCAAACCATTACGGCTCAATATAGAAACTGTTTCAGTAAGTTCTCAATTAGTCTTGGAGCTAGAACAACGCATGCTGGTAGTCTTCACTGGGCAAGTCCGCCTTGCTCATGGAGTGCTGCAGAAAGTTGTAGTTCGATATCTCCAACGTGATGCCCTCTTGATAACAAGTATCAAGCGCCTAGCAAAGCTTGCCAAAATTGGACGGGAATGTTTGATGAGTGGCAATTTGGATGATTTGGGTAGAATCATGCTTGAAGCATGGAGGCTACATCAAGAGCTTGATCCTTATTGTAGTAATACATTTGTGGATAAGCTTTTTGAATATTCTGACCCCTTCTGTTGTGGTTATAAGCTTATTGGAGCAGGTGGAGGTGGTTTTGCATTACTACTAGCTAGAAATAGAGAAGCTGCAGATGATTTAAAAAACTTGTTGAAAGCGTCTGGGTTTCCTATAAAAATATACAGCTGGAGTATGTGCTCAGATAGGATTTCAGGTCTTTCTTAGAAGTTGCAAAGCATGTTTTCATTGTCATATATATTATCTATTATTCCTATGTTGGAGATATGAATGGTGCTTCAATTATTTTCTAGCCTTACTTCCTCTTATAATTCTTTGTGCACTAGGTTTTAAGCAATTCTTTTCTGGATTGTAATATATTTGCTACTATTACTAGTTTGGCATTCAAATCAACGACAATAACTTTTGGACAGGCACAACTGCATGAACATTTTAAGGTGGCATTAAGTATGACTTATTTGTTGGCTGTTTATAATAGCCTCG

Ace file of the UniGene sp_v3.0_unigene5642

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SBD4_RICCO	-	-	0.0	55%
FL-Next	sp=Bifunctional fucokinase/fucose pyrophosphorylase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%

Source	Gene names
Sma3	F6F3.3; GSVIVT00008652001; LOC_Os03g02410; OSJNBa0090O10.21; Os03g0115100; OsI_09725; OsJ_09163; PHYPADRAFT_171137; POPTRDRAFT_664148; POPTRDRAFT_755427; RCOM_0716030; VITISV_022079;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	-
Sma3	phosphorylation	GO:0016310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Galactokinase/homoserine kinase	IPR001174	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	L-fucokinase	IPR012887	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G01220.1	FKGP, AtFKGP L-fucokinase/GDP-L-fucose pyrophosphorylase chr1:91750-95552 FORWARD LENGTH=1055	59%
RefSeq	Arabidopsis thaliana	NP_563620.1	L-fucokinase/GDP-L-fucose pyrophosphorylase [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002320879.1	predicted protein, partial [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LNJ9

Fln msg: your sequence is shorter than subject: 582 - 1055

Fln protein: GKPWEKVFSKLGIRESNLWNHEQKQRYLWNAKLFPVVPQAEGLKLAMWLMGFNLDQNEDMLHLWENSQRVSLEEMHRSIDYRQLCAESSNHRSKLAAGIAKACISYGLLGRNLSRLCAEILEGEKNGIDICKSYLSLCPNPQTSNLSLLNLPKSRAYQAQVDLHRACKQEQSANVMEESVWAAVAAETAAAVRQDLEDQASKCLNGVATQICDGYEHHHIANSQPLQPKRAHVELPVRVDFVGGWSDTPPWSLERSGCVLNMAIHLEGTLPVGAEIVVRSIEGILIRDDAGNQVHIQDFRSIAPPFHEDDQFRLVKAALTVTGIINPSDKIMSSTGLEISTWAKVPRGSGLGTSSILAAAVIKGLQHVIGGDESNENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKCTTSLPGKPLRLNIETVSVSSQLVLELEQRMLVVFTGQVRLAHGVLQKVVVRYLQRDALLITSIKRLAKLAKIGRECLMSGNLDDLGRIMLEAWRLHQELDPYCSNTFVDKLFEYSDPFCCGYKLIGAGGGGFALLLARNREAADDLKNLLKASGFPIKIYSWSMCSDRISGLS*

Protein Length: 583

Fln nts: TGGGAAACCATGGGAAAAAGTTTTCTCCAAACTGGGTATTCGAGAAAGTAATTTATGGAATCACGAACAAAAGCAGAGGTATTTATGGAATGCAAAGCTTTTCCCTGTTGTGCCACAGGCTGAAGGCCTCAAACTAGCTATGTGGCTCATGGGATTTAACTTGGATCAGAATGAAGACATGTTACATTTATGGGAAAATTCTCAGAGGGTCAGCTTAGAAGAAATGCACCGTAGTATAGATTATCGACAGCTTTGTGCAGAATCTAGTAATCATCGGTCAAAGCTTGCAGCTGGGATTGCTAAAGCTTGCATTAGCTATGGGTTGCTTGGTCGCAATTTGTCCAGACTTTGTGCGGAGATTCTCGAGGGAGAGAAGAATGGAATTGATATTTGCAAAAGCTATCTTTCTCTGTGTCCCAATCCTCAGACTAGCAATTTGAGTTTACTGAATTTACCAAAGAGCAGAGCATATCAAGCCCAGGTTGACCTCCATAGAGCTTGCAAGCAAGAACAAAGTGCAAATGTAATGGAGGAAAGTGTATGGGCAGCAGTAGCTGCTGAAACTGCTGCAGCTGTAAGACAGGATCTTGAAGATCAGGCATCAAAGTGTCTTAATGGTGTAGCTACACAAATATGTGATGGATATGAACATCATCACATTGCTAATAGTCAACCACTCCAGCCAAAAAGAGCACATGTTGAATTACCAGTTCGCGTGGATTTTGTCGGTGGCTGGAGTGATACTCCACCATGGAGCCTGGAGAGAAGTGGGTGTGTTTTGAATATGGCAATACATTTGGAGGGAACTCTTCCAGTAGGGGCAGAAATAGTTGTGAGATCAATAGAGGGAATTTTAATACGTGATGATGCAGGAAATCAGGTGCATATTCAGGATTTCAGGTCCATTGCTCCTCCATTTCATGAGGATGATCAATTTCGCTTGGTCAAAGCTGCACTCACTGTGACTGGCATCATCAATCCATCTGACAAAATCATGTCATCAACAGGCCTTGAAATAAGCACATGGGCTAAGGTTCCACGTGGTAGCGGATTGGGGACATCAAGTATCTTGGCAGCTGCTGTTATAAAGGGACTGCAACATGTAATAGGTGGAGATGAGAGTAATGAAAATGTTGCAAGGCTTGTTTTGGTCTTAGAGCAGTTGATGGGCACAGGTGGAGGTTGGCAAGATCAGATTGGGGGTCTTTATCCTGGCATCAAATGTACAACTAGCTTACCTGGCAAACCATTACGGCTCAATATAGAAACTGTTTCAGTAAGTTCTCAATTAGTCTTGGAGCTAGAACAACGCATGCTGGTAGTCTTCACTGGGCAAGTCCGCCTTGCTCATGGAGTGCTGCAGAAAGTTGTAGTTCGATATCTCCAACGTGATGCCCTCTTGATAACAAGTATCAAGCGCCTAGCAAAGCTTGCCAAAATTGGACGGGAATGTTTGATGAGTGGCAATTTGGATGATTTGGGTAGAATCATGCTTGAAGCATGGAGGCTACATCAAGAGCTTGATCCTTATTGTAGTAATACATTTGTGGATAAGCTTTTTGAATATTCTGACCCCTTCTGTTGTGGTTATAAGCTTATTGGAGCAGGTGGAGGTGGTTTTGCATTACTACTAGCTAGAAATAGAGAAGCTGCAGATGATTTAAAAAACTTGTTGAAAGCGTCTGGGTTTCCTATAAAAATATACAGCTGGAGTATGTGCTCAGATAGGATTTCAGGTCTTTCTTAG___AAGTTGCAAAGCATGTTTTCATTGTCATATATATTATCTATTATTCCTATGTTGGAGATATGAATGGTGCTTCAATTATTTTCTAGCCTTACTTCCTCTTATAATTCTTTGTGCACTAGGTTTTAAGCAATTCTTTTCTGGATTGTAATATATTTGCTACTATTACTAGTTTGGCATTCAAATCAACGACAATAACTTTTGGACAGGCACAACTGCATGAACATTTTAAGGTGGCATTAAGTATGACTTATTTGTTGGCTGTTTATAATAGCCTCG

Fln Alignment:

Contig5642___GKPWEKVFSKLGIRESNLWN-HEQKQRYLWNAKLFPVVPQAEGLKLAMWLMGFNLDQNEDMLHLWENSQRVSLEEMHRSIDYRQLCAESSNHRSKLAAGIAKACISYGLLGRNLSRLCAEILEGEKNGIDICKSYLSLCPNPQTSNLSLLNLPKSRAYQAQVDLHRACKQEQSANVMXXXXXXXXXXXXXXXXRQDLEDQASKCLNGVATQICDGYEHHHIAN--SQP---LQPKRAHVELPVRVDFVGGWSDTPPWSLERSGCVLNMAIHLEGTLPVGAEIVVRSIEGILIRDDAGNQVHIQDFRSIAPPFHEDDQFRLVKAALTVTGIINPSDKIMSSTGLEISTWAKVPRGSGLGTSSILAAAVIKGLQHVIGGDESNENVARLVLVLEQLMXXXXXXXXXXXXLYPGIKCTTSLPGKPLRLNIETVSVSSQLVLELEQRMLVVFTGQVRLAHGVLQKVVVRYLQRDALLITSIKRLAKLAKIGRECLMSGNLDDLGRIMLEAWRLHQELDPYCSNTFVDKLFEYSDPFCCGYKLIXXXXXXXXXXXXRNREAADDLKNLLKA-SGFPIKIYSWSMC
Q9LNJ9______________GKPLEKVLFDLGIEESDLWSSYVAQDRCLWNAKLFPILTYSEMLKLASWLMGLDDSRNKEKIKLWRSSQRVSLEELHGSINFPEMCNGSSNHQADLAGGIAKACMNYGMLGRNLSQLCHEILQKESLGLEICKNFLDQCPKFQEQNSKIL--PKSRAYQVEVDLLRACGDEAKAIELEHKVWGAVA-----------EETASAVRYGFREHLLESSGKSHSENHISHPDRVFQPRRTKVELPVRVDFVGGWSDTPPWSLERAGYVLNMAITLEGSLPIGTIIETTNQMGISIQDDAGNELHIEDPISIKTPFEVNDPFRLVKSALLVTGIVQ--ENFVDSTGLAIKTWANVPRGSGLGTSSILAAAVVKGLLQISNGDESNENIARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPMRLQVVPLLASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLISSIKRLTELAKSGREALMNCEVDEVGDIMSEAWRLHQELDPYCSNEFVDKLFEFSQPYSSGFKLVGAGGGGFSLILAKDAEKAKELRQRLEEHAEFDVKVYNWSIC

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
1490		80		20	0.999996
1516	90			10	0.90298
1521	10	90			0.90298
1523		10		90	0.90298
1524	11		88		0.923564
1597			11	88	0.923564
1599	88	11			0.923564
1600			11	88	0.923564
1605		11	88		0.923564
1607	88			11	0.923564
1612		11	88		0.923564
1614			88	11	0.923564
1615		11	88		0.923564
1616	11			88	0.923564
1715	12		87		0.992554
1717	87		12		0.992554
1718			12	87	0.992554
1767	22			77	0.999999
1769		77		22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain