SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5633

Length: 2378 nt

UniGene Fasta

>sp_v3.0_unigene5633
ATGGGGAGTTCTACGACACATTATATGATATATACGAGTGTTTATGCGTTTTAATAGGTCGCTGAACGATTCTAATTTCTAATCGAGGGCTGAAATCGAGCATATGTCGGTGGCAAGGATTTGACCGTCGATTATGGTAGACGCGGTAGCTTAAAGCAGAATCTGTGAGGCTTTCCCGTCTTGGTCTCCGGACCTGGCATTCTTCCATAATTTTAAAAGTCCGAATTTCTCCATTTCGCGAATTGGATCAGTGGGTTTCGATCCGTAACATCGAGGTTTGTTCCATATAGGCTTTGGCCAATCTTAAGAAGGGTTGGGTGGTTCCCTGTGTATTTCCATGGCATTTGAATGCCAGAAGGGATGGCAGGTATCTTCTGGTTCAGCTAATGATGCTTGGAATGAAGAGATAGTGTCCTGCCTGGAGCTTCCCAGTCCTCATTCCTTACGAGTAAATGAAGTAGAGATTCAAACTAAGACTAGCAGCAAAGCAGAGAGATCAACTTATGCATTAACAGATATTGATCACAATGGCCATTGCTCATTTCTTGAACTTCCTCCTGTACTAATATCGGAGATCCTCAATCATCTCAATGCAAGAGAACTCAGCATTGTTTCCTCAGTATGAGCCATGGATGGAAGGAATTCTATTGTGAGAGATGGGGGCTTCCTGCACATCGAAAACCTTCTGAAACATCTGCCATGCCACCAGAAAAATCATGGAGAGAGCTCTACCTTGAGAGAGAAGCTCGTAGCAAGGCTTTTCTAGGCCGATTTAAAATAGATGTTTTCCATGGCCATACTGAACCCATACGGTCTGTTTGTCTTCTGGCATTTGCAAATCTCATTTTTACTGCAGGATATGATACAATGATCAGAATGTGGAACATGGAGGAAGGTTTTCTGATTGAACAGTCACGGCCACTTCGTAGCACTATACGAGCCATAGCAGCAGATATGGAGATGTTGGTTGTGGGTGGAACTGAGGCTTTTGTGAGAGGTTGGCGAGCAATTCCTGAGCTCCCTCATTTGTTTGACATTTCGGGAATTACAGGTCAGAACACTGAATTTTGCCTTCGTGGACATGTTGGACCCATTACATGCCTGGGTCTTGACTCTGCCAGAATTTATAGCGGCTCTTGGGATATGAGCATTCGTGTCTGGGATCGAGCTTCTTTGAAGTGTCTGAAAATTTTCAAGCATGGAGATTGGGTGTGGTCACTGGTTGTGAGAGGCCCTCACCTTATGAGCGCTGCAGGCAGTGACATTTACACATGGGATATTGAAACAGGACACCAGATGAGGGTGAGGCTAAATGCCCATGTTGGCAATGCATACTCTTTGGTATGCAGTCGATCTGGCCATTTGCTGTTTACTGGAGGTGAGGATGGAGCTATTCATATGTTTGAGGACCGATCTCCCCGTCATCACACTAGTCATTCAGATGATGATGTTATAGTTAATGATAAACCAGTTGCTTCATGGGTTCCTCATTCCTGCCCAGTTTATTCACTTGCATTTGAGGATCCATGGCTTGTCTCTGCATCTGGGGATGGCAAGCTTGCCATGATGGATGTCAGGAAGCTGCTAAAGTCAAGCAGTAATTTCAAGTCTGAAAAAGCTGCTAATAGTCGTCAGTGTAAGAACACCGCAATTGTAACATTGCAAAATGTGGAGCCACCTCAAAGGTTGCTGCACGGTTTCTATCAAAACTTGTATTCTGTAGACATTGGTGCTGAGAGAATTGTATGTGGAGGTGAGGAGGGAGTTCTGCGGATGTGGGACTTCACCCAGGCTTTGGAGATTGAACGCAGAGTGCAGGCCTCAAGGAATGTGCGTTTGGAGAATAGGTCAAGGAGGAAAAAAGCAAATGCAGAAAATGATAGCAAAGCTAAACAGGTGGATCCTTGCTCCATTGCAGCTAAAAGCTGTGAGAGACATGGCGGGGGAAACAGGGTTTGGAAAAGGCGCAATGAGACTGGCAAAGTCCAGGCTTAGATTCAGTTTAAAAGCTACTTGGGGGCAATTTATCCTTTATTAGGTTAGGCTTAGATTAATTATGAAAGCTATTCGGGGTTCTTTGCCCTTAGTTTGCTTAAAGAATAGGCTTCTAATTTTCACAATGTCCAGTTAAATGTTACATTCAGGTTAGAATATTGCATTTAATCTCTGGCAGATCATCCGAAAGCTCGTATCATAAAGTATGTGCGGTTTGGAGTGAGGAGACCACAAGATTTTATCTATCAGATCCTTCTAATTGAGGAAGTGTTACTCAATAATCATGGAACTTCTAGGAGTTGCTTGACTTATTGGGTTAAAATTGGTTTGCACACAAAATATGATCTGGGCTTCTTTAAATAACCTTTATTCTATATGGTTGT

Ace file of the UniGene sp_v3.0_unigene5633

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box and wd40 domain protein, putative n=1 Tax=Ricinus communis RepID=B9S6L1_RICCO	-	-	0.0	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	21%

Source	Gene names
Sma3	At5g21040; GSVIVT00017357001; H0114G12.8; H0714H04.2; OSJNBa0058K23.14; Os04g0619700; OsI_17414; OsI_17446; OsJ_16194; PHYPADRAFT_190469; POPTRDRAFT_556865; RCOM_1109740; T10F18.70; l1332.4;

Source	GOs	Term	Type	e value	Identity
Sma3	cellular response to phosphate starvation	GO:0016036	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G21040.1	FBX2 F-box protein 2 chr5:7145058-7146677 REVERSE LENGTH=539	49%
RefSeq	Arabidopsis thaliana	NP_001190352.1	F-box protein 2 [Arabidopsis thaliana]	49%
RefSeq	Populus trichocarpa	XP_002312850.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX76

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is longer than subject: 482 - 434

Fln protein: TSSCTNIGDPQSSQCKRTQHCFLSMSHGWKEFYCERWGLPAHRKPSETSAMPPEKSWRELYLEREARSKAFLGRFKIDVFHGHTEPIRSVCLLAFANLIFTAGYDTMIRMWNMEEGFLIEQSRPLRSTIRAIAADMEMLVVGGTEAFVRGWRAIPELPHLFDISGITGQNTEFCLRGHVGPITCLGLDSARIYSGSWDMSIRVWDRASLKCLKIFKHGDWVWSLVVRGPHLMSAAGSDIYTWDIETGHQMRVRLNAHVGNAYSLVCSRSGHLLFTGGEDGAIHMFEDRSPRHHTSHSDDDVIVNDKPVASWVPHSCPVYSLAFEDPWLVSASGDGKLAMMDVRKLLKSSSNFKSEKAANSRQCKNTAIVTLQNVEPPQRLLHGFYQNLYSVDIGAERIVCGGEEGVLRMWDFTQALEIERRVQASRNVRLENRSRRKKANAENDSKAKQVDPCSIAAKSCERHGGGNRVWKRRNETGKVQA*

Protein Length: 483

Fln nts: ATGGGGAGTTCTACGACACATTATATGATATATACGAGTGTTTATGCGTTTTAATAGGTCGCTGAACGATTCTAATTTCTAATCGAGGGCTGAAATCGAGCATATGTCGGTGGCAAGGATTTGACCGTCGATTATGGTAGACGCGGTAGCTTAAAGCAGAATCTGTGAGGCTTTCCCGTCTTGGTCTCCGGACCTGGCATTCTTCCATAATTTTAAAAGTCCGAATTTCTCCATTTCGCGAATTGGATCAGTGGGTTTCGATCCGTAACATCGAGGTTTGTTCCATATAGGCTTTGGCCAATCTTAAGAAGGGTTGGGTGGTTCCCTGTGTATTTCCATGGCATTTGAATGCCAGAAGGGATGGCAGGTATCTTCTGGTTCAGCTAATGATGCTTGGAATGAAGAGATAGTGTCCTGCCTGGAGCTTCCCAGTCCTCATTCCTTACGAGTAAATGAAGTAGAGATTCAAACTAAGACTAGCAGCAAAGCAGAGAGATCAACTTATGCATTAACAGATATTGATCACAATGGCCATTGCTCATTTCTTGAACTTCCTCCTGTACTAATATCGGAGATCCTCAATCATCTCAATGCAAGAGAACTCAGCATTGTTTCCTCAGTATGAGCCATGGATGGAAGGAATTCTATTGTGAGAGATGGGGGCTTCCTGCACATCGAAAACCTTCTGAAACATCTGCCATGCCACCAGAAAAATCATGGAGAGAGCTCTACCTTGAGAGAGAAGCTCGTAGCAAGGCTTTTCTAGGCCGATTTAAAATAGATGTTTTCCATGGCCATACTGAACCCATACGGTCTGTTTGTCTTCTGGCATTTGCAAATCTCATTTTTACTGCAGGATATGATACAATGATCAGAATGTGGAACATGGAGGAAGGTTTTCTGATTGAACAGTCACGGCCACTTCGTAGCACTATACGAGCCATAGCAGCAGATATGGAGATGTTGGTTGTGGGTGGAACTGAGGCTTTTGTGAGAGGTTGGCGAGCAATTCCTGAGCTCCCTCATTTGTTTGACATTTCGGGAATTACAGGTCAGAACACTGAATTTTGCCTTCGTGGACATGTTGGACCCATTACATGCCTGGGTCTTGACTCTGCCAGAATTTATAGCGGCTCTTGGGATATGAGCATTCGTGTCTGGGATCGAGCTTCTTTGAAGTGTCTGAAAATTTTCAAGCATGGAGATTGGGTGTGGTCACTGGTTGTGAGAGGCCCTCACCTTATGAGCGCTGCAGGCAGTGACATTTACACATGGGATATTGAAACAGGACACCAGATGAGGGTGAGGCTAAATGCCCATGTTGGCAATGCATACTCTTTGGTATGCAGTCGATCTGGCCATTTGCTGTTTACTGGAGGTGAGGATGGAGCTATTCATATGTTTGAGGACCGATCTCCCCGTCATCACACTAGTCATTCAGATGATGATGTTATAGTTAATGATAAACCAGTTGCTTCATGGGTTCCTCATTCCTGCCCAGTTTATTCACTTGCATTTGAGGATCCATGGCTTGTCTCTGCATCTGGGGATGGCAAGCTTGCCATGATGGATGTCAGGAAGCTGCTAAAGTCAAGCAGTAATTTCAAGTCTGAAAAAGCTGCTAATAGTCGTCAGTGTAAGAACACCGCAATTGTAACATTGCAAAATGTGGAGCCACCTCAAAGGTTGCTGCACGGTTTCTATCAAAACTTGTATTCTGTAGACATTGGTGCTGAGAGAATTGTATGTGGAGGTGAGGAGGGAGTTCTGCGGATGTGGGACTTCACCCAGGCTTTGGAGATTGAACGCAGAGTGCAGGCCTCAAGGAATGTGCGTTTGGAGAATAGGTCAAGGAGGAAAAAAGCAAATGCAGAAAATGATAGCAAAGCTAAACAGGTGGATCCTTGCTCCATTGCAGCTAAAAGCTGTGAGAGACATGGCGGGGGAAACAGGGTTTGGAAAAGGCGCAATGAGACTGGCAAAGTCCAGGCTTAG___ATTCAGTTTAAAAGCTACTTGGGGGCAATTTATCCTTTATTAGGTTAGGCTTAGATTAATTATGAAAGCTATTCGGGGTTCTTTGCCCTTAGTTTGCTTAAAGAATAGGCTTCTAATTTTCACAATGTCCAGTTAAATGTTACATTCAGGTTAGAATATTGCATTTAATCTCTGGCAGATCATCCGAAAGCTCGTATCATAAAGTATGTGCGGTTTGGAGTGAGGAGACCACAAGATTTTATCTATCAGATCCTTCTAATTGAGGAAGTGTTACTCAATAATCATGGAACTTCTAGGAGTTGCTTGACTTATTGGGTTAAAATTGGTTTGCACACAAAATATGATCTGGGCTTCTTTAAATAACCTTTATTCTATATGGTTGT

Fln Alignment:

Contig5633___QSSQCKRTQHCFLSMSHGWKE-FYCERWGLPAHRKPSETSAMPPEKSWRELYLEREARSKAFLGRFKIDVFHGHTEPIRSVCLLAFANLIFTAGYDTMIRMWNMEEGFLIEQ-SRPLRSTIRAIAADMEMLV--VGGTEAFVRGWRAIPELPHLFDISGITGQNTEFCLRGHVGPIT---CLGLDSARIYSGSWDMSIRVWDRASLKCLKIFK-HGDWVWSLVVRGPHLMSAAGS--DIYTWDIETGHQM-RVRLNAHVGNAYSLVCSRSGHLLFTGGEDGAIHMFEDRSPRHHTSHSDDDVIVNDKPVASWVPHSCPVYSLAFEDPWLVSASGDGKLAMMDVRKLLKSSSNFKSEKAANSRQCKNTAIVTLQNVEPPQRLLHGFYQNLYSVDIGAERIVCGGEEGVLRMWDF
A9NX76______________RTSAVTKSWYSIIQRSSLWRDAYYKQRHSLTNHFKQGFLPEMPP-KDWVRQLVSQQHRAALVHGSVQVHCWKGHSIGV-NCCRMQMGSILTGVG-DQTARIWCSKSFHCLEEYSTPSKAALVDLDFDESKIVGLVGG------------------DICIWKRHGSSHMLRPRGGPIQHAHCLCYADPEAAIGCRDGTIRIFDMYSNQCSRIFRQHGGAVTCLSIVDEQLLISGTSLGCLSVSDAASGQKIASLRQSTAVTGISCLWVNQGSSQVFSGTTSGHAYSWDLRMYRP----------LWETRVSPSVIYS--MHSQAIDSSTLVLGGIDGVLRIIDANNGQILSSYVATAKMANISDGMIAKCTAKKVSSPLDKIPKSLRRPITCVAIGLNKVVTVHNDKNIMLWTF

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1976	10	90			0.90298
1982	90		10		0.90298
2053	76	23			1.0
2199			81	18	0.999994

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain