SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5632

Length: 2129 nt

UniGene Fasta

>sp_v3.0_unigene5632
CGTCGTGACCTTGGCTGTCACTCAATAGAAAGAAACATATTTAAATTCTTGTATAAACACGACGTGACATTGCAGGTGGATCCCTATATTTTTTGGTTTCTGTTATGAGTGCCCTTGTATGAATATATGTTTCTGGCACCCTGCAAAACAAAGATATATTTAGAGGTCAACTGATTAACTATACAATCGCTCAATTGGCGGCTTCTTCTTTCTCTTTCTTCCTGTCACAGGTGCTTTTGAACCATCATGGCTCAAAAGCGTTTATCCAAGAAGAAGAAGCCGCCCAGTATGGCTCGCGCAGAGACCACTTCTCTTATCTCAGTACTGCAGGCAGAGCATCAAAAGGAGCTGGAAGAGTTAGTACTGACAAAACGCCCATTTGAAACGCTGAAGTTATTTGCTTTGGCCATTTTTCATTACCTGGAGCAGGTGGCATCATATGTCATAAATAGAGGGGCATCTTTCAGTCTTTTGACTCTTCTGGGGGTAGCCCTTGGCATTATGCTAATTATGCTCGATGGACCCCATGAGAAGCTTGTCAATGAGCTCCGTATCTACTTAGGATTTATTATTTGGTGGCTAGGCCTTGGAGTGGCTTCATCAATTGGCTTAGGATCTGGCTTGCACACTTTTGTGCTGTATTTGGGCCCTCATATTGCATTCTTTACATTAAAAGCTACACAATGTGGGCGAGTTGATTTAAAAAGTGCTCTATATGACACTATTCTACTGAACAGAGTGCCGTCATGGATTGAGAAAGACTGCTCGGAGATAGGTCCACCATTATATCCACCTTTTATGGGTTCTGAGCGTTTCAGGACACCTCTTCACAAAATTTTGCCTCAGGTTCAACTGGAAGCTGTTCTGTGGGGAATTGGAACTGCCCTTGGGGAGCTTCCTCCATATTTTCTCTCCAGAGCAGCTTGCTTATCTGGCAAGAAATTAGAAGACCTGGAGCAGTTGAATGCCCTTGCTGATGAAAGTGGAACCATGTCTGTTTTGATGATGCGGCTCAAGTGTTGGTTTTACTCTAAGTCTCGGCATCTTAATTTCTTTACTATACTGATCCTTGCATCGGTACCCAATCCATTGTTTGACCTTGCAGGCATCATGTGTGGTCAGTTGTCAGTTTCATTTTGGAGATTTTTCATTCCAACTATGATTGGAAAGGCTATCATCAAAACCCATATACAAACACTTTTTATTATATTGGTTTGCAACAATCAATTGGTGGAGTGGCTTGTATGGATACTTAACCACATACCTGCACTATCTCATACATCAGCCCATTTCATGGCAAGATTGCACTCTCTCAGGGAAAAGTTCAACGACAACCCTGTGATACCGTCAAGAACATCAAAGGCTGAACAGTGGAATTTTTCATTTTCCTTCATGTGGAACACTTTTATATGGCTAATGCTTATGGGATTCTTCAGTGAAATAATCACTGGGACTGCACAACGCTTCCTCAAGGAAAGGCAAAGAACAACCATCAATGCTTTAACTTCAGAGGAAAATCCTAAAAGTCGTTCTGCGAACTCTAAAAGGTCTTTTGCAACAGGAAAATGTTAATTGGAGTGAGAATGTTGGTTCATTTATGTTTGTTGCTAGTGCAAGAAATGTCTATCTCTAGCTTCCTGATTTCTGGCAATATGAGAATGGTTCTGTATGCATACCAATGCTACAAAATGGGTATACATAGGGAAATTCTTTCATTCCATTTCCTCCTTGTACATGACATGTTTTCTATTTCAGGTTGTTTTTAAGAACATAAATTCTGTATCACTGCCGCAGTTCCATTTTATGTGCTTTCCTTCCCAGCAGTTGTACACATGACTCAGAAATCCTTCCATGCCTATGTCAATACTGGAAAGGTTGAAATTTGTGCAGCTAGCATGTTGGTCTTGATCAAGGCAAAATTCTCAGTTGTAGCTCAATTTAACTCATGCACATGCCCCAATCAAGTGTTTTGGTGTTCCACTCAGTAGTGATTATAATGTAACAGTATTTGTTCACACATATTTTCCTATTGGAAGCCTAAACAATACACTGGAGCAATAGGTAGTGTTGTCCATATGATACCTCTCAATCCTTTACTAGTAACCAGTTTCAATATTCTGTAGAAAGTT

Ace file of the UniGene sp_v3.0_unigene5632

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuole membrane protein, putative n=1 Tax=Ricinus communis RepID=B9RSQ1_RICCO	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%

Source	Gene names
Sma3	AT1G05360; AT4g14950; At1g05360; At4g14950; GSVIVT00019959001; OJ1121_A05.14; Os01g0778700; OsI_03961; OsI_26550; OsJ_03668; OsJ_24810; P0010B10.5; PHYPADRAFT_112472; PHYPADRAFT_118129; POPTRDRAFT_1090329; POPTRDRAFT_1112915; POPTRDRAFT_295274; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	ribokinase activity	GO:0004747	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	D-ribose metabolic process	GO:0006014	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b5	IPR001199	-	-
Sma3	Ribokinase	IPR002139	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G14950.1	SNARE associated Golgi protein family chr4:8545517-8547722 FORWARD LENGTH=416	55%
RefSeq	Arabidopsis thaliana	NP_567450.1	SNARE associated Golgi protein [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002312524.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRU2

Fln msg:

Fln protein: MAQKRLSKKKKPPSMARAETTSLISVLQAEHQKELEELVLTKRPFETLKLFALAIFHYLEQVASYVINRGASFSLLTLLGVALGIMLIMLDGPHEKLVNELRIYLGFIIWWLGLGVASSIGLGSGLHTFVLYLGPHIAFFTLKATQCGRVDLKSALYDTILLNRVPSWIEKDCSEIGPPLYPPFMGSERFRTPLHKILPQVQLEAVLWGIGTALGELPPYFLSRAACLSGKKLEDLEQLNALADESGTMSVLMMRLKCWFYSKSRHLNFFTILILASVPNPLFDLAGIMCGQLSVSFWRFFIPTMIGKAIIKTHIQTLFIILVCNNQLVEWLVWILNHIPALSHTSAHFMARLHSLREKFNDNPVIPSRTSKAEQWNFSFSFMWNTFIWLMLMGFFSEIITGTAQRFLKERQRTTINALTSEENPKSRSANSKRSFATGKC*

Protein Length: 443

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGAAAGAAACATATTTAAATTCTTGTATAAACACGACGTGACATTGCAGGTGGATCCCTATATTTTTTGGTTTCTGTTATGAGTGCCCTTGTATGAATATATGTTTCTGGCACCCTGCAAAACAAAGATATATTTAGAGGTCAACTGATTAACTATACAATCGCTCAATTGGCGGCTTCTTCTTTCTCTTTCTTCCTGTCACAGGTGCTTTTGAACCATC_-_ATGGCTCAAAAGCGTTTATCCAAGAAGAAGAAGCCGCCCAGTATGGCTCGCGCAGAGACCACTTCTCTTATCTCAGTACTGCAGGCAGAGCATCAAAAGGAGCTGGAAGAGTTAGTACTGACAAAACGCCCATTTGAAACGCTGAAGTTATTTGCTTTGGCCATTTTTCATTACCTGGAGCAGGTGGCATCATATGTCATAAATAGAGGGGCATCTTTCAGTCTTTTGACTCTTCTGGGGGTAGCCCTTGGCATTATGCTAATTATGCTCGATGGACCCCATGAGAAGCTTGTCAATGAGCTCCGTATCTACTTAGGATTTATTATTTGGTGGCTAGGCCTTGGAGTGGCTTCATCAATTGGCTTAGGATCTGGCTTGCACACTTTTGTGCTGTATTTGGGCCCTCATATTGCATTCTTTACATTAAAAGCTACACAATGTGGGCGAGTTGATTTAAAAAGTGCTCTATATGACACTATTCTACTGAACAGAGTGCCGTCATGGATTGAGAAAGACTGCTCGGAGATAGGTCCACCATTATATCCACCTTTTATGGGTTCTGAGCGTTTCAGGACACCTCTTCACAAAATTTTGCCTCAGGTTCAACTGGAAGCTGTTCTGTGGGGAATTGGAACTGCCCTTGGGGAGCTTCCTCCATATTTTCTCTCCAGAGCAGCTTGCTTATCTGGCAAGAAATTAGAAGACCTGGAGCAGTTGAATGCCCTTGCTGATGAAAGTGGAACCATGTCTGTTTTGATGATGCGGCTCAAGTGTTGGTTTTACTCTAAGTCTCGGCATCTTAATTTCTTTACTATACTGATCCTTGCATCGGTACCCAATCCATTGTTTGACCTTGCAGGCATCATGTGTGGTCAGTTGTCAGTTTCATTTTGGAGATTTTTCATTCCAACTATGATTGGAAAGGCTATCATCAAAACCCATATACAAACACTTTTTATTATATTGGTTTGCAACAATCAATTGGTGGAGTGGCTTGTATGGATACTTAACCACATACCTGCACTATCTCATACATCAGCCCATTTCATGGCAAGATTGCACTCTCTCAGGGAAAAGTTCAACGACAACCCTGTGATACCGTCAAGAACATCAAAGGCTGAACAGTGGAATTTTTCATTTTCCTTCATGTGGAACACTTTTATATGGCTAATGCTTATGGGATTCTTCAGTGAAATAATCACTGGGACTGCACAACGCTTCCTCAAGGAAAGGCAAAGAACAACCATCAATGCTTTAACTTCAGAGGAAAATCCTAAAAGTCGTTCTGCGAACTCTAAAAGGTCTTTTGCAACAGGAAAATGTTAA___TTGGAGTGAGAATGTTGGTTCATTTATGTTTGTTGCTAGTGCAAGAAATGTCTATCTCTAGCTTCCTGATTTCTGGCAATATGAGAATGGTTCTGTATGCATACCAATGCTACAAAATGGGTATACATAGGGAAATTCTTTCATTCCATTTCCTCCTTGTACATGACATGTTTTCTATTTCAGGTTGTTTTTAAGAACATAAATTCTGTATCACTGCCGCAGTTCCATTTTATGTGCTTTCCTTCCCAGCAGTTGTACACATGACTCAGAAATCCTTCCATGCCTATGTCAATACTGGAAAGGTTGAAATTTGTGCAGCTAGCATGTTGGTCTTGATCAAGGCAAAATTCTCAGTTGTAGCTCAATTTAACTCATGCACATGCCCCAATCAAGTGTTTTGGTGTTCCACTCAGTAGTGATTATAATGTAACAGTATTTGTTCACACATATTTTCCTATTGGAAGCCTAAACAATACACTGGAGCAATAGGTAGTGTTGTCCATATGATACCTCTCAATCCTTTACTAGTAACCAGTTTCAATATTCTGTAGAAAGTT

Fln Alignment:

Contig5632___SLISVLQAEHQKELEELVLTKRPFETLKLFALAIFHYLEQVASYVINRGASFSLLTLLGVALGIMLIMLDGPHEKLVNELRIYLGFIIWWLGLGVASSIGLGSGLHTFVLYLGPHIAFFTLKATQCGRVDLKSALYDTILLNRVPSWIEKDCSEIGPPLYPPFMGSERFRTPLHKILPQVQLEAVLWGIGTALGELPPYFLSRAACLSGKKLEDLEQLNA-LADESGTMSVLMMRLKCWFYSKSRHLNFFTILILASVPNPLFDLAGIMCGQLSVSFWRFFIPTMIGKAIIKTHIQTLFIILVCNNQLVEWL----VWILNHIPALSHTSAHFMARLHSLREKFNDNPVIPSRTSKAEQWNFSFSFMWNTFIWLMLMGFFSEIITGTAQRFLKERQRTTINALTSEENPKSRSANSKRSFAT
B8LRU2______________SRISRLEMEHQKHLEGLVLTKHPFDTLKIFTLAILEYIKQSAIYAMTHGWLFLLTTLLSLSIGVILLTVNGPHEKHVDELVHYFRFGLWWVGLGVASSIGLGSGLHTFVLYLGPHIAIFTLRATQCGRVDLKSAPYDTIQLNRAPSWIDKSCSDFGSPLFPQLIDSERFRTPLLSILPQVQLEAILWGIGTAIGELPPYFVSRAARLSGRRPEALEELDASFVEGSGFLSVWLMRLKRWTFSQSQHLNFFTILVLASVPNPLFDLAGIMCGQLSVPFWKFFTATLIGKAIIKTHIQTIFIILVCNNQLLEWVENEFILILEHIPALSYILPHLMDKLHTARERFNHQHNMPPLSSKANKWDFSFATIWNTFVWLMLIGFFNKIITATAQSFLKEKQKKEMDELIAEGGFKSQREKPECSNGT

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
411	11			88	0.923564
412		10		90	0.90298
413			10	90	0.90298
416	90		10		0.90298
418			10	90	0.90298
423			90	10	0.90298
428	90			10	0.90298
432		10	90		0.90298
433	10		90		0.90298
484			75	25	1.0
664			10	90	0.90298
665			10	90	0.90298
666			10	90	0.90298
777		12		87	0.992554
783	85			14	0.993533
785		14		85	0.993533
786	85		14		0.993533
787		14		85	0.993533
800	16			83	0.994512
801		16	83		0.994512
802	16		83		0.994512
803			83	16	0.994512
1032			16	83	0.999991
1078	10		90		0.90298
1079		10		90	0.90298
1158		12		87	0.992554
1331	83		16		0.994512
1464	22	77			1.0
1645		83		16	0.999991
1676	11	88			0.923564
1679	88			11	0.923564
1891		53	46		1.0
1892			13	86	0.999973
1900			13	86	0.999973
1926			50	50	1.0
1931	50		50		1.0
1932		50	50		1.0
2013	20			80	0.995493
2016		80		20	0.995493
2017	80			20	0.995493
2026		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
268	279	AAG AAG AAG AAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain