SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5597

Length: 1898 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5597

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidase M20/M25/M40 family protein [Arabidopsis thaliana] gb\|AAL75900.1\| AT4g38220/F20D10_340 [Arabidopsis thaliana] gb\|AEE86894.1\| Peptidase M20/M25/M40 family protein [Arabidopsis thaliana]	-	-	0.0	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Aminoacylase-1	-	-	1.134e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aminoacylase.	EC:3.5.1.14	-	1.093e-08	-

Source	KEGGs	Term	e value	Identity
Sma3	Arginine and proline metabolism	00330	1.093e-08	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	1.093e-08	%
Sma3	Metabolic pathways	01100	1.093e-08	%
Sma3	Biosynthesis of secondary metabolites	01110	1.093e-08	%

Source	Gene names
Sma3	AT4G38220; AT4g38220; At1g44180; At1g44820; At4g38220; F20D10.340; GSVIVT00015362001; GSVIVT00036293001; GSVIVT00036294001; Os06g0210200; Os08g0511900; OsI_22115; OsI_29850; OsJ_27905; P0021C04.7; P0711H09.5; PHYPADRAFT_168885; PHYPADRAFT_207940; PHYPADRA

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	aminoacylase activity	GO:0004046	Molecular Function	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ArgE/DapE/ACY1/CPG2/YscS, conserved site	IPR001261	-	-
Sma3	Peptidase M20	IPR002933	-	-
Sma3	N-acyl-L-amino-acid amidohydrolase	IPR010159	-	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	-
Sma3		IPR017909	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38220.2	Peptidase M20/M25/M40 family protein chr4:17925251-17926919 FORWARD LENGTH=433	66%
RefSeq	Arabidopsis thaliana	NP_568036.2	Peptidase M20/M25/M40 family protein [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002312793.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9K6

Fln msg:

Fln protein: MGLKLSLNISAFAASFLLLLAILYSSPSSATLEENSERIVSRFQQYLQINTAQPNPNYKQAVGFILSQAESIGLPAQILEFVKDKPVVLLTWQGKQKSLPSILFNSHTDVVPAEENKWSHGPFSAHRDSKGDIYARGSQDMKCVSVQYLEALRNLKKRGFVPLRTIHVSFVPDEEIGGRDGAGMLVSSEEFQRLNVGVVLDEGLASPDESYRVFYGERSTWWLTIKAVGAPGHGSKLYDNSAMENLLKSIESISRFRASQFDIVKAGLAAEGDVTSVNPVFMKAGTPTPTGFVMNLQPSEAEAGFDIRVSPGTNAESLERRIAEEWAPVSRNMTYEFKQKEPIQNKLGLPLVTVANDSNPWWTLLEVAILKAGGKLHKPEIFPAATDARYVRELGIPAFGFSPMANTPILLHDHNEFLNEAEYLKGIGVYEAIIESYASYVEASEDRESLSEL*

Protein Length: 455

Fln nts: TACAACTGATAAATATCAGTAACCACATTACCCAGTATGGCTGCTCTAACACCAGTACTGGCTAAACAGAAGGGTTGACCGCAAAA_-_ATGGGACTAAAACTCTCCTTAAACATCTCTGCCTTTGCTGCAAGTTTCCTTCTCCTTCTTGCCATCTTATATTCATCCCCATCATCGGCAACGTTAGAAGAGAATTCAGAACGTATAGTTTCCAGGTTCCAACAGTATCTCCAAATCAACACTGCACAACCCAATCCCAACTACAAGCAGGCAGTGGGCTTCATACTGTCACAGGCAGAATCCATTGGTTTACCTGCCCAAATCCTAGAATTCGTGAAGGATAAACCAGTTGTGCTCCTAACATGGCAGGGGAAACAGAAATCCCTGCCATCCATACTGTTCAACTCCCACACAGATGTCGTTCCCGCAGAGGAAAACAAGTGGTCTCACGGTCCGTTCTCCGCCCACAGGGACTCCAAGGGAGATATCTACGCGAGGGGCTCACAAGACATGAAGTGTGTAAGCGTACAGTATCTTGAAGCCCTCAGAAATCTAAAGAAAAGGGGATTTGTTCCTCTCCGGACCATTCATGTTTCTTTTGTTCCAGATGAAGAGATCGGGGGGCGTGATGGCGCAGGAATGCTTGTAAGTTCGGAGGAGTTTCAGAGGTTGAATGTGGGCGTGGTTTTGGATGAAGGACTTGCTTCCCCTGATGAGAGTTACAGAGTGTTCTATGGGGAGAGGTCTACTTGGTGGCTTACTATAAAAGCAGTGGGTGCTCCTGGCCATGGCTCAAAGCTATATGATAATAGCGCGATGGAGAATCTGTTGAAAAGCATTGAGAGTATAAGTCGTTTCAGAGCTTCTCAATTTGATATTGTCAAGGCTGGATTGGCAGCTGAGGGTGACGTGACTTCTGTGAATCCAGTTTTTATGAAAGCAGGAACCCCTACTCCCACGGGTTTTGTTATGAATCTTCAACCCTCTGAGGCTGAGGCGGGTTTTGACATACGTGTTTCACCAGGTACCAATGCCGAATCGCTTGAAAGAAGAATTGCAGAAGAATGGGCACCTGTGTCACGCAATATGACATATGAGTTCAAGCAAAAGGAACCTATCCAGAACAAGTTGGGGCTTCCGCTTGTGACAGTTGCAAATGATTCTAATCCATGGTGGACATTGCTAGAGGTGGCCATCTTGAAAGCCGGAGGAAAGCTTCATAAGCCAGAGATTTTCCCAGCTGCAACAGATGCTCGCTATGTGCGAGAACTTGGGATTCCTGCATTTGGGTTCTCACCAATGGCAAATACTCCTATTTTGCTTCATGATCACAATGAGTTCTTAAATGAAGCTGAATACTTAAAAGGAATTGGAGTATATGAGGCAATTATTGAATCCTATGCATCTTATGTGGAAGCTTCTGAGGATCGAGAATCTTTATCAGAGTTGTAA___AGATTCCACGTGTTTATGGCAGGCACCTCGGTTTAGTGAGAACTAGCTTCTGGAATATGCTGAGTTATTGTCCCAAAGAAGTCACCCTCATTTTCTTTGTGAAGAGAATGATTCTCATTGTTGTAAATAGATTTCTTTGGACGCTTGGAAGTTTTACATGCACTTTAAAACTATCAATGCAATTGATTACCAAATAAATGAGAACCATAGATTGTAAATAAAGAAAAACGAGGATACAGTTTCTCAATATTTCCTTGGCCAACTGAGATCATCTCAAGCATTTTAGGTAATGACTTACTAGTTTGAATTTAAAATGCGTCGGTTTCCTCATTTTGGCAAGTTCTCATTGTACCAAGAAAAGTGAAGTGAAATCTATAGTACAAGGAGACGTGTAACGTTTGTGCCTATGGCTGATGTGACATGTGGCATAAGAAAGCTCAATATAATACT

Fln Alignment:

Contig5597___IVSRFQQYLQINTAQPNPNYKQAVGFILSQAESIGLPAQILEFVKDKPVVLLTWQGKQKSLPSILFNSHTDVVPAEENKWSHGPFSAHRDSKGDIYARGSQDMKCVSVQYLEALRNLKKRGFVPLRTIHVSFVPDEEIGGRDGAGMLVSSEEFQRLNVGVVLDEGLASPDESYRVFYGERSTWWLTIKAVGAPGHGSKLYDNSAMENLLKSIESISRFRASQFDIVKAGLAAEGDVTSVNPVFMKAGTPTPTGFVMNLQPSEAEAGFDIRVSPGTNAESLERRIAEEWAPVSRNMTYEFKQKEPIQNKLGLPLVTVANDSNPWWTLLEVAILKAGGKLHKPEIFPAATDARYVRELGIPAFGFSPMANTPILLHDHNEFLNEAEYLKGIGVYEAIIESYASYVEASEDRESLSEL
D5A9K6______________IISEFQQYLRFPTAHPNPNYKPAQEFIVSKAKSIGLNTQLLEFAKGKPIILLTWTGKNPSWPSILLNSHLDSVPAEPEKWVHDPFQAIKDIKGNIYARGSQDDKCIGMQYLEAINRLKTKGYQPLRTVHVSFVPDEEIGGRDGAGAFVSSKEFKNLHVGFVLDEGQASPDENYRVFYADRIPWNLIIRATGAPGHGSKLYDNSALENLMRSMDAITRFRSAQFDLVKAGLAEPGEVIAVNPVYVKAGTPTPTGFIMNLQPSEAAAGFDIRLPPTADPQLVRKRISEEWAPAARNMTYQILEKGPIWDTQGRPLLTVANDSNPWWLLFEQAIMATGGKLRKPEILASTTDARFVREQGIPAFGFSPMANTPILLHDHNEFLNEGEYLKGIKVYAAIIESLSSFIESDHSIASKDEL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
689		20		80	0.995493
744	71	28			1.0
886	15		84		0.999986
1175	87		12		0.992554
1253	75	25			0.996473
1298	25		75		0.996473
1630	90	10			0.90298
1768		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain