SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5572

Length: 1705 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5572

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG0666 FOG: Ankyrin repeat	-	-	2.0e-16	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Putative RING zinc finger ankyrin protein	-	-	2.807e-08	-

Source	Gene names
Sma3	At2g28840; At2g28840/F8N16.13; GSVIVT00021308001; GSVIVT00024344001; LOC_Os03g16780; Os01g0974400; Os03g0275300; Os05g0112000; OsI_05417; OsI_10950; OsI_18173; OsJ_04951; OsJ_10322; OsJ_16866; P0016H04.16; P0459B04.9; POPTRDRAFT_558084; POPTRDRAFT_815354;

Source	GOs	Term	Type	Identity
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	ligase activity	GO:0016874	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Ankyrin repeat	IPR002110	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002299878.1	predicted protein [Populus trichocarpa]	0.0	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN39

Fln msg: your sequence is longer than subject: 459 - 247

Fln protein: MGLVVSCGNLGGELLSDAIRAGDIDLVKKLIEKDPGLLNKPLNAYQRLSSLHIAALYGRAHVMQVLLEAGAEPSVCGTKARTPLMVACKRGKATCVELLVRSGANVLAFEASNGRTCLHYAARGGHYECVERIIDATRTGPVAESWGFIRFVNVRDAIGTTPLHMAARAGKASICRLLLDNGAFVSATTSTFGFGPKHGSTTLHSAAKGGSVEVIHELLAWGADRTQKDLMGRTPYEVAVKYNNMVCAAILNPNVAEPMVWPSPWKFISNLEPQTKSILQAALVEANREREKGFPVVTNQKEDVEWNSRSVSERFKNEHQEEPIETGGIGAMEICCICFEKFCTIEVKDCGHQMCASCTLELCCHNKPNPLIPYSHPPACPFCRGTIGQLVLAEPKHMEIKDKDMMELAKSRSKRFKKQSWGSISKCSTGSGGGSRGSFRILGKGSGRIVDAEWMTHL*

Protein Length: 460

Fln nts: ATGGGGGACTGAGGGGACAATAATGGCGTTTTAAACAATATTGAAATGCTGATTAGGCCCTAATTTAATAGAAAGAAGGCCACTTCCTTTCGTGATGCTCTCCAATTTTAGAGGGGTGAATAAATAAATACTTCGAGATTTGACACGAAAGGTTGCTGAGAACCCGGGTCCCATCGGCAATGCAATGAGTTTCAGTGTCAACTTCTATATCTGTTAGTACTGTTCTGAGAAGGAACGGAGGGGATCTCTC_-_ATGGGGCTGGTGGTTAGCTGTGGGAATTTAGGAGGGGAGCTCTTGTCCGATGCGATCAGGGCGGGAGACATTGATTTGGTGAAAAAACTGATAGAAAAGGATCCAGGCTTACTCAACAAACCTCTCAACGCTTACCAGCGGCTCAGCTCCCTGCACATTGCTGCCCTATATGGCCGCGCTCATGTTATGCAAGTTCTGCTGGAGGCAGGGGCCGAGCCCAGTGTGTGTGGCACCAAAGCAAGGACTCCATTGATGGTAGCTTGCAAGCGAGGGAAAGCAACATGCGTTGAACTTTTGGTTCGATCTGGAGCAAACGTGCTGGCATTTGAAGCATCTAATGGAAGAACTTGTCTGCATTACGCCGCGAGAGGAGGCCACTATGAATGCGTTGAAAGAATCATAGATGCTACACGGACAGGACCAGTTGCCGAGTCTTGGGGATTTATCCGCTTTGTTAATGTAAGAGATGCTATTGGAACAACCCCTCTTCATATGGCTGCCCGAGCAGGGAAGGCTAGTATCTGTCGTTTGCTGTTGGATAATGGGGCATTTGTCTCAGCAACCACTTCCACATTTGGTTTTGGGCCAAAGCATGGAAGCACAACTCTTCATAGCGCAGCTAAAGGAGGATCTGTAGAAGTAATCCACGAGTTGCTCGCATGGGGAGCTGACCGCACGCAGAAGGACCTTATGGGGCGTACTCCATACGAAGTAGCAGTGAAGTACAACAACATGGTATGTGCAGCCATTTTGAACCCCAATGTAGCAGAGCCCATGGTGTGGCCATCTCCCTGGAAATTCATTAGCAATTTAGAACCCCAAACCAAGTCGATATTGCAAGCTGCTCTTGTTGAAGCTAATCGGGAAAGGGAGAAGGGTTTTCCTGTTGTCACCAATCAGAAAGAAGATGTAGAATGGAATTCTCGGTCAGTCTCTGAGAGATTTAAGAATGAGCATCAGGAAGAGCCCATAGAGACTGGAGGAATAGGTGCAATGGAAATATGCTGTATCTGCTTTGAGAAGTTCTGCACTATTGAAGTGAAGGACTGTGGACATCAAATGTGTGCATCTTGCACTCTGGAGCTGTGTTGTCACAACAAGCCCAATCCATTGATTCCTTATTCTCATCCGCCTGCCTGCCCTTTCTGTCGGGGTACCATCGGACAGCTGGTTTTGGCAGAGCCCAAACACATGGAAATCAAGGATAAAGACATGATGGAGTTGGCTAAGAGCAGGTCCAAGAGATTCAAGAAGCAAAGCTGGGGTAGCATTAGCAAGTGCTCTACTGGCTCTGGAGGAGGAAGCAGAGGGTCGTTCCGAATCTTAGGGAAAGGATCAGGAAGAATTGTAGATGCAGAGTGGATGACTCACTTATAA___TTCATTCCTCTAACATGAAATCTGATATTCTCCTCTTTTGCAGCTGTCACCAGCCCAAAGAGATGCAGCAAACAGACA

Fln Alignment:

Contig5572___LGGELLSDAIRAGDIDLVKKLIEKDPGLLN-KPLNAYQRLSSLHIAALYGRAHVMQVLLEAGAEPSVCGT-----KARTPLMVACKRGKATCVELLVRSGANVLAFEASNGRTCLHYAARGGHYECVERIIDATRTGPVAESWGFIRFVNVRDAIGTTPLHMAARAGKASICRLLLDNGAFVSATTSTFGFGPKHGSTTLHSAAKGGSVEVIHELLAWGADRTQKDLMGRT
A9NN39______________INDEDLFRAAEAGDSGVFEKLSRNEVDLNRARSIRNEDARSVLHVAAAAGHHQVVRIL--AGLDPSVSGVNNGDEEGWTPLHSAVSSGHANVVEALLQAGADV-SVANNGGRTALHYAASKGRVKIAQDLISNGAN------------IRKKDKFGCTPLHRAASAGHPEICELLIEEGADVDATDKT-------GQTPLMNAVISNDKQIALLLVRHGADVDCEDNEGYT

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
539		33		66	0.997452
813	85		14		0.993533
868	12	87			0.992554
1101	11		88		0.923564
1130	20			80	0.995493
1131		20		80	0.995493
1140	25		75		0.996473
1144		75		25	0.996473
1145		75		25	0.996473
1247	33		66		0.997452
1317	12		87		0.992554
1363		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain