SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5540

Length: 1879 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5540

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative 1,3-beta glucanase [Oryza sativa Japonica Group] dbj\|BAD10703.1\| putative 1,3-beta glucanase [Oryza sativa Japonica Group]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002306319.1	predicted protein, partial [Populus trichocarpa]	0.0	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKR6

Fln msg:

Fln protein: MAHSMLRLQLILLGVFFFLALCSGAQKYRSVNLGGWLVVEQWIKPSLFDGVQDRDLMDGAQIQLKSIKLGTYVVAEDGGGKNVAVNRGSPSGWETFKIWRVRDGTYQLRAFNKQFVRAVNAGGGSVDAVTNTPEEWETFQIIRNPSNKNQVHIKAYNGMYIQAQSQDQLTADFQGEPGWNDGNAATFEMNIVTGDNGIGGEYQLTNGLGPDKAPQVMNDHWNSFITESDFAFMSSNGINAVRIPVGWWIASDPNPPAPFVGGSLKALDNAFTWAKNHNIGVIVDLHAAPGSQNGDPHSGTRDGYLEWPDSQDNIDKSISVIDFLAGRYASNSALLGIELLNEPRAPGVPVDTLKTYYKRGYDTVRKHSSSAYVIMCNRIGPADAKELFDINNGLTNTVVDVHYYNLYDDSTFGSMSVQQNIDYINNNRAQILQSLTSANGPLIYVGEWTDEFEYRGASMSDYQRFGHAQLQVYGTATFGWGYWSLKNYNYNHWSFEWMVQNSYLQLQE*

Protein Length: 510

Fln nts: ATCAAATCCCCAGTTCGCTTGTTCCCTCTGAACATTTTAA_-_ATGGCACATTCCATGCTGCGTCTCCAGTTAATTTTATTAGGAGTTTTTTTCTTTCTTGCATTATGCTCCGGAGCCCAGAAGTACCGTTCTGTTAACTTGGGAGGGTGGCTCGTTGTTGAACAATGGATAAAGCCATCGTTATTTGATGGTGTCCAGGACAGGGATCTCATGGATGGAGCACAAATTCAACTTAAATCAATTAAGTTGGGTACCTACGTTGTTGCAGAAGATGGAGGCGGTAAAAACGTTGCAGTGAACAGAGGAAGTCCTTCTGGATGGGAGACTTTTAAGATATGGCGTGTGAGAGATGGTACCTACCAGCTCAGAGCCTTCAATAAACAATTTGTTCGAGCCGTTAATGCGGGAGGTGGAAGTGTGGATGCTGTGACTAACACACCCGAAGAGTGGGAAACATTTCAAATAATAAGAAATCCCTCAAACAAGAACCAAGTCCATATCAAAGCCTACAACGGAATGTACATTCAGGCTCAATCACAAGATCAATTGACTGCTGACTTCCAAGGTGAGCCTGGATGGAATGATGGCAATGCCGCAACATTCGAGATGAACATTGTAACTGGAGATAATGGCATAGGAGGCGAGTACCAGCTAACAAACGGCCTTGGACCTGACAAAGCTCCTCAAGTCATGAATGATCACTGGAACAGCTTCATTACCGAGAGTGACTTTGCATTCATGTCCAGTAACGGTATAAATGCTGTGAGAATTCCAGTTGGATGGTGGATTGCCAGTGACCCCAATCCTCCTGCTCCGTTTGTAGGAGGATCTCTGAAAGCTCTGGATAACGCATTCACATGGGCTAAGAATCATAACATAGGGGTAATTGTGGATCTCCATGCTGCTCCGGGTTCCCAAAACGGAGATCCACACAGCGGCACCAGAGATGGATATCTTGAGTGGCCTGATTCACAAGACAACATCGATAAAAGTATATCAGTAATCGACTTTCTCGCTGGCAGGTATGCTTCAAACTCAGCTCTCCTGGGAATTGAGTTGCTGAATGAACCCCGAGCACCCGGTGTACCCGTGGACACATTGAAAACATATTATAAAAGAGGTTATGACACCGTTCGAAAGCATTCGTCCTCTGCCTATGTGATAATGTGCAACAGAATTGGTCCTGCGGATGCTAAAGAGTTGTTTGATATCAACAATGGCTTAACAAACACTGTAGTTGATGTGCATTACTACAATCTCTATGATGATTCCACTTTCGGAAGCATGTCGGTTCAGCAAAATATTGACTATATCAATAACAACAGAGCTCAAATTTTGCAAAGCCTAACAAGTGCCAATGGTCCCCTCATCTATGTTGGAGAGTGGACAGATGAATTCGAATATCGAGGTGCATCAATGTCGGATTACCAGAGGTTCGGTCATGCGCAACTGCAAGTGTATGGAACTGCTACATTTGGATGGGGTTACTGGTCATTGAAAAACTATAATTACAACCATTGGAGTTTCGAGTGGATGGTGCAGAACAGCTATCTGCAATTGCAGGAATGA___ATTACAGATCTCAAGCGCAGTCGTCATATATTACTTTTATTAGTGTTATCTATCGAACGAAAGCGGCCCTGAAAGGCAGGCGTTGAATAAGTTCAACTGAAGGTTAGATGTAAGTTGGAACCATAAATGTTCATAGTTCCAACCAGCCTGTATGTCAGGACATAATTTCAATAGAGTGGATAATCAATATCAATGATATTGCAGTTGCTTTTGACATTGGAGTGACCTGTAAAGTAAGTTGAAACCATACATGTATATGCTTCAAAACAATTTTATCTCTGGGGTATAATTTTAATAAGGTGATTATCTTAG

Fln Alignment:

Contig5540___MAHSMLRLQLILLGVFFFLALCSGAQKYRSVNLGGWLVVEQWIKPSLFDGVQDRDLMDGAQIQLKSIKLGTYVVAEDGGGKNVAVNRGSPSGWETFKIWRVRDGTYQLRAFNKQFVRAVNAGGGSVDAVTNTPEEWETFQIIRNPSNKNQVHIKAYNGMYIQAQSQDQLTADFQGEPGWNDGNAATFEMNIVTGDNGIGGEYQLTNGLGPDKAPQVMNDHWNSFITESDFAFMSSNGINAVRIPVGWWIASDPNPPAPFVGGSLKALDNAFTWAKNHNIGVIVDLHAAPGSQNGDPHSGTRDGYLEWPDSQDNIDKSISVIDFLAGRYASNSALLGIELLNEPR------APGVPVDTLKTYYKRGYDTVRKHSSSAYVIMCNRIGPADAKELFDINNGLTNTVVDVHYYNLYDDSTFGSMSVQQNIDYINNNRAQILQSLTSANGPLIYVGEWTDEFEYRGASMSDYQRFGHAQLQVYGTATFGWGYWSLKNYNYNHWSFEWMVQNSYLQL
B8LKR6______________MAHSMLCLHLVLVVLLSFLALRSGAQKYRSVNLGGWLVVEGWIKPSLFDDVQDRDLMDGAQIQLKSVKLGNFVSAEDGGGKNLVVNRGSASGWETFRVWRVKDGTYQFRAFNKQFVRAVNAGGGIVDATADTPREWETFQIIRNPSNKNQVHIKAYNGMYIQAQSQDQLTADFQGEPGWNDGNAATFEMNIVTGDYGIGGEYQLTNGLGPDKAPQVMNDHWNSFITESDFEFMSSKGITAVRIPVGWWIASDPNPPAPFVGGSLKALDNAFTWAKNHNIGVIVDLHAVPGSQNGDAHSGTRDGYLEWPNSQDNIDKSISVIDFLAGRYASNSALLGIELLNEPRASTDPNAPGVPLDTLKTYYKRGYDTIRKHSPSAYVIMCNRIGPADAKELFDINNGLTRTVVDVHYYNLYDDSTFKSMSVQQNIDYINNNRAQILQSLTSANGPLIYVGEWTNEWEYQGASMSDYQRFGKAQLQVYGTATFGWSYWTLKNVQ-NHWSFEWMVQNNYLQL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1229	80		20		0.995493
1279	16		83		0.994512
1280	16		83		0.994512
1337		12		87	0.992554
1380	87	12			0.992554
1406	12		87		0.992554
1441	10	90			0.90298
1502	80			20	0.995493
1503		80	20		0.995493
1552		80		20	0.995493
1564			80	20	0.995493
1589		25	75		0.996473
1596		25		75	0.996473
1608	66		33		0.997452
1631	66	33			0.997452
1765	88	11			0.923564
1779		25		75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain