SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5510

Length: 1243 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene5510 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglycerate dehydrogenase-like protein [Oryza sativa Japonica Group] dbj\|BAD30579.1\| phosphoglycerate dehydrogenase-like protein [Oryza sativa Japonica Group]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein chr1:27167458-27169696 REVERSE LENGTH=373	56%
RefSeq	Arabidopsis thaliana	NP_177364.2	D-isomer specific 2-hydroxyacid dehydrogenase-like protein [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002327369.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRC1

Fln msg: STOP codon was not found. Distance to subject end: 1 aas,

Fln protein: MAENSNQTVGTITTRVLFCGLTFPSSFEYTKQYLLPYPFIQVDAMAFDKVPDVIANYDICVVRGMKLDANAISLARQMKLIVQFGVGLEGVDIEAATKFGIKVARIPGNTSGNSLSCAEHAIYLILGLLRDQKGMEKAFKERLLGVPTGETLYGKTVFIVGYGNIGKDLAIRLRPFGVKILATRRRWHSKSALDLSKQDAVDNYPMQSIDNGNIKDDLIDEKGGNECLYEFAKQADIVVICATLTSETVGMVNAKFLSSMKKGAFLVNVARGGLLDYEAVKASLECGHLGGLGTDVAWFEPFDPADPIIQHPKVLITPHVAGVTEVSYRNMAKVIGDCALHLNNGESFIGIEIVN

Protein Length: 356

Fln nts: TTTTGTTGTCAGGTGTCTCTTTTGGTTCGAGGATGAAAAGCTCCTTTAATATTTAAAATTGGCAACCCAAAACTTCACTTATATTTGAATTCGGGAAAATTAAATTCTGATAAATCCGTGAAGTTGAGACGACGGCTCTCACTCAACGCAGAGATTGATCAGAAGAGTGACGAAGC_-_ATGGCAGAAAACAGCAACCAAACTGTTGGTACAATTACAACACGGGTGCTTTTCTGTGGTCTCACCTTCCCTTCTAGCTTTGAATACACCAAACAATATTTACTTCCTTACCCCTTCATCCAGGTTGATGCTATGGCCTTTGACAAAGTTCCTGATGTTATTGCAAATTATGACATATGTGTAGTTCGAGGGATGAAGCTTGATGCAAATGCTATTTCTCTTGCAAGACAAATGAAGTTAATCGTACAGTTTGGTGTAGGACTGGAAGGTGTAGATATTGAGGCTGCCACAAAATTTGGGATCAAAGTTGCAAGGATCCCCGGTAACACCTCTGGAAATTCTTTATCGTGTGCAGAACATGCAATATATTTGATCCTGGGTCTTCTTCGTGACCAGAAAGGCATGGAGAAAGCATTCAAAGAGAGGCTGTTGGGTGTTCCTACTGGAGAAACACTGTATGGAAAAACGGTTTTTATTGTTGGATATGGAAATATTGGGAAGGACCTTGCAATTCGTTTGAGACCTTTCGGTGTTAAAATTCTTGCTACTAGACGACGTTGGCACTCAAAATCAGCTTTGGATTTGAGCAAACAAGATGCTGTTGATAATTATCCAATGCAAAGCATAGACAATGGAAACATCAAGGATGACCTGATTGATGAGAAAGGTGGAAATGAGTGCCTTTACGAATTTGCAAAGCAAGCGGACATAGTAGTTATTTGTGCCACATTGACTTCAGAGACTGTTGGCATGGTGAATGCAAAGTTTCTATCTTCAATGAAAAAGGGTGCATTTCTTGTCAATGTTGCTCGAGGAGGTCTCTTGGATTACGAAGCAGTCAAAGCTTCTCTGGAATGTGGTCACTTGGGAGGCTTGGGTACTGATGTTGCTTGGTTCGAACCATTTGATCCTGCAGATCCTATTATACAACATCCGAAAGTCTTGATAACACCTCATGTTGCCGGAGTTACAGAAGTTTCTTATAGAAACATGGCCAAGGTAATAGGTGATTGTGCTCTTCACCTTAATAATGGTGAATCCTTTATTGGCATAGAAATTGTTAATTG

Fln Alignment:

Contig5510___MAENSNQTVGTITTRVLFCGLTFPSSFEYTKQYLLPYPFIQVDAMAFDKVPDVIANYDICVVRGMKLDANAISLARQMKLIVQFGVGLEGVDIEAATKFGIKVARIPGNTSGNSLSCAEHAIYLILGLLRDQKGMEKAFKERLLGVPTGETLYGKTVFIVGYGNIGKDLAIRLRPFGVKILATRRRWHSKSALDLSKQDAVDNYPMQSIDNGNIKDDLIDEKGGNECLYEFAKQADIVVICATLTSETVGMVNAKFLSSMKKGAFLVNVARGGLLDYEAVKASLECGHLGGLGTDVAWFEPFDPADPIIQHPKVLITPHVAGVTEVSYRNMAKVIGDCALHLNNGESFIGIEIVN
B8LRC1______________MAENSSPTAGTITTRVLFCGLSFPTSFEYTKQYLLPYPFIQVDAIPHDKVPDIIGGYEICVVRGMKLDANVISLARQMKLIVQFGVGLEGVDIEAATKFGIKVARIPGNTSGNSLSCAEHAIYLILGLLRDQKGMEKAFKERMLGVPAGETLYGKTVHIVGYGNIGKDLAVRLRPFGVKILATRRCWHSKSTVDLNKQDAVYTYPTQSTGDGNIKDDLIDEKGGNECLYDFASRADIVVTCATMTSETVGMVNAKFLSLMKKGAFLVNVARGGLLDYEAVKASLESGHLGGLGADVAWFEPFDPADPILQHPKVFITPHVAGVTEFSYRNMAKIIGDCALHLHNGDSLVGVEIVN

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1094		12		87	0.992554
1100	50		50		1.0
1112		12		87	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain