SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5482

Length: 2197 nt

UniGene Fasta

>sp_v3.0_unigene5482
CGTCGTGACCTTGGCTGTCACTCATGGGGAGTTAACGCTGAGCCTCAGCAATTCTCGAAGCCGTTCTTGAGCCCCGAAAGCCAAAGCCCAAGCAAGATTCCAAGCCCAAAGTCTTGTGTTTATTTCAAAGTCTGAGAATGAAGGTCCGGTATGGATCCTGTATCGTATTATTGTTCTTTATCAGTTGTGTTTACTCTGCAGACGAAGATGTCGAAATGGATGGAAAGTGCGTGGAAGCAGATCTGGCGGCCCTGGTGAGCTTTAAATTTCACATCGTCGAAGACAAATCCGAGATCTTTAATTCATGGAGCGGTAACCATTGCTGCGCTGGCTGGGAAGGCGTAGAATGCGATTTCCAGAACGGGCGCGTCGTGAAGCTGGAGTTACAGAACCACGAATCGAGTAACGACACTATGTACATGCGCGGAACTCTGTCTCCTTCCCTGGGAAACCTCGCTTTCCTCCAAGTCCTGGTAATCAATGGATTCAAGGAGATCAAGGGATCGATTCCCGCCACGATCGGAAATCTTTCACATCTCAGGCAGCTTTATCTCGAGAACAATAAGCTCTCCGGCCTAATTCCTCCGTCCATCGGAAAATTATCGCTGCTCGAGACGCTTTCCCTCAACGGCAACCGTCTCAGCGGCCGAATTCCCGATTCCATGGGCAATCTGCAGCGCTTAATACAGCTCAATCTTGCCAAAAATCGCTTGTCAGGCACCATTCCGCCGTCGATAAAGAATCTCGGCAGCTTGCTGTTCTTGGATTTGAATGATAATCTTCTTTCCGGTCCCGTTCCGGCATTCTTAGGCTCGTTCAGAAATATAACATTTCTTGACCTGTCAACCAATGCTTTAACGGGCGCCATACCGGCGGCACTGGGAAATCTTTCCAGCGTCTTAGAGCTTTCCCTGGCAAGGAACCAGCTAACTGGCCCAGTTCCTTCATCGCTTGGACGTTTAAGTTCCCTCAGCAGTTTATCACTGAACGACAATTTCCTCCAAGGTACGATTCCCGAAGCTCTCTCTAACATCTCAAAGCTTTGGTACCTGAATCTTTCAAGAAACCTGTTCTCTGATCCCCTCCCGTCTTCTCTGGCAAATGCCTCGGCTCTCCTGAGCCTCGACCTTTCCTATAACAAGCTGAATCTTGGGCGCATTCCCGAATGGATTACGCGCAAAGAAATGTCCGACGTGCATTTGGCGGGCTGCGGTATCAGCGGGCGTCTGAGCGACTGGAAACCTACGGCGACCTCCATGTATTCTTCTATCGATTTCTCTGATAATAACCTAACCGGAGAAATAGGGGATATTTTCAAGAACATGTCTCAGCTAGAAAAAATCTTTCTGTCCAACAACTATCTGAAATCGAATCTCTCAGAGGCTTCGTTTCCGGAATTGATCGGCACGGTTGATCTGCACTCAAATCAGCTTTACGGATCCATTAAAAACATCTTGTACGATATCTCTGGTGCCTGTTCTTCCCCCGGCGGATGTCTTGATTTCTTGGATTTGTCCAACAATTTGATCTCCGGCAGCATACCAGAACTTGACGGAGAAAGAAGGGTGAAATGGATGGATCTGTCCAATAATATGCTCACCGGGAGCATTCCGGCTTCCATCTCGATGCTTACCTCTGTGAAGCATCTGGACATATCCAAAAATCATTTAGACGGCAAGTTGCCCCAGAGCTTAGGCCAGTTATCTGAACTGACATGGTTGGATTTGTCAAGAAATGGTTTCAGTGGAGGGCTCCCTGCAGAGATGTTGGGTTTGAAAAAATTGCAGCATGTAAATTTCAGATATAATCATTTGTGTGGTGAAATTCCTCAAGGGAAACCACTGAATATTTTTCCTGCTGCTGCATTTGCTCAGAACGACTGTCTCTGCGGATCGCCTCTTCCTGTGTGCAGGAAAGGGTGAACTAGTTTAGATCAGTTTCATGTTCATTTTGTTTGTCAGTTTTAGTGTCATAATTATTTATTTATTAAGACTCTGTTCTGCCTTAACTGTTTTTGTTTCTGGTCATTTAAAAATGTCTGATATTTCACAATCAAATCTGTCCATATCTAAGAGCCGATGAATCAAATAAAGAAACTGTCCACTGGATAAACCTCAGAACATCTTGAGGTCAATAAAATTGCAGAGATCAATTACAACGACAAGAACTAATAAAAGTCGACATCGATCGATTCTCT

Ace file of the UniGene sp_v3.0_unigene5482

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RGI4_RICCO	-	-	0.0	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%

Source	Gene names
Sma3	At5g23400; GSVIVT00002591001; POPTRDRAFT_803041; RCOM_1454170;

Source	GOs	Term	Type	e value	Identity
Sma3	cell wall	GO:0005618	Cellular Component	0.0	-
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G23400.1	Leucine-rich repeat (LRR) family protein chr5:7880603-7882372 FORWARD LENGTH=589	46%
RefSeq	Arabidopsis thaliana	NP_197731.1	leucine-rich repeat-containing protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002310361.1	predicted protein [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS28

Fln msg: W1: There is no M at the beginning,

Fln protein: ASAILEAVLEPRKPKPKQDSKPKVLCLFQSLRMKVRYGSCIVLLFFISCVYSADEDVEMDGKCVEADLAALVSFKFHIVEDKSEIFNSWSGNHCCAGWEGVECDFQNGRVVKLELQNHESSNDTMYMRGTLSPSLGNLAFLQVLVINGFKEIKGSIPATIGNLSHLRQLYLENNKLSGLIPPSIGKLSLLETLSLNGNRLSGRIPDSMGNLQRLIQLNLAKNRLSGTIPPSIKNLGSLLFLDLNDNLLSGPVPAFLGSFRNITFLDLSTNALTGAIPAALGNLSSVLELSLARNQLTGPVPSSLGRLSSLSSLSLNDNFLQGTIPEALSNISKLWYLNLSRNLFSDPLPSSLANASALLSLDLSYNKLNLGRIPEWITRKEMSDVHLAGCGISGRLSDWKPTATSMYSSIDFSDNNLTGEIGDIFKNMSQLEKIFLSNNYLKSNLSEASFPELIGTVDLHSNQLYGSIKNILYDISGACSSPGGCLDFLDLSNNLISGSIPELDGERRVKWMDLSNNMLTGSIPASISMLTSVKHLDISKNHLDGKLPQSLGQLSELTWLDLSRNGFSGGLPAEMLGLKKLQHVNFRYNHLCGEIPQGKPLNIFPAAAFAQNDCLCGSPLPVCRKG*

Protein Length: 628

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGGAGTTAACGCTGAGCCTCAGCAATTCTCGAAGCCGTTCTTGAGCCCCGAAAGCCAAAGCCCAAGCAAGATTCCAAGCCCAAAGTCTTGTGTTTATTTCAAAGTCTGAGAATGAAGGTCCGGTATGGATCCTGTATCGTATTATTGTTCTTTATCAGTTGTGTTTACTCTGCAGACGAAGATGTCGAAATGGATGGAAAGTGCGTGGAAGCAGATCTGGCGGCCCTGGTGAGCTTTAAATTTCACATCGTCGAAGACAAATCCGAGATCTTTAATTCATGGAGCGGTAACCATTGCTGCGCTGGCTGGGAAGGCGTAGAATGCGATTTCCAGAACGGGCGCGTCGTGAAGCTGGAGTTACAGAACCACGAATCGAGTAACGACACTATGTACATGCGCGGAACTCTGTCTCCTTCCCTGGGAAACCTCGCTTTCCTCCAAGTCCTGGTAATCAATGGATTCAAGGAGATCAAGGGATCGATTCCCGCCACGATCGGAAATCTTTCACATCTCAGGCAGCTTTATCTCGAGAACAATAAGCTCTCCGGCCTAATTCCTCCGTCCATCGGAAAATTATCGCTGCTCGAGACGCTTTCCCTCAACGGCAACCGTCTCAGCGGCCGAATTCCCGATTCCATGGGCAATCTGCAGCGCTTAATACAGCTCAATCTTGCCAAAAATCGCTTGTCAGGCACCATTCCGCCGTCGATAAAGAATCTCGGCAGCTTGCTGTTCTTGGATTTGAATGATAATCTTCTTTCCGGTCCCGTTCCGGCATTCTTAGGCTCGTTCAGAAATATAACATTTCTTGACCTGTCAACCAATGCTTTAACGGGCGCCATACCGGCGGCACTGGGAAATCTTTCCAGCGTCTTAGAGCTTTCCCTGGCAAGGAACCAGCTAACTGGCCCAGTTCCTTCATCGCTTGGACGTTTAAGTTCCCTCAGCAGTTTATCACTGAACGACAATTTCCTCCAAGGTACGATTCCCGAAGCTCTCTCTAACATCTCAAAGCTTTGGTACCTGAATCTTTCAAGAAACCTGTTCTCTGATCCCCTCCCGTCTTCTCTGGCAAATGCCTCGGCTCTCCTGAGCCTCGACCTTTCCTATAACAAGCTGAATCTTGGGCGCATTCCCGAATGGATTACGCGCAAAGAAATGTCCGACGTGCATTTGGCGGGCTGCGGTATCAGCGGGCGTCTGAGCGACTGGAAACCTACGGCGACCTCCATGTATTCTTCTATCGATTTCTCTGATAATAACCTAACCGGAGAAATAGGGGATATTTTCAAGAACATGTCTCAGCTAGAAAAAATCTTTCTGTCCAACAACTATCTGAAATCGAATCTCTCAGAGGCTTCGTTTCCGGAATTGATCGGCACGGTTGATCTGCACTCAAATCAGCTTTACGGATCCATTAAAAACATCTTGTACGATATCTCTGGTGCCTGTTCTTCCCCCGGCGGATGTCTTGATTTCTTGGATTTGTCCAACAATTTGATCTCCGGCAGCATACCAGAACTTGACGGAGAAAGAAGGGTGAAATGGATGGATCTGTCCAATAATATGCTCACCGGGAGCATTCCGGCTTCCATCTCGATGCTTACCTCTGTGAAGCATCTGGACATATCCAAAAATCATTTAGACGGCAAGTTGCCCCAGAGCTTAGGCCAGTTATCTGAACTGACATGGTTGGATTTGTCAAGAAATGGTTTCAGTGGAGGGCTCCCTGCAGAGATGTTGGGTTTGAAAAAATTGCAGCATGTAAATTTCAGATATAATCATTTGTGTGGTGAAATTCCTCAAGGGAAACCACTGAATATTTTTCCTGCTGCTGCATTTGCTCAGAACGACTGTCTCTGCGGATCGCCTCTTCCTGTGTGCAGGAAAGGGTGA___ACTAGTTTAGATCAGTTTCATGTTCATTTTGTTTGTCAGTTTTAGTGTCATAATTATTTATTTATTAAGACTCTGTTCTGCCTTAACTGTTTTTGTTTCTGGTCATTTAAAAATGTCTGATATTTCACAATCAAATCTGTCCATATCTAAGAGCCGATGAATCAAATAAAGAAACTGTCCACTGGATAAACCTCAGAACATCTTGAGGTCAATAAAATTGCAGAGATCAATTACAACGACAAGAACTAATAAAAGTCGACATCGATCGATTCTCT

Fln Alignment:

Contig5482___PKVLCL-FQSLRMKVRYGSCIVLLFF-ISCVYSADEDVEMDGKCVEADLAALVSFKFHIVEDKSEIFNSWS-GNHCCAG-WEGVECDFQNGRVVKLELQNHESSNDTMYMRGTLSPSLGNLAFLQVLVINGFKEIKGSIPATIGNLSHLRQLYLENNKLSGLIPPSIGKLSLLETLSLNGNRLSGRIPDSMGNLQRLIQLNLAKNRLSGTIPPSIKNXXXXXXXXXXXXXXXXPVPAFLGSFRNITFLDLSTNALTGAIPAALGNLSSVLELSLARNQLTGPVPXXXXXXXXXXXXXXNDNFLQGTIPEALSNISKLWYLNLSRNLFXXXXXXXXXXXXXXXXXXXXYNKLNLGRIPEWITRKEMSDVHLAGCGISGRLSDWKPTA-TSMYSSIDFSDNNLTGEIGDIFKNMSQLEKIFLSNNYLKSNLSEASFPELIGTVDLHSNQLYGSIKNILYD-ISGACSSPGGCLDFLDLSNNLISGSIPELDGERRVKWMDLSNNMLTGSIPASISMLTSVKHLDISKNHLDGKLPQSLGQLSELTWLDLSRNGFSGGLPAEMLGLKKLQHVNFRYNHLCGEIPQGKPLNIFPAAAFAQNDCLCGSPLPVC
B8LS28______________PGVICICFQ------KHGAILLLLVLSLAAVITSGDDENPGATCFLKDKEALLSFKAAIPEDTTGTLITWTPGTDCCGGGWAGIQCDARSGRVTQLVLQNPEETNDTMYMRGTVSPSLGNLKSLQILIISGLKHITGTIPGSLSDLSWLTQLYIENNRVTGPVPRVLGSLSRLQALSFTGNSLSGPIPLELGELQSLIQLNLGKNRLTGVLPTTLKNIRGLQSLDINGNILSGPIPAFLGSFVNLTYLDLSGNEFTGPIPASIADLSSIQDLSLSRNRLTGEIPYSLGRMNSLSSLSLSENMLVGVIPESISKMSNLWNLNLSKNHLSDPLPSGLAKASALVRLDLSYNNLHLGRIPDWITKKEMTNLHLAGCGVRQCLSTWKPRAMNSLLSSIDLSNNNLTGDISQLLKNMTSLQRVYLSNNSLTTNLSEVSLPDSISVLDLHSNKLYGSIEKLFYDNISESCPSPGGCLEFINLANNEITGRIPEIDGERSIKWLDLSGNRLKGSVPTSISMLKKIERLDFSRNRMVGKIPGAMGELKELRWLDLSWNGLKGRIPGQILGLKHLKHMNLRNNRLCGEIPQGKPLNVFPASAYAHNDCLCGSPLPRC

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
560	10	89			0.999919
561	89			10	0.999919
562	84		15		1.0
564	89			10	0.999919
587	11		88		0.999937
719		87		12	0.992554
935		85	14		0.993533
942		85	14		0.993533
945			14	85	0.993533
946		85	14		0.993533
947	85			14	0.993533
1129		11		88	0.923564
1181	90		10		0.90298
1489			80	20	0.995493
2030		33		66	0.997452
2102		10		90	0.90298
2119	90		10		0.90298
2198	12	87			0.992554
2199	16			83	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1976	1988	TTAT TTAT TTAT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain