SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5429

Length: 1971 nt

UniGene Fasta

>sp_v3.0_unigene5429
GAAAAATGAATATTCCACCTTCTAAATGGATAATCCACCCTTGGGGAAGAAAAAAAGAATAGGCCAAATTACCAAGATAGTAAAGCCTTGTCTTTATTCAGTTTGGACATTGAAATCTTCAGCGTATGTGAAAGGACACGGCAGACAATGACCTGGCAGCGGCGTCCATAGTTTGGCGATTTACAGGAAAACCTCTGGAATTGTTTGGTAATTGCTATCCATATACGGGGAATTCCAGAAACCGCAGTTACTAAATTGAAAATCGCTTTTGTGGTTCGAAAACCATTGAGGATTCGAATGAAGCCGGGAACCCAAAAATCATATACTATCTTAGGTAGCTTAATGGTGTGTTAAAATTAAACGGAATTGTATGGAGTGCACGCACACCTGTTCTGCGCTAACGCCCATTCGAGGGCCGTCACAGTTTCGAATCACAACGCCGCCGCGGCAGCTTAAAATTCCTGGGTCAAGAAAAGCGTGGGGGCGCAAACGTGTGGTGGTGTGCAATAAGACGCCCAGCTTCAATGAAAACGATTCCAATGGCACCTTCCCAACATCAAAAAATCTCTTCATGCAAGAGGCTATTGGAGCTGAGCATGGAGAGGCTTTTGAAGCTTATAGACCAAATGGACCATTAAAAGTTGATGTGGATTTCCTAAATGACCGAATGCGTGAAAGTGGCCTTCAAAGAATACGATATGCTATGAAACCTGATGAAGCATTTGGTCTTATTTTTTCCTGGGACAATGTTGTGGCAGATACTCGGACTCTCAGGATATATGCTTGGAATCAACTTGCTTCTGAAGAAGGTAAAACCATTCCGAAAGATGGTGAGACGCAACGTTTGATGCTTTCTGCTGGTGCTGAGTATGTCTTATGTAAGATTCTTTGCTGGGGAGAAGCTGGAAATGAAGCCGAGAGGCTGAAAATGCGTCTGTCAGAAATTTTCTACGAGGAATTATTAAAATTACAAGCACCCATGGAGGGATTAAAGGAGTGGCTGGAAGCACTTTATACGGCTGGTGTGCCATGTGCAGTTGCATCATCCTTAGATCGCTACAATCTACTTGCAGCTCTTCAAAGAATGGGACTTCGAAAATATTTTCAGGCTATAGTGTCAGACGAAGATGGAATGGAGTCAATTGCACAAAGATTTCTTTCCGCTGCTGTAAAGTTAGATCGACCACCATCCAAATGTGTTGTTTTTGAAGACGATCCTAGAGGCATCACAGCTGCACACAACTGCACAATGATGGCAGTTGCTTTGATTGGTTCTCATCCTGCATATGAACTAGTGCAGGCCGATCTTGCTGTAGCCAACTTTAGCGAACTTTCTGTCATCAACTTGCGGAGATTATTTGCAAATAAAGGTTGTGAATTCATGGATTTACAAAAGCAAAATGTTGAGGAAAGCCCAACCAAGAAAAAGCTCATCATTGACACACTTTTTTAGGATATCAAGGACTTGATGCGACATGGAAGTCGGCTTCACTGAAAATTTTAAGTAGACTGTGCATGCCATTTTGCAGTCACATTGGTAAGAGCATGGTCAGATGAAAAGTAAAGTGGTCCTGTTAAGTTCTTTCTATCTATGTTTACCCACAACACAGGATGGAAGTTTCAGAACTCCATCCACATTGCTTGGCCTCTCTAGAAATGAAGAGTGTCAGTAGCATGGAAAAATCCATTTTAGAGATTTGTTGGAACTGGTTTTTATCATCTGGTGAGGGCTGCGGAATCAATTTCATCTTCCTTTGATTCATATTGCTGCTGATCCCTAACCTATATTATCTGTTTTGTTTGCTGAGCATTGTACAATCTAGCAGGTCTGGTGTAAAACTGTAATATTGGTTTACTATTAAAATTCCGAACTTGTTCCATATACTGGACTGTTAACTTTCACTTGAAAGAATATGTACATCAATTAAGCTTCGAAGCTTCATAATGGATAGTGAAACTTCTTGTTACAAA

Ace file of the UniGene sp_v3.0_unigene5429

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	2-deoxyglucose-6-phosphate phosphatase, putative n=1 Tax=Ricinus communis RepID=B9S4C2_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10970.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein chr3:3433276-3436077 REVERSE LENGTH=365	66%
RefSeq	Arabidopsis thaliana	NP_566385.1	haloacid dehalogenase-like hydrolase [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002325812.1	predicted protein [Populus trichocarpa]	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVF8

Fln msg:

Fln protein: MECTHTCSALTPIRGPSQFRITTPPRQLKIPGSRKAWGRKRVVVCNKTPSFNENDSNGTFPTSKNLFMQEAIGAEHGEAFEAYRPNGPLKVDVDFLNDRMRESGLQRIRYAMKPDEAFGLIFSWDNVVADTRTLRIYAWNQLASEEGKTIPKDGETQRLMLSAGAEYVLCKILCWGEAGNEAERLKMRLSEIFYEELLKLQAPMEGLKEWLEALYTAGVPCAVASSLDRYNLLAALQRMGLRKYFQAIVSDEDGMESIAQRFLSAAVKLDRPPSKCVVFEDDPRGITAAHNCTMMAVALIGSHPAYELVQADLAVANFSELSVINLRRLFANKGCEFMDLQKQNVEESPTKKKLIIDTLF*

Protein Length: 362

Fln nts: GAAAAATGAATATTCCACCTTCTAAATGGATAATCCACCCTTGGGGAAGAAAAAAAGAATAGGCCAAATTACCAAGATAGTAAAGCCTTGTCTTTATTCAGTTTGGACATTGAAATCTTCAGCGTATGTGAAAGGACACGGCAGACAATGACCTGGCAGCGGCGTCCATAGTTTGGCGATTTACAGGAAAACCTCTGGAATTGTTTGGTAATTGCTATCCATATACGGGGAATTCCAGAAACCGCAGTTACTAAATTGAAAATCGCTTTTGTGGTTCGAAAACCATTGAGGATTCGAATGAAGCCGGGAACCCAAAAATCATATACTATCTTAGGTAGCTTAATGGTGTGTTAAAATTAAACGGAATTGT_-_ATGGAGTGCACGCACACCTGTTCTGCGCTAACGCCCATTCGAGGGCCGTCACAGTTTCGAATCACAACGCCGCCGCGGCAGCTTAAAATTCCTGGGTCAAGAAAAGCGTGGGGGCGCAAACGTGTGGTGGTGTGCAATAAGACGCCCAGCTTCAATGAAAACGATTCCAATGGCACCTTCCCAACATCAAAAAATCTCTTCATGCAAGAGGCTATTGGAGCTGAGCATGGAGAGGCTTTTGAAGCTTATAGACCAAATGGACCATTAAAAGTTGATGTGGATTTCCTAAATGACCGAATGCGTGAAAGTGGCCTTCAAAGAATACGATATGCTATGAAACCTGATGAAGCATTTGGTCTTATTTTTTCCTGGGACAATGTTGTGGCAGATACTCGGACTCTCAGGATATATGCTTGGAATCAACTTGCTTCTGAAGAAGGTAAAACCATTCCGAAAGATGGTGAGACGCAACGTTTGATGCTTTCTGCTGGTGCTGAGTATGTCTTATGTAAGATTCTTTGCTGGGGAGAAGCTGGAAATGAAGCCGAGAGGCTGAAAATGCGTCTGTCAGAAATTTTCTACGAGGAATTATTAAAATTACAAGCACCCATGGAGGGATTAAAGGAGTGGCTGGAAGCACTTTATACGGCTGGTGTGCCATGTGCAGTTGCATCATCCTTAGATCGCTACAATCTACTTGCAGCTCTTCAAAGAATGGGACTTCGAAAATATTTTCAGGCTATAGTGTCAGACGAAGATGGAATGGAGTCAATTGCACAAAGATTTCTTTCCGCTGCTGTAAAGTTAGATCGACCACCATCCAAATGTGTTGTTTTTGAAGACGATCCTAGAGGCATCACAGCTGCACACAACTGCACAATGATGGCAGTTGCTTTGATTGGTTCTCATCCTGCATATGAACTAGTGCAGGCCGATCTTGCTGTAGCCAACTTTAGCGAACTTTCTGTCATCAACTTGCGGAGATTATTTGCAAATAAAGGTTGTGAATTCATGGATTTACAAAAGCAAAATGTTGAGGAAAGCCCAACCAAGAAAAAGCTCATCATTGACACACTTTTTTAG___GATATCAAGGACTTGATGCGACATGGAAGTCGGCTTCACTGAAAATTTTAAGTAGACTGTGCATGCCATTTTGCAGTCACATTGGTAAGAGCATGGTCAGATGAAAAGTAAAGTGGTCCTGTTAAGTTCTTTCTATCTATGTTTACCCACAACACAGGATGGAAGTTTCAGAACTCCATCCACATTGCTTGGCCTCTCTAGAAATGAAGAGTGTCAGTAGCATGGAAAAATCCATTTTAGAGATTTGTTGGAACTGGTTTTTATCATCTGGTGAGGGCTGCGGAATCAATTTCATCTTCCTTTGATTCATATTGCTGCTGATCCCTAACCTATATTATCTGTTTTGTTTGCTGAGCATTGTACAATCTAGCAGGTCTGGTGTAAAACTGTAATATTGGTTTACTATTAAAATTCCGAACTTGTTCCATATACTGGACTGTTAACTTTCACTTGAAAGAATATGTACATCAATTAAGCTTCGAAGCTTCATAATGGATAGTGAAACTTCTTGTTACAAA

Fln Alignment:

Contig5429___MECTHTCSALTPIRGPSQFRITTPPRQLKIPGSRKAWGRKRVVVCNKTPSFNENDSNGTFPTSKNLFMQEAIGAEHGEAFEAYRPNGPLKVDVDFLNDRMRESGLQRIRYAMKPDEAFGLIFSWDNVVADTRTLRIYAWNQLASEEGKTIPKDGETQRLMLSAGAEYVLCKILCWGEAGNEAERLKMRLSEIFYEELLKLQAPMEGLKEWLEALYTAGVPCAVASSLDRYNLLAALQRMGLRKYFQAIVSDEDGMESIAQRFLSAAVKLDRPPSKCVVFEDDPRGITAAHNCTMMAVALIGSHPAYELVQADLAVANFSELSVINLRRLFANKGCEFMDLQKQNVEESPTKKKLIIDTLF
A9NVF8______________MECTHSCSALTPTRGPSQFRITTPPRQLKIPGLRKAWGRKRVVVRNKAPSSNEHDSNGAYPTSKNLFMQEAIGAEHGEAFEAYRPNGPLKVDVDFLNDRMRESGLQRIRYAMKPDEAFGLIFSWDNVVADTRTLRIDAWNQLASEEGKTIPKDGETQRWMLSAGAEYVLCKILCWGEAGNEVERLKMRLSEIFYEELLKLQAPMDGLKEWLEALYTAGVPCAVASSLDRQNLLAALQRMGLRKYFQAIVSDEDGMESIAQRFLSAAVKLDRPPSKCVVFEDDPRGITAAHNCTMMAVALIGSHPAYELVQADLAVASFNELSVINLRRLFANKGCEFMDLQKQNVEESPSKKKLIIDTLF

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1183	30	69			1.0
1305	22	77			1.0
1415	16		83		0.994512
1417	16	83			0.994512
1418		83		16	0.994512
1419	83			16	0.994512
1521		88		11	0.923564
1956	7		69		1.0
1969		11		88	0.923564
1970	62	12			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain