SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5385

Length: 2351 nt

UniGene Fasta

>sp_v3.0_unigene5385
CGTCGTGACCTTGGCTGTCACTCATTGGCCTCCTTCAACTCCAACAAGAAACTCCAAAACGTGAGTAAAACACACACCAAATGTCATGTCAAAAATAAGTAATATCTCGCAATCATTTCAAAACTACACCGCAAAACTCGTCAAGTTTGGAGTTGAAGAAGATCGAGACAGGACAAATTGGGTTACCTGTCATTTCCTCAATGTCTGCAACTTTTATCTCTCGCAAATAGAGGTATTCAATGCACAGCCTGCAGCCATCACTTTTCAGATTTTTCCTCATTCGTGGCCGAAGGCGGTTATCTGCTGTGGCTCCAGACAAATTTGCAAACAGCATTATTCAGGTTTTTCCTCATTCGTGGCCGAAGGCGGTTATCTTCTGTAGCTCCAGACCAAGCTGATCAACAGTGGGCTTTACATCTGGTACTGAGAGGTATCTTCTCTGTTAACCCCTATCACATAAAATTGTATTCTAAAAAACTTTATGAATGATTGTTATTTTTTCTTCTGCAACCTATAAAACCCTACGTAGGCCGTTCCCAAAATACCCAACTGGCTTGCGCCGATTTTTTCATCCCAAACACCCTTAGACCGCCTGCATTGAGTTGGGTTTCAGTCAAAATTGCCTCATGGCCATGGAAGTTGATGGGTTTTGCGAGCAACATGGGGGATCCCTTGAGTTAGATTGGAACCGCTTGAATTCTGATATCACCGAGGTTGTACTTGCTCGGCTGCCAGTCAGCTCCATTGTTCGCTCGTGTATCGTCTGCAAGCACTGGTATTCTCTCATAACCCAGCCCTCGTTTACAGCCAGGCTTAGGGTTTGCAAGAAACCCTGGTTTTTCCTGTATGGCCAAAACAACATTTTCTTGAAGAATAACCAGGCATTTGGCTTTGATCCAGAGGCCAATGAATGGATCCGTTTGCCTACTTCATCGTTTCCCCAGCCCTGTGCTGAGGATTCCTTGGCAGGTTCAGGAGGGTTTCTGTTTGCCACCACTGGGACTGCCTGTTCTAGGTTCTGTTATGCCCCGGTGTTGAAGAGTTCATGGAAGGTAACTGCCCCGCTAAGGTTCTCCAGGCGCCAGCCTCTGGTGGGAGTGTTTAAGGAGGGCCATTATGGGTTCATTGTAGTTGGGGGTGTCAGATTCATTGGGGGGCTGGTTGATATCGAGGATAGATTGGCTGTTGAAATCTACGACTCTAGCAAAGATTCATGGGAACTCTGTGCCCCTTTGCCAGCGGATTTCCGATCCGGTAACTCCTCGCAGTGGCTGACTTCTGCATTGCTGAAAGGGAAATTCTATGTCTTCGGGATCTATTCAGGGTATATTTCAGCGTTCGATCTGCAGCACAAGGCATGGGGTGGTGTCCAGATTGTTCGCCCCCCGGGGATTATATTCTCATTTCTTCTGGCTTGCCAGAACAACCTTATCTTGGCTGGTTTGCGCAATGGCGCCGATGGGCCGATGTTTAATCTCTGGAAAGTCGAGGAAGAATCGATGGCGTTCTGTGAGGTTGGTTCCATGCCCCAGGAGCTTCTGTATTCTTTGTTTGATAGTGAGGAGGATGATAAATTTGCAAGCTTAAAGTGTGTGGGGCTTGGGAGTCTCATTTATGTCTTCAATGAAGAACATCACAAGATGTATCCTGCTTGTGTCTGTGACATTTCTCCGAAATTGGATTGCACCTGGACAAAAGTTCCTCCGTTGCCTTTCCCTGTAAATAGGTTCCACAAGGTTATCAGCTTCTGTTCCACAGTTGCACTTGATAGCATTCTTTGATTCGAGATGTCACACCATTGGTTGCATGCCTTACATATTGTTGGTTCCAGTCATATGGAGTCATGTAAAACCCTTTATACATGCCTGGTGAGTGTGGCTAACATCAAGGATCGGTAGAAGAATTTGCAGTTCTATTTTATTGGCTTGCTTTACTTATCTACATTTGCGGAGCAACTTGCAAATCGGACAATGGGTTTTCGGGTGTGTACAGTGGCCAGCTATCATATGTAAAATTCCTGTTTGTTGCGGTTGTCTAAATTTATTTCTTGGGGTCTGTATAAAATGGGTGATGAGGGGCTGAGTTTATTAATCCGCTCCTCATTTACTCTTAGAAGTCTATGATTTGATTAGGGTTGGTTCTATGCTTCACAAAGAAGAATCCATGATAAGTTATTTTAATAGATTTTATAATTTTCAAGCAGGTGAACTTATAGCTTGTACAAACATCTGTCATTCAATAAAATTGCAATCTCATTGGAATTTTGTAGTTGGTGCTGTTCCTGCACGGCTACTTTTTCATCATAGTGGTCAAGCCTTTCCTGAACTTGCCTTCTAGCAGGCTGCTCAGCA

Ace file of the UniGene sp_v3.0_unigene5385

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box/kelch-repeat protein [Arabidopsis thaliana] sp\|Q3EB08.1\|FBK69_ARATH RecName: Full=F-box/kelch-repeat protein At3g24760 gb\|AEE76944.1\| F-box/kelch-repeat protein [Arabidopsis thaliana]	-	-	0.0	47%
FL-Next	sp=F-box/kelch-repeat protein At3g24760; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Sma3	F-box/kelch-repeat protein At3g24760	-	-	8.772e-06	-

Source	Gene names
Sma3	At3g24760; K7P8.5; RCOM_1721290; VITISV_001761;

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G24760.1	Galactose oxidase/kelch repeat superfamily protein chr3:9040108-9041259 FORWARD LENGTH=383	0.0	50%
RefSeq	Arabidopsis thaliana	NP_189120.1	F-box/kelch-repeat protein [Arabidopsis thaliana]	0.0	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3EB08

Fln msg:

Fln protein: MAMEVDGFCEQHGGSLELDWNRLNSDITEVVLARLPVSSIVRSCIVCKHWYSLITQPSFTARLRVCKKPWFFLYGQNNIFLKNNQAFGFDPEANEWIRLPTSSFPQPCAEDSLAGSGGFLFATTGTACSRFCYAPVLKSSWKVTAPLRFSRRQPLVGVFKEGHYGFIVVGGVRFIGGLVDIEDRLAVEIYDSSKDSWELCAPLPADFRSGNSSQWLTSALLKGKFYVFGIYSGYISAFDLQHKAWGGVQIVRPPGIIFSFLLACQNNLILAGLRNGADGPMFNLWKVEEESMAFCEVGSMPQELLYSLFDSEEDDKFASLKCVGLGSLIYVFNEEHHKMYPACVCDISPKLDCTWTKVPPLPFPVNRFHKVISFCSTVALDSIL*

Protein Length: 386

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGCCTCCTTCAACTCCAACAAGAAACTCCAAAACGTGAGTAAAACACACACCAAATGTCATGTCAAAAATAAGTAATATCTCGCAATCATTTCAAAACTACACCGCAAAACTCGTCAAGTTTGGAGTTGAAGAAGATCGAGACAGGACAAATTGGGTTACCTGTCATTTCCTCAATGTCTGCAACTTTTATCTCTCGCAAATAGAGGTATTCAATGCACAGCCTGCAGCCATCACTTTTCAGATTTTTCCTCATTCGTGGCCGAAGGCGGTTATCTGCTGTGGCTCCAGACAAATTTGCAAACAGCATTATTCAGGTTTTTCCTCATTCGTGGCCGAAGGCGGTTATCTTCTGTAGCTCCAGACCAAGCTGATCAACAGTGGGCTTTACATCTGGTACTGAGAGGTATCTTCTCTGTTAACCCCTATCACATAAAATTGTATTCTAAAAAACTTTATGAATGATTGTTATTTTTTCTTCTGCAACCTATAAAACCCTACGTAGGCCGTTCCCAAAATACCCAACTGGCTTGCGCCGATTTTTTCATCCCAAACACCCTTAGACCGCCTGCATTGAGTTGGGTTTCAGTCAAAATTGCCTC_-_ATGGCCATGGAAGTTGATGGGTTTTGCGAGCAACATGGGGGATCCCTTGAGTTAGATTGGAACCGCTTGAATTCTGATATCACCGAGGTTGTACTTGCTCGGCTGCCAGTCAGCTCCATTGTTCGCTCGTGTATCGTCTGCAAGCACTGGTATTCTCTCATAACCCAGCCCTCGTTTACAGCCAGGCTTAGGGTTTGCAAGAAACCCTGGTTTTTCCTGTATGGCCAAAACAACATTTTCTTGAAGAATAACCAGGCATTTGGCTTTGATCCAGAGGCCAATGAATGGATCCGTTTGCCTACTTCATCGTTTCCCCAGCCCTGTGCTGAGGATTCCTTGGCAGGTTCAGGAGGGTTTCTGTTTGCCACCACTGGGACTGCCTGTTCTAGGTTCTGTTATGCCCCGGTGTTGAAGAGTTCATGGAAGGTAACTGCCCCGCTAAGGTTCTCCAGGCGCCAGCCTCTGGTGGGAGTGTTTAAGGAGGGCCATTATGGGTTCATTGTAGTTGGGGGTGTCAGATTCATTGGGGGGCTGGTTGATATCGAGGATAGATTGGCTGTTGAAATCTACGACTCTAGCAAAGATTCATGGGAACTCTGTGCCCCTTTGCCAGCGGATTTCCGATCCGGTAACTCCTCGCAGTGGCTGACTTCTGCATTGCTGAAAGGGAAATTCTATGTCTTCGGGATCTATTCAGGGTATATTTCAGCGTTCGATCTGCAGCACAAGGCATGGGGTGGTGTCCAGATTGTTCGCCCCCCGGGGATTATATTCTCATTTCTTCTGGCTTGCCAGAACAACCTTATCTTGGCTGGTTTGCGCAATGGCGCCGATGGGCCGATGTTTAATCTCTGGAAAGTCGAGGAAGAATCGATGGCGTTCTGTGAGGTTGGTTCCATGCCCCAGGAGCTTCTGTATTCTTTGTTTGATAGTGAGGAGGATGATAAATTTGCAAGCTTAAAGTGTGTGGGGCTTGGGAGTCTCATTTATGTCTTCAATGAAGAACATCACAAGATGTATCCTGCTTGTGTCTGTGACATTTCTCCGAAATTGGATTGCACCTGGACAAAAGTTCCTCCGTTGCCTTTCCCTGTAAATAGGTTCCACAAGGTTATCAGCTTCTGTTCCACAGTTGCACTTGATAGCATTCTTTGA___TTCGAGATGTCACACCATTGGTTGCATGCCTTACATATTGTTGGTTCCAGTCATATGGAGTCATGTAAAACCCTTTATACATGCCTGGTGAGTGTGGCTAACATCAAGGATCGGTAGAAGAATTTGCAGTTCTATTTTATTGGCTTGCTTTACTTATCTACATTTGCGGAGCAACTTGCAAATCGGACAATGGGTTTTCGGGTGTGTACAGTGGCCAGCTATCATATGTAAAATTCCTGTTTGTTGCGGTTGTCTAAATTTATTTCTTGGGGTCTGTATAAAATGGGTGATGAGGGGCTGAGTTTATTAATCCGCTCCTCATTTACTCTTAGAAGTCTATGATTTGATTAGGGTTGGTTCTATGCTTCACAAAGAAGAATCCATGATAAGTTATTTTAATAGATTTTATAATTTTCAAGCAGGTGAACTTATAGCTTGTACAAACATCTGTCATTCAATAAAATTGCAATCTCATTGGAATTTTGTAGTTGGTGCTGTTCCTGCACGGCTACTTTTTCATCATAGTGGTCAAGCCTTTCCTGAACTTGCCTTCTAGCAGGCTGCTCAGCA

Fln Alignment:

Contig5385___WNRLNSDITEVVLARLPVSSIVRSCIVCKHWYSLITQPSFTARLRVCKKPWFFLYGQNNIFLKNNQAFGFDPEANEWIRLPTSSFPQPCAEDSLAGSGGFLFATTGTACSRFCYAPVLKSSWKVTAPLRFSRRQPLVGVFK--EGHYXXXXXXXXXXXXXXXDIEDRLAVEIYDSSKDSWELCAPLPADFRSGNSSQWLTSALLKGKFYVFGIYSGYISAFDLQHKAWGGVQIVRPPGIIFSFLLACQNNLILAGLRNGADGPMFNLWKVEEESMAFCEVGSMPQELLYSLFDS-EEDDKFASLKCVGLGSLIYVFNEEHHKMYPACVCDISPKLD--CTWTKVPPLPFPVNRFHKVISFCSTVALDSI
Q3EB08______________FNNLNIDVTESILYHLPIPSLVRFTLVSKQWRSLITSLPPSPSPSPSSPPWLFLFGIHNTSSFHNQSFAFDPLSNTWLRLPPSS----SSSDHLVGSNRFLFTTA----PRFSFSPILKPNWRFTSPVRFPRINPLLTVFTTLSNSSKLILVGGSSRIGGLVDIEERLAVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFISSFCLDSYTWSDVQTLKPPGLSFAYLNSCNGMLVLGGM----CGFSFNLWSIEEGSMEFSEIAVMPEDLLFGLVDSDDEDDKFRSLKCAGSGNLVYVFNDDCHKKFPACVCEIGGGENGICSWRRVPCLPSPVNKFHKVVSFCSTVSITDV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
1577		11		88	0.923564
1817	81		6	12	0.999943
1944	90		10		0.90298
2002		10		90	0.90298
2003	90		10		0.90298
2006	90		10		0.90298
2009		10		90	0.90298
2010		10	90		0.90298
2012	90			10	0.90298
2013	90		10		0.90298
2014	90		10		0.90298
2015	90	10			0.90298
2021	10		90		0.90298
2197		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain