SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5384

Length: 2204 nt

UniGene Fasta

>sp_v3.0_unigene5384
GTTTGAAAGAAGCAAGACACCTGTTACGCGACAAATTCCAAAGGTTCGAACAAGTGAGGCTTACGCCTGTATGAAAAGATCTCAAAGGCCTCCTAATTCGTCGGAATCTGAATGTAATATTACCCGACGAGTTGCTGCATCTGGTAATGAATCGGGCCAGCAAAAACATTTGGTAAAGGAATTGCAGGAAAAGGAAGAAAAACTTCAAAATGAACTTCTACTCGAGCAGGAAGAGCTAAATAGGGCACTGCATAAAGTTGCCGAGTTGGAGAAAGAGCTCAGCACGAAGTGTGGTGAAATTGAGTATTTGAATAAGATAATTGATTGTCTGAAAACCGAGAACTCTGCAAACGTAGTACAGCAGTCACAGAAAATGAAAGATTTGAAGGCTGAACTTACCCAATTGCGCGACTTGAACAAGGAACTTGAGCAGCAGAAAAGAGAAATGGCAAACAAGCTTGAAGCAGCGGAATCGCAGTTTCGTCCTTTAAGCCATGCCACTGAGGCCAAGATAAATGAACGACCTAACGGCATAGGGGTTTCCGTCCCTCTTCTATCAAAGACCATATCAACAGAGCTTGCGGGAAAATATCCTGAATCTAAAGTCAAACACGATTCGATGTTCCGTAGCCTTGAACATGGTAAGGTGGAAATGGCAAGGAAAACTATGGTAGAGAATGAAGCAATAGCTGTCAAGCAGCCTCCTTTGACAAAATTTATCTCATTAGAAGATGGAAACAAGCTATTAAACTTACACAAGCCTCCTCCAAAACCTCTGTCAGGAAATACCGCAGGCCTAACTATTGCATCTCCAAAAAGTGACAGCAGTGTGCCAGCACCACCGCCGCCGCCACCACCTCCTACTCATCACGCCCTTCATCCTAAGTTCACAGTTAGAAAAGATGTTGTGCAGAAAGCTCCAGAAGTAGTCAAGTTTTACCAGTCATTGATGAAACGAGATGCCAAAAAAGACACATGTGGAACTGGAATTTTTGATAATCAAGATGTAGCGATTGCTCACAGTGACATGATTGGAGAAATCAAGAATCGTTCTGCACATTTACTGGCAATCAAATCAGATGTGGAGACAAAAGGTCACTTTGTCCGATCCTTGATAAGAGAAGTGCAGGCTGCAGCATATACAGACATCGACGATGTTCTAGCTTTTGTTCAGTGGCTTGACGATGAGCTTGCTTCTCTTGTAGATGAGAGAGCAGTCCTGAAACATTTTGACTGGCCAGAGAAGAAAGCTGACATAATGCGGGAAGCTGCATTTGGATACCAGGATGCGAAAAAGTTGGAATCAGAAGTTTGGCAATATGAAGATGACCTTCGTCAGCCTTGTGATGTTGCCTTAAAGAAGATGACAGTATTATTAGAAAAGCTGGAGCAAAGTGTCTATAACCTGCTACGTAAAAGAGAAACATCAATTACCGTCTACAAACAGTTTCATATTCCAACTGATTGGATGCTTGACAGTGGCATGATAAGCAAGATAAAGGTGGCTTCTGTTAAACTAGCCAAAAAGTACATGAACCGAATATCTATCGAGCTTGAATCAATGGGAAACCCTGAGAAGGAACCTGCACTGGAGTTCTTGCTGCTTCAAGGCGTGCGTTTTGCTTATAGAGCTCATCAGTTTGCAGGAGGATTTGATGAAGAAACAATGCATGCTTTTGAGGAATTGAGAAAACTAGCCTGCATCCATGATGAAGAGCAACAAAATTTACAGTTGTCTGGTTTATCAGCTCAGTAGCCTTCCAAAGCAAACACCTATGATTCTTGAAAGATAATGATGTGTGTAATAAGACATTAAGTTCTATACAGCCACCATGAATTTCAAGAATAAACTCCGTCTCTCCAATTGGATTTGTTAGTTTGTTCTCATTTGCAAGGTCCTAGGACCAAATCACTGAGAGCACACTACTCTGCATATGCCAATGTGCCGTTATTCAGCCCTGTTGCATTGTATTGGACTTTTGAGTCTTGACAACTGCAGTTTTGGATGATCTCTATGGTTGTTGGTCCCTTCTATGTATGGGATGGGCCATGATGATGGACTGCTTTGAGTGAAACTGTAAGAGGATAGTCCCTGATCGAAAATTTTAGGTGTATTGTGTGCACCTCCCAAGCCACAATGAGAACGTGGGTACCTATTATGCATGGAGTTATATTTCAGCCCTGTGCTTTGCTAGATAAAATTG

Ace file of the UniGene sp_v3.0_unigene5384

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Spc7 multi-domain protein	-	-	2.0e-05	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Sma3	Chloroplast unusual positioning 1B	-	-	2.848e-09	-

Source	Gene names
Sma3	AT4g18560; At1g07120; At1g48280; At3g25690; At4g18570; CHUP1; CHUP1A; CHUP1B; F10K1.18; F11A17.16; F28J12.220; GSVIVT00019730001; GSVIVT00024064001; GSVIVT00029855001; GSVIVT00030273001; GSVIVT00035896001; LOC_Os03g18300; Os01g0652000; Os03g0294100; Os08g

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Fructose-2,6-bisphosphatase	IPR003094	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	6-phosphofructo-2-kinase	IPR013079	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G25690.1	CHUP1 Hydroxyproline-rich glycoprotein family protein chr3:9354061-9357757 FORWARD LENGTH=1004	58%
RefSeq	Arabidopsis thaliana	NP_001189975.1	protein CHUP1 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002317077.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUN1

Fln msg: your sequence is longer than subject: 562 - 314

Fln protein: MKRSQRPPNSSESECNITRRVAASGNESGQQKHLVKELQEKEEKLQNELLLEQEELNRALHKVAELEKELSTKCGEIEYLNKIIDCLKTENSANVVQQSQKMKDLKAELTQLRDLNKELEQQKREMANKLEAAESQFRPLSHATEAKINERPNGIGVSVPLLSKTISTELAGKYPESKVKHDSMFRSLEHGKVEMARKTMVENEAIAVKQPPLTKFISLEDGNKLLNLHKPPPKPLSGNTAGLTIASPKSDSSVPAPPPPPPPPTHHALHPKFTVRKDVVQKAPEVVKFYQSLMKRDAKKDTCGTGIFDNQDVAIAHSDMIGEIKNRSAHLLAIKSDVETKGHFVRSLIREVQAAAYTDIDDVLAFVQWLDDELASLVDERAVLKHFDWPEKKADIMREAAFGYQDAKKLESEVWQYEDDLRQPCDVALKKMTVLLEKLEQSVYNLLRKRETSITVYKQFHIPTDWMLDSGMISKIKVASVKLAKKYMNRISIELESMGNPEKEPALEFLLLQGVRFAYRAHQFAGGFDEETMHAFEELRKLACIHDEEQQNLQLSGLSAQ*

Protein Length: 563

Fln nts: GTTTGAAAGAAGCAAGACACCTGTTACGCGACAAATTCCAAAGGTTCGAACAAGTGAGGCTTACGCCTGT_-_ATGAAAAGATCTCAAAGGCCTCCTAATTCGTCGGAATCTGAATGTAATATTACCCGACGAGTTGCTGCATCTGGTAATGAATCGGGCCAGCAAAAACATTTGGTAAAGGAATTGCAGGAAAAGGAAGAAAAACTTCAAAATGAACTTCTACTCGAGCAGGAAGAGCTAAATAGGGCACTGCATAAAGTTGCCGAGTTGGAGAAAGAGCTCAGCACGAAGTGTGGTGAAATTGAGTATTTGAATAAGATAATTGATTGTCTGAAAACCGAGAACTCTGCAAACGTAGTACAGCAGTCACAGAAAATGAAAGATTTGAAGGCTGAACTTACCCAATTGCGCGACTTGAACAAGGAACTTGAGCAGCAGAAAAGAGAAATGGCAAACAAGCTTGAAGCAGCGGAATCGCAGTTTCGTCCTTTAAGCCATGCCACTGAGGCCAAGATAAATGAACGACCTAACGGCATAGGGGTTTCCGTCCCTCTTCTATCAAAGACCATATCAACAGAGCTTGCGGGAAAATATCCTGAATCTAAAGTCAAACACGATTCGATGTTCCGTAGCCTTGAACATGGTAAGGTGGAAATGGCAAGGAAAACTATGGTAGAGAATGAAGCAATAGCTGTCAAGCAGCCTCCTTTGACAAAATTTATCTCATTAGAAGATGGAAACAAGCTATTAAACTTACACAAGCCTCCTCCAAAACCTCTGTCAGGAAATACCGCAGGCCTAACTATTGCATCTCCAAAAAGTGACAGCAGTGTGCCAGCACCACCGCCGCCGCCACCACCTCCTACTCATCACGCCCTTCATCCTAAGTTCACAGTTAGAAAAGATGTTGTGCAGAAAGCTCCAGAAGTAGTCAAGTTTTACCAGTCATTGATGAAACGAGATGCCAAAAAAGACACATGTGGAACTGGAATTTTTGATAATCAAGATGTAGCGATTGCTCACAGTGACATGATTGGAGAAATCAAGAATCGTTCTGCACATTTACTGGCAATCAAATCAGATGTGGAGACAAAAGGTCACTTTGTCCGATCCTTGATAAGAGAAGTGCAGGCTGCAGCATATACAGACATCGACGATGTTCTAGCTTTTGTTCAGTGGCTTGACGATGAGCTTGCTTCTCTTGTAGATGAGAGAGCAGTCCTGAAACATTTTGACTGGCCAGAGAAGAAAGCTGACATAATGCGGGAAGCTGCATTTGGATACCAGGATGCGAAAAAGTTGGAATCAGAAGTTTGGCAATATGAAGATGACCTTCGTCAGCCTTGTGATGTTGCCTTAAAGAAGATGACAGTATTATTAGAAAAGCTGGAGCAAAGTGTCTATAACCTGCTACGTAAAAGAGAAACATCAATTACCGTCTACAAACAGTTTCATATTCCAACTGATTGGATGCTTGACAGTGGCATGATAAGCAAGATAAAGGTGGCTTCTGTTAAACTAGCCAAAAAGTACATGAACCGAATATCTATCGAGCTTGAATCAATGGGAAACCCTGAGAAGGAACCTGCACTGGAGTTCTTGCTGCTTCAAGGCGTGCGTTTTGCTTATAGAGCTCATCAGTTTGCAGGAGGATTTGATGAAGAAACAATGCATGCTTTTGAGGAATTGAGAAAACTAGCCTGCATCCATGATGAAGAGCAACAAAATTTACAGTTGTCTGGTTTATCAGCTCAGTAG___CCTTCCAAAGCAAACACCTATGATTCTTGAAAGATAATGATGTGTGTAATAAGACATTAAGTTCTATACAGCCACCATGAATTTCAAGAATAAACTCCGTCTCTCCAATTGGATTTGTTAGTTTGTTCTCATTTGCAAGGTCCTAGGACCAAATCACTGAGAGCACACTACTCTGCATATGCCAATGTGCCGTTATTCAGCCCTGTTGCATTGTATTGGACTTTTGAGTCTTGACAACTGCAGTTTTGGATGATCTCTATGGTTGTTGGTCCCTTCTATGTATGGGATGGGCCATGATGATGGACTGCTTTGAGTGAAACTGTAAGAGGATAGTCCCTGATCGAAAATTTTAGGTGTATTGTGTGCACCTCCCAAGCCACAATGAGAACGTGGGTACCTATTATGCATGGAGTTATATTTCAGCCCTGTGCTTTGCTAGATAAAATTG

Fln Alignment:

Contig5384___VQKAPEVVKFYQSLMKRDAKKDTCGTGIFDNQDVAIAHSDMIGEIKNRSAHLLAIKSDVETKGHFVRSLIREVQAAAYTDIDDVLAFVQWLDDELASLVDERAVLKHFDWPEKKADIMREAAFGYQDAKKLESEVWQYEDDLRQPCDVALKKMTVLLEKLEQSVYNLLRKRETSITVYKQFHIPTDWMLDSGMISKIKVASVKLAKKYMNRISIELE-SMGNPEKEPALEFLLLQGVRFAYRAHQFAGGFDEETMHAFEELRKLACIHDEEQQNLQLS
A9NUN1______________VHRAPELVEFYQSLMKREAKKEAA-TMASAASNVADVRNNMIGEIENRSAFLLSVKADVETQGDFVQALATEVRASAYKNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPESKADALREAAFEYQDLKRLESVAASFVDNPNLSCDAALKKMYSLLEKVEQSVYALLRTRDMAIARYKEFNIPTDWLLDSGVVGKIKLASVQLARKYMKRVTSELDAALNDPDKEPIKEFLLLQGVRFAFRVHQFAGGFDAESMNAFEDLRNR--VHGQAEETDKMS

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1299			88	11	0.923564
1300		33	11	55	1.0
1317	11		88		0.923564
1320	88			11	0.923564
1372			87	12	0.992554
1611	88	11			0.923564
1613			88	11	0.923564
1618	11	88			0.923564
1619		11	88		0.923564
1620		11		88	0.923564
1623			11	88	0.923564
1628	88		11		0.923564
1631		11	88		0.923564
1647	88			11	0.923564
1723	28	71			1.0
1724	75	25			1.0
1802	12		87		0.992554
1803		12		87	0.992554
1804	12		87		0.992554
1806	87			12	0.992554
2054	7		35		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain