SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5381

Length: 1165 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5381

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha-L-fucosidase 1 n=3 Tax=Andropogoneae RepID=B6UDD6_MAIZE	-	-	0.0	57%
FL-Next	sp=Putative alpha-L-fucosidase 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	53%
Sma3	Alpha-L-fucosidase 1	-	-	3.829e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alpha-L-fucosidase.	EC:3.2.1.51	-	4.114e-16	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Other glycan degradation	00511		4.114e-16	%

Source	Gene names
Sma3	At2g28100; B0103C08-B0602B01.14; F24D13.11; FUC1; GSVIVT00022175001; GSVIVT00038518001; GSVIVT00038520001; LOC_Os04g47280; OSJNBa0084K11.7; Os04g0560400; Os09g0520800; OsI_16968; OsI_32076; OsJ_30048; P0669G04.14; PHYPADRAFT_209606; POPTRDRAFT_204508; POP

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	alpha-L-fucosidase activity	GO:0004560	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	glycoprotein catabolic process	GO:0006516	Biological Process	-
Sma3	cell adhesion	GO:0007155	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Coagulation factor 5/8 C-terminal type domain	IPR000421	-	-
Sma3	Glycoside hydrolase, family 29	IPR000933	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 29, conserved site	IPR018526	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G28100.1	ATFUC1, FUC1 alpha-L-fucosidase 1 chr2:11974803-11976489 FORWARD LENGTH=506	55%
RefSeq	Arabidopsis thaliana	NP_180377.2	alpha-L-fucosidase 1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002313533.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q7XUR3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 287 - 517

Fln protein: SVTRAG*RVPRAGRCLTAAMSPLATQYSRQGDPYGTNLVPPECDVSIRSGWFWHKNEQPKTLNSLLEIFYESVGRNCMLLLNVPPNSTGLLAEEDVHVLRQFKDILTSIFSINLAGNAVVTASSVRGSSSQFGPSQIFSDDVFTYWAPEEGQTTWYLLIDLRDVVSFNVLCIKEAIQLGQRVSQYHLDILKDGSWHTVVNGTTIGYKRLERFELMRSQFLKLTIDQARVEPLIAYFGLYMDNVSSIHASDIEGRISSSGSTLMPDKLNSLDVKIQSVSGNMSKIVS*

Protein Length: 288

Fln nts: TCGGTGACGAGGGCGGGGTAGCGGGTTCCACGTGCTGGTCGATGTTTAACAGCAGCGATGTCACCATTGGCCACACAATATTCTCGCCAAGGTGATCCTTATGGTACAAATTTGGTACCTCCAGAATGTGATGTGTCGATAAGATCAGGTTGGTTTTGGCACAAGAATGAGCAACCCAAAACACTAAATTCTTTGTTGGAAATATTTTACGAATCAGTGGGAAGAAATTGTATGCTACTGTTAAATGTGCCACCAAATAGCACAGGTCTTCTTGCTGAAGAAGATGTCCATGTGCTTCGTCAATTCAAAGATATTCTTACTTCAATATTTTCTATTAATTTAGCTGGAAATGCTGTTGTCACTGCAAGTAGTGTTCGTGGAAGCAGTTCCCAATTTGGACCAAGTCAGATCTTTAGTGATGATGTGTTTACCTATTGGGCTCCTGAAGAGGGGCAGACAACATGGTATCTACTCATAGACTTGAGAGATGTTGTGTCCTTCAATGTATTGTGCATAAAAGAAGCAATCCAACTAGGACAGAGAGTGAGTCAATACCACCTGGATATTTTAAAAGATGGTTCTTGGCATACAGTTGTAAATGGTACCACTATTGGATACAAAAGGCTAGAACGTTTTGAACTCATGAGATCTCAATTTTTGAAACTTACCATAGATCAGGCTCGAGTTGAACCATTGATTGCCTACTTTGGTCTCTACATGGACAACGTGTCCAGTATTCATGCCAGTGACATCGAGGGAAGAATCTCAAGTTCAGGATCCACACTCATGCCAGATAAACTTAACAGCTTGGATGTGAAAATACAATCAGTTTCTGGAAATATGAGCAAAATAGTTAGCTAA___AATCTTTTTCATTGAAAGCGTGATATTTTTCATTATCCTTTAATATGGTATTGTGTGACAAGAAAGCAGGAGGATAAGTTTTCTTGTCAATCTTGTTTTTAGGGATAATGCCTGTTTAGATTATTCAATTACGAATGAGATGCAGTCAATGACTGGGTTTGGATTGAAATTCAAGTTCATAGTTTGAATCTCCCTAAAGCTGAACTGTGGAGGCAATAGCAGTGAGCCAAGCAGAAAAGATCACTCCAGGTGGACAGAAGTACTTGTATGACTCGGGGGGATGTAGAGATTGGCAGGTGTTTTA

Fln Alignment:

Contig5381___TAAMSPLATQYSRQGDPYGTNLVPPECDVSIRSGWFWHKNEQPKTLNSLLEIFYESVGRNCMLLLNVPPNSTGLLAEEDVHVLRQFKDILTSIFSINLAGNAVVTASSVRG--SSSQFGPSQIFSDDVFTYWAPEEGQTTWYLLIDLRDVVSFNVLCIKEAIQLGQRVSQYHLDILKDGSWHTVVNGTTIGYKRLERFELMRSQFLKLTIDQARVEPLIAYFGLYMDNVS
Q7XUR3______________TVTIGHIIPEYSRCGDPFGQDWVPAECDVSIRPGWFWHASEKPKNATTLLDIYYKSVGRNCLLILNVPPNSSGLISTEDMQVLQEFTEIRQTIFSQNFAANATVTASTVRGGLGNQQFAPSNVLQESIYSYWAPEEGQSSWEMLFDLGQSASFNVIQLQEPIQMGQRVIKFRVEILVDELWQTIVEGTTIGYKRLFQFPVVEGQFLKLSIDGARADPLISFFGVFTDSFS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
854		33		66	0.997452
949		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain