SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5374

Length: 1037 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene5374 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bHLH protein [Arabidopsis thaliana]	-	-	3.0e-40	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Myc-like anthocyanin regulatory protein	-	-	2.131e-21	-

Source	Gene names
Sma3	At1g63650; At4g09820; At5g41315; B-Peru; BH2; BHLH1; BHLH2; BHLH42; EGL1; EGL3; EN30; EN31; EN32; F17A8.170; GL3; GSVIVT00000427001; GSVIVT00023708001; GSVIVT00026866001; GtbHLH1; InbHLH1; InbHLH2; IpIVS; IpbHLH1; ItIVS; LHbHLH1; LHbHLH2; LjTT8; MYC; MYC1

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	epidermal cell fate specification	GO:0009957	Biological Process	-
Sma3	trichome differentiation	GO:0010026	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002302118.1	predicted protein [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACI9

Fln msg:

Fln protein: MAIMCKGRGKAMASSSNRNGNISGRLDNEICQSRLRLQMKAALQSIGWTYSIFWKFSAKQGRLVWNNGFFNGDFKTKEIGEGMEEELHQREEMHEKRTLQLRELFQSLSARGSSSLPTRQQYSLLSPEDLTDTEWFYLTSMSYDFRHSVGLPGITLERGSPLWLSNAGEAHTKTFKRHLLAKSSGIQTVVCLPFTDGVLEFGVTELVHEDGDVIENITSFFVDLL*

Protein Length: 227

Fln nts: ACAGAACCATGTGAAACGACGGGAATATTTTTGCGCTTCCGAGGTTGCATTTCAATAATGGTCCACTTATGAGATTCCTCAAAGGCCAAGCTACAGCTACCAGCAAGGGCCGCTTGCTCCTGATTAGCTTGGGAAAAGGGCTGAAACAATT_-_ATGGCTATAATGTGCAAGGGGAGGGGAAAGGCAATGGCTTCTTCTTCAAACCGGAATGGCAACATATCAGGACGTCTTGACAATGAAATCTGTCAAAGTAGACTAAGGTTACAGATGAAAGCAGCCCTTCAAAGCATAGGGTGGACATACTCTATATTCTGGAAGTTTTCTGCAAAACAAGGAAGATTGGTTTGGAATAATGGTTTTTTCAATGGAGATTTCAAAACGAAGGAAATAGGAGAAGGGATGGAGGAGGAGTTGCACCAACGGGAAGAGATGCATGAGAAGAGAACTCTTCAATTAAGAGAACTATTTCAGTCCCTCTCTGCTCGAGGAAGTAGCAGTCTTCCAACTAGGCAGCAGTATAGCCTGTTATCACCAGAAGATCTCACAGATACAGAGTGGTTCTATTTGACCAGCATGTCATATGATTTTCGACATTCTGTTGGATTACCCGGCATCACGCTAGAAAGAGGAAGCCCATTATGGCTCAGCAACGCAGGGGAAGCACATACCAAAACCTTCAAACGACATCTTCTTGCAAAGAGTTCTGGCATTCAGACAGTGGTGTGCCTTCCCTTCACAGACGGGGTGCTGGAGTTTGGTGTTACAGAGCTGGTTCATGAAGATGGTGATGTTATAGAAAATATCACGAGTTTTTTTGTCGATCTGTTATGA___TCGCTATATTTCCAGGTAACAACTTCAAAGAAGGATTGGAAGAACGAAACTGCAACTATCAAATAATTGTTTTATTGTTTAATCTTACTGAGTTGTTTTATTGTTTGATCTTACTGAGTTGGTTAGATATAATGACTTTGAATTTTTTCTATTTTGTTACTTCAAAATTCAGTATAACAGGGAATACCATTAACTAAAAAATTCTCTT

Fln Alignment:

Contig5374___MCKGRGKAMAXXXXXXXXXXXRLDNEICQSRLRLQMKAALQSIGWTYSIFWKFSAKQGRLVWNNGFFNGDFKTKEIXXXXXXXXXXXXXXXEKRTLQLRELFQSLSARGSSSLPTRQQYSLLSPEDLTDTEWFYLTSMSYDFRHSVGLPGITLERGSPLWLSNAGEAHTKTFKRHLLAKSSGIQTVVCLPFTDGVLEFGVTELVHEDGDVIENITSFFVDLL
D5ACI9______________MCKGTGKTMASSSSGNDNVSGRFNDEISQSRLRFQMKTALQNIGWTYSVFWKFSPQQGILVWNNGFFNGDFKTNEIGQGMEEELHLQEEMHEKRTLQLRELFESLSARGSSSLPTRQQYSLLSPEDLTDTEWFYLTCMSYDFRHSVGLPGITLERGNPMWLSNAGEAHTKIFKRHLLAKSSGIQTVVCLPFTDGVLEFGVTELVHEDRDLIEHITSFFVDLL

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
579	10			90	0.90298
580		70	30		1.0
581			10	90	0.90298
583		10		90	0.90298
584	10			90	0.90298
586	90		10		0.90298
587			10	90	0.90298
589		10	90		0.90298
591	90	10			0.90298
599	10	90			0.90298
600	10			90	0.90298
602		90	10		0.90298
619		11	88		0.923564
620		11		88	0.923564
630	12			87	0.992554
632	12	87			0.992554
634		87		12	0.992554
749		14		85	0.993533
835	12		87		0.992554
887	87			12	0.992554
905	16	83			0.994512
943		16		83	0.994512
961		33	66		1.0
962	66	33			1.0
967		80	20		0.995493
987		33	66		0.997452
988	66	33			0.997452
989	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain