SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5365

Length: 1502 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5365

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	carboxypeptidase C [Arabidopsis thaliana] sp\|Q8L7B2.2\|SCP20_ARATH RecName: Full=Serine carboxypeptidase-like 20; Flags: Precursor gb\|AEE83202.1\| carboxypeptidase C [Arabidopsis thaliana]	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002321240.1	predicted protein [Populus trichocarpa]	0.0	48%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL22

Fln msg: Distance to subject end: 26 aas, your sequence is shorter than subject: 475 - 505

Fln protein: MTSQTKLMQFVVNLFLIHVIISIISSVQLHCKGAPANARVESFPGYDGNISFEIYAGYMTVSEVTGRELFYYFVKSERDPANDPLLLWLTGGPGCTGFTGFVYEIGPMSFDFKNTTGNLPRLMPYPHSWTKVSNIIFLDSPVGTGFSYSNTSTDYLTGDFKAASDIHTFLIQWFEAFPEFLSNPFYVGGDSYSGIIVPLVVNEIANENAAGIKYPTLNLKGYLVGNGITDEAFDSTQVPFAHGKGLISDELYQAVKETCNGSYYSTNASCQSKILEVWKVLNGTNRGNILDPVCYTHSLGSRSRILTKRYEKLEIFDQFLGSTSRISSHGCFTKSSEDGCLTVHLQLGYQDRPCPAVDKYFLSDIWANNPYVRKAIHAQSEEITGEWERCTHRFNYDYQVHSVIEYHRNLTMKGYRALIYSGDMDLIVPFIGTEAWVRSLNYTILDDWRSWWVDQQVAGYTRLYKHNLTFATINI

Protein Length: 476

Fln nts: ATGGGCACAAGAGATATATATATTGAGAGTGTTGTTTTCTTTTTAATTGAAGTGAGGTTTGGTCGATTTCCATAGCA_-_ATGACTTCCCAGACGAAGTTGATGCAGTTTGTCGTTAATTTATTCCTTATCCATGTAATTATATCTATTATCAGTTCAGTTCAACTGCATTGCAAGGGGGCACCTGCAAATGCAAGAGTAGAGTCCTTTCCAGGTTACGATGGCAATATTAGTTTTGAGATATATGCTGGGTACATGACAGTCAGTGAGGTTACTGGAAGAGAACTTTTTTACTATTTTGTGAAGTCAGAAAGAGATCCAGCAAATGATCCACTTCTTCTTTGGCTTACAGGAGGTCCTGGTTGCACCGGTTTCACTGGATTTGTCTATGAGATTGGTCCAATGAGTTTTGATTTCAAGAACACTACCGGGAATTTGCCCAGGCTCATGCCCTATCCACACTCTTGGACTAAGGTCTCCAACATTATTTTTCTCGATTCTCCAGTTGGGACTGGTTTTTCTTACTCCAATACATCTACAGATTACCTGACTGGAGATTTTAAAGCTGCTTCAGATATACATACTTTCCTCATACAGTGGTTTGAAGCATTCCCCGAGTTTCTATCTAATCCATTTTATGTCGGAGGGGATTCTTATTCTGGTATAATTGTTCCACTGGTGGTAAATGAAATCGCAAATGAAAATGCAGCTGGCATTAAGTACCCAACCTTGAACCTTAAGGGTTATCTGGTTGGAAATGGAATTACAGATGAAGCATTTGACAGCACACAGGTCCCTTTTGCACATGGAAAGGGACTTATTTCAGATGAATTATACCAGGCAGTAAAGGAGACTTGCAATGGTAGCTATTATTCCACCAATGCTTCTTGTCAATCGAAGATATTAGAAGTGTGGAAGGTTTTGAACGGAACCAACAGAGGCAATATTCTTGATCCGGTTTGTTACACACATAGCCTAGGTAGTCGATCAAGAATTCTAACCAAGAGGTACGAAAAATTAGAAATATTTGATCAGTTTCTTGGGTCAACGAGCAGAATCTCTAGTCATGGTTGTTTTACAAAATCCTCTGAGGACGGATGTCTGACAGTTCATCTACAACTTGGTTACCAGGATAGGCCATGCCCTGCTGTGGACAAATATTTTCTTTCGGACATTTGGGCAAATAATCCCTATGTCAGAAAAGCAATTCATGCGCAATCGGAAGAGATAACTGGAGAGTGGGAAAGGTGCACCCACCGCTTTAATTATGATTATCAAGTTCATAGCGTAATTGAATATCATCGCAATCTTACCATGAAGGGCTATCGCGCTTTAATCTACAGTGGTGATATGGATCTAATTGTACCATTCATTGGAACTGAAGCATGGGTCAGATCATTGAACTACACAATACTTGATGATTGGAGATCTTGGTGGGTGGATCAACAAGTTGCAGGATACACAAGGTTATACAAACACAACCTAACATTTGCAACGATCAACATT

Fln Alignment:

Contig5365___MTSQTKLMQFVVNLFLIHVXXXXXXXVQLHCKGAPANARVESFPGYDGNISFEIYAGYMTVSEVTGRELFYYFVKSERDPANDPLLLWLXXXXXXXXXXXXVYEIGPMSFDFKNTTGNLPRLMPYPHSWTKVSNIIFLDSPVGTGFSYSNTSTDYLTGDFKAASDIHTFLIQWFEAFPEFLSNPFYVGGDSYSGIIVPLVVNEIANENAAGIKYPTLNLKGYLVGNGITDEAFDSTQVPFAHGKGLISDELYQAVKETCNGSY-YSTNASCQSKILEVWKVLNGTNRGNILDPVCYTHSLGSRS----RILTKRYEKLEIFDQFLGSTSRISSHGCFTKSSEDGCLTVHLQLGYQDRPCPAVDKYFLSDIWANNPYVRKAIHAQSEEITGEWERCTHRFNYDYQVHSVIEYHRNLTMKGYRALIYSGDMDLIVPFIGTEAWVRSLNYTILDDWRSWWVDQQVAGYTRLYKHNLTFATI
B8LL22______________MSSQRKFMKFVVNLFIAHIIISLISSVQLNCNGAPASARVKYFPGYHGNLNSEIYAGYVTVGEVNGIELFYYFVKSERNPAKDPLLLWLTGGPGCSSFTGFAYELGPMSFDLNNNSGNLPTLISNPHSWTKVSNIIFLDSPVGTGFSYSNTTTDYVTGDFKSVSDIHTFLIKWFEAFPEFLSNPIYVGGDSYSGMVVPLVVHEIANGNEAGIK-PTLNLKGYLVGNGGTDEAFDNAQVPFAHGKGLISDELYQAVKETCNNSYLYSTNASCLSNLLAMWKDLIGINTAHILDPICFPISKKQESLSSQKILTKRYEKLEVFDQLLESRRRMSSHGWFTKSSEDGYLTVQLQLGYQDRPCPTVDKYQLSYIWAKNPYVRKAIHAQSEEITGEWKRCTPRFKYNYDVRSVIEYHRNLTRKGYRALIYSGDHDLIVPFIGTQAWIRSLNYTIVDDWRPWWVDRQVAGYTRLYDNNLTFATV

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
438	33		66		1.0
442	33			66	1.0
443	33	66			1.0
446			33	66	1.0
645	16		83		0.994512
789	11		88		0.923564
791		88	11		0.923564
912	87		12		0.992554
1086	11		88		0.923564
1089	11		88		0.923564
1103	87	12			0.992554
1104		12	87		0.992554
1145	12			87	0.992554
1146	12		87		0.992554
1149			85	14	0.993533
1172		20		80	0.995493
1266		20	80		0.995493
1315	75		25		0.996473
1319		50		50	1.0
1322		25		75	0.996473
1349	16		83		0.994512
1355	83	16			0.994512
1356	83		16		0.994512
1359	16		83		0.994512
1362		83		16	0.994512
1368	83		16		0.994512
1410	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain