SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5348

Length: 3019 nt

UniGene Fasta

>sp_v3.0_unigene5348
CGTCGTGACCTTGGCTGTCACTCACTTCGTTTCTTGGCTCATTCTTCCGTCTTTCTTGTCTGGCTCGATTGGGATTCATTGTCCCCTTGGCCTTTGGTTGCGGAGGAGGAGAACGACGAGGTTTACCGTCTTTCCACGAACTCCAACTCTGGAACTCCAGATTGATTCTGTTGGATCGCTGTGTTCGCCTGGCCGAATCCCTTAAACCCTTGGGCTTTTCTGTTGACGCTGATCTCTGCTGTCTTGGGAGGCTGCCGGATTTGCGTCCTAGTTCGTTCATAGAAGGTCCCTGGTTTGCTCATCGGTTCTCCTTTGTATTGTTATTTGCGAAATGGATCTTCCGAGCTTGGCCGTTATCCTGCAGGCGGCGCTCAGTCCCAACCCTCAAGAGAGAAAGGCGGCAGAGGAGAGCCTCAATCAGTATCAGTACACACCTCAGCATCTTGTCAGACTTCTACATATAATAGTTGATGGAAGCTGTGATTTGGCTGTACGTCAAGTTGCAAGTATCCATTTCAAGAATTTTATAGGCAAAAATTGGGCACCTCATGAGCCTGGTGAGCAGCAGAAGATATCACCAGCTGATAAGGCCACGGTTAGAGAAAATTTGCTTGAGTTCATTGTTCGAGTTCCTTCTTTGTTGAGAGTGCAGCTAGGTGAGTGCCTTAAAACTATTATTAATGCAGACTATCCAGAGCATTGGCCTGCCCTCCTTACCTGGGTCAAGCGTAAATTTCAAGAACAGCAAGTATATGGTGCTTTATATGTGCTGAGAATTCTTTCAAGGAAGTACGAGTTCAAGTCAGAGGATGAGCGAACTTCTGTATATCTTATCATTGACGAAGCTTTTCCACCTTTACTTGACATTTTCAACCGCCTTGTGCAAATTCCGAGCCCTACAATAGAGATAGCAGAGCTGATCAAACTCATCTGCAAAATCTTCTGGTCATCCATATATCTAGAGGTCCCTAAGCAACTGTTTGATCCCAATGTCTTTAATGCTTGGATGGTCCTATTTTTAGCTATGCTGGAAAGGCCAGTTCCTACTGAGGGACAGCCAACTGACCCAGAACAACGGAAGTCTTGGGAATGGTGGAAAGTAAAGAAGTGGACCGTGCATATCATGAATCGGTTGTACACTCGCTTTGGAGATCCGAAGCTTTTAAAACCAGAGAACAAGCCTTTTGCTGAGATGTTTCAAAAGCATTATGCTGGGAAGATTTTAGAGTGTCATTTGAATCTGTTGAATGTAATTCGACAAGGTGGCTACCTTCCAGATAGGGTGACCAATCTTGTTCTTCAATATTTGAGTAGCAGTATTTCCAAGTCCAATACGTACCAGCTGTTAAAGCCAGAACTTGATATAGTGCTTTTTGAGATCATATTCCCTCTTATGTGTTTCAATGACAATGATGAGAAGCTTTGGCGTGAAGATCCTCATGAATATGTTAGGAAAGGTTATGACATAATTGAAGATCTGTATAGTCCTCGCACTGCATCCATTGATTTCATCACTGAGCTGGTTCGGAAACGTGGAAAAGAAAACCTCCAGAAATTCCTCACTTTTATTGTTGAAGTTTTTAGGAGGTATGATGAGGCAGCTCCAGGCTACAAACTCTATAGGCAGAAAGATGGTGCGCTTTTGGCAGTTGGGGCTTTATGTGATAAACTGAAGCAGACAGAACCATACAAATCTCAACTGGAGCAAATGCTAGTGCAACATGTTTTTCCCGAGTTTAGGAGTCAAGTTGGTCACTTGAGAGCGAAGGCTGCATGGGTTGCAGGTCAGTATGCAAGTATCAACTTTGCAGATCAGAGAAATTTCAGTGCAGCCTTACATAGTGTTGTAGCGGGTTTGCGAGATCCTGAGCTGCCAGTACGTGTAGATTCTGTATTTGCTCTTAGATCTTTTGTGGAGGCTTGCAAGGATTTGAATGAAATTAGGCCAATCTTACCACAACTGCTTGATGAGTTTTTCAAACTTATGAATGAAGTTGAGAATGAAGATCTTGTGTTCACTCTGGAAACTATTGTGGATAAGTTTGGGGAGGAGATGGCACCTTATGCCTTAGGGTTATGCCAGAATCTGGCTGCTGCATTTTGGAAGTGTATGCAATCTGCTGAAGCTGAGGAAGACCTAGATGAATCAGGTGCATTGGCTGCTGTTGGATGCTTGCGTGCCATAAGTACAATACTTGAATCTGTCAGCAGGCTTCCCCACCTTTTCCCTCAGGTGGAGCCTATTTTATTGCCCATCATGCAGAGGATGCTTACAACTGATGGTCAAGAGGTTTTTGAGGAGGTTTTGGAGATTGTATCTTACATGACATACTTCTCAGAGACCATTTCTTTGGAAATGTGGAGTCTTTGGCCTCTCATGATAAATGCATTGGATGATTGGGCTATAGATTTCTTTGAAAATATTCTCGTCCCATTGGATAATTACATATCTAGGAGCACTGAACATTTTCTTACATGCAAGGACCCTGACTACCAACAAAGTCTCTTTAAAGTGCTTTCCTCTGTAATGACAGATAAAAATATTGAAGATCATGATATTGAGCCAGCTCCCAAGCTTGTAGAAGCAGTGTTACAGAATTGTAAAGGTCGAGTTGATCATTGGGTTGAACCTTATCTTAGAATTACAATTGACAGGCTACGTCGAACTGAAAAGAAGTATTTGAAGGATTTGTTGCTTGAAGTGATTGCCAATGCTTTATACTACAACCCACAGCTGACTCTTAACATTCTGCAAAAATTGGGAGTAGCTACCGAAGTTTTCAATCTGTGGTTTCATATGCTTCAAGAAGTAAAGAAAAGTGGTCAGAAAGCGAATTTTAGAAGAGAGCATGACAAGAAAGTTTGCATTTTGGGGCTGACTTCACTCTTAACACTTCCTTCTGAACTTTTACCTGAAGAATCCTTTCGTCAAATATTCAGAGCTGTACTTGATCTGCTTGTTGCATATAAGGAGCAAGTTGCTGAAACAGCAAAGAATAATGAAGATGAAGATGATGAC

Ace file of the UniGene sp_v3.0_unigene5348

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Importin-7, putative n=3 Tax=rosids RepID=B9SP38_RICCO	-	-	78%
FL-Next	sp=Exportin-2; Arabidopsis thaliana (Mouse-ear cress).	-	-	20%
Sma3	Chromosome chr5 scaffold_67, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00033560001;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus, docking	GO:0000059	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Lipocalin	IPR002345	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G31660.1	SAD2, URM9 ARM repeat superfamily protein chr2:13464519-13471353 FORWARD LENGTH=1040	73%
RefSeq	Arabidopsis thaliana	NP_180724.2	Importin 7-like protein URM9 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002320447.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9ZPY7

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 896 - 972

Fln protein: MDLPSLAVILQAALSPNPQERKAAEESLNQYQYTPQHLVRLLHIIVDGSCDLAVRQVASIHFKNFIGKNWAPHEPGEQQKISPADKATVRENLLEFIVRVPSLLRVQLGECLKTIINADYPEHWPALLTWVKRKFQEQQVYGALYVLRILSRKYEFKSEDERTSVYLIIDEAFPPLLDIFNRLVQIPSPTIEIAELIKLICKIFWSSIYLEVPKQLFDPNVFNAWMVLFLAMLERPVPTEGQPTDPEQRKSWEWWKVKKWTVHIMNRLYTRFGDPKLLKPENKPFAEMFQKHYAGKILECHLNLLNVIRQGGYLPDRVTNLVLQYLSSSISKSNTYQLLKPELDIVLFEIIFPLMCFNDNDEKLWREDPHEYVRKGYDIIEDLYSPRTASIDFITELVRKRGKENLQKFLTFIVEVFRRYDEAAPGYKLYRQKDGALLAVGALCDKLKQTEPYKSQLEQMLVQHVFPEFRSQVGHLRAKAAWVAGQYASINFADQRNFSAALHSVVAGLRDPELPVRVDSVFALRSFVEACKDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWKCMQSAEAEEDLDESGALAAVGCLRAISTILESVSRLPHLFPQVEPILLPIMQRMLTTDGQEVFEEVLEIVSYMTYFSETISLEMWSLWPLMINALDDWAIDFFENILVPLDNYISRSTEHFLTCKDPDYQQSLFKVLSSVMTDKNIEDHDIEPAPKLVEAVLQNCKGRVDHWVEPYLRITIDRLRRTEKKYLKDLLLEVIANALYYNPQLTLNILQKLGVATEVFNLWFHMLQEVKKSGQKANFRREHDKKVCILGLTSLLTLPSELLPEESFRQIFRAVLDLLVAYKEQVAETAKNNEDEDDD

Protein Length: 897

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTCGTTTCTTGGCTCATTCTTCCGTCTTTCTTGTCTGGCTCGATTGGGATTCATTGTCCCCTTGGCCTTTGGTTGCGGAGGAGGAGAACGACGAGGTTTACCGTCTTTCCACGAACTCCAACTCTGGAACTCCAGATTGATTCTGTTGGATCGCTGTGTTCGCCTGGCCGAATCCCTTAAACCCTTGGGCTTTTCTGTTGACGCTGATCTCTGCTGTCTTGGGAGGCTGCCGGATTTGCGTCCTAGTTCGTTCATAGAAGGTCCCTGGTTTGCTCATCGGTTCTCCTTTGTATTGTTATTTGCGAA_-_ATGGATCTTCCGAGCTTGGCCGTTATCCTGCAGGCGGCGCTCAGTCCCAACCCTCAAGAGAGAAAGGCGGCAGAGGAGAGCCTCAATCAGTATCAGTACACACCTCAGCATCTTGTCAGACTTCTACATATAATAGTTGATGGAAGCTGTGATTTGGCTGTACGTCAAGTTGCAAGTATCCATTTCAAGAATTTTATAGGCAAAAATTGGGCACCTCATGAGCCTGGTGAGCAGCAGAAGATATCACCAGCTGATAAGGCCACGGTTAGAGAAAATTTGCTTGAGTTCATTGTTCGAGTTCCTTCTTTGTTGAGAGTGCAGCTAGGTGAGTGCCTTAAAACTATTATTAATGCAGACTATCCAGAGCATTGGCCTGCCCTCCTTACCTGGGTCAAGCGTAAATTTCAAGAACAGCAAGTATATGGTGCTTTATATGTGCTGAGAATTCTTTCAAGGAAGTACGAGTTCAAGTCAGAGGATGAGCGAACTTCTGTATATCTTATCATTGACGAAGCTTTTCCACCTTTACTTGACATTTTCAACCGCCTTGTGCAAATTCCGAGCCCTACAATAGAGATAGCAGAGCTGATCAAACTCATCTGCAAAATCTTCTGGTCATCCATATATCTAGAGGTCCCTAAGCAACTGTTTGATCCCAATGTCTTTAATGCTTGGATGGTCCTATTTTTAGCTATGCTGGAAAGGCCAGTTCCTACTGAGGGACAGCCAACTGACCCAGAACAACGGAAGTCTTGGGAATGGTGGAAAGTAAAGAAGTGGACCGTGCATATCATGAATCGGTTGTACACTCGCTTTGGAGATCCGAAGCTTTTAAAACCAGAGAACAAGCCTTTTGCTGAGATGTTTCAAAAGCATTATGCTGGGAAGATTTTAGAGTGTCATTTGAATCTGTTGAATGTAATTCGACAAGGTGGCTACCTTCCAGATAGGGTGACCAATCTTGTTCTTCAATATTTGAGTAGCAGTATTTCCAAGTCCAATACGTACCAGCTGTTAAAGCCAGAACTTGATATAGTGCTTTTTGAGATCATATTCCCTCTTATGTGTTTCAATGACAATGATGAGAAGCTTTGGCGTGAAGATCCTCATGAATATGTTAGGAAAGGTTATGACATAATTGAAGATCTGTATAGTCCTCGCACTGCATCCATTGATTTCATCACTGAGCTGGTTCGGAAACGTGGAAAAGAAAACCTCCAGAAATTCCTCACTTTTATTGTTGAAGTTTTTAGGAGGTATGATGAGGCAGCTCCAGGCTACAAACTCTATAGGCAGAAAGATGGTGCGCTTTTGGCAGTTGGGGCTTTATGTGATAAACTGAAGCAGACAGAACCATACAAATCTCAACTGGAGCAAATGCTAGTGCAACATGTTTTTCCCGAGTTTAGGAGTCAAGTTGGTCACTTGAGAGCGAAGGCTGCATGGGTTGCAGGTCAGTATGCAAGTATCAACTTTGCAGATCAGAGAAATTTCAGTGCAGCCTTACATAGTGTTGTAGCGGGTTTGCGAGATCCTGAGCTGCCAGTACGTGTAGATTCTGTATTTGCTCTTAGATCTTTTGTGGAGGCTTGCAAGGATTTGAATGAAATTAGGCCAATCTTACCACAACTGCTTGATGAGTTTTTCAAACTTATGAATGAAGTTGAGAATGAAGATCTTGTGTTCACTCTGGAAACTATTGTGGATAAGTTTGGGGAGGAGATGGCACCTTATGCCTTAGGGTTATGCCAGAATCTGGCTGCTGCATTTTGGAAGTGTATGCAATCTGCTGAAGCTGAGGAAGACCTAGATGAATCAGGTGCATTGGCTGCTGTTGGATGCTTGCGTGCCATAAGTACAATACTTGAATCTGTCAGCAGGCTTCCCCACCTTTTCCCTCAGGTGGAGCCTATTTTATTGCCCATCATGCAGAGGATGCTTACAACTGATGGTCAAGAGGTTTTTGAGGAGGTTTTGGAGATTGTATCTTACATGACATACTTCTCAGAGACCATTTCTTTGGAAATGTGGAGTCTTTGGCCTCTCATGATAAATGCATTGGATGATTGGGCTATAGATTTCTTTGAAAATATTCTCGTCCCATTGGATAATTACATATCTAGGAGCACTGAACATTTTCTTACATGCAAGGACCCTGACTACCAACAAAGTCTCTTTAAAGTGCTTTCCTCTGTAATGACAGATAAAAATATTGAAGATCATGATATTGAGCCAGCTCCCAAGCTTGTAGAAGCAGTGTTACAGAATTGTAAAGGTCGAGTTGATCATTGGGTTGAACCTTATCTTAGAATTACAATTGACAGGCTACGTCGAACTGAAAAGAAGTATTTGAAGGATTTGTTGCTTGAAGTGATTGCCAATGCTTTATACTACAACCCACAGCTGACTCTTAACATTCTGCAAAAATTGGGAGTAGCTACCGAAGTTTTCAATCTGTGGTTTCATATGCTTCAAGAAGTAAAGAAAAGTGGTCAGAAAGCGAATTTTAGAAGAGAGCATGACAAGAAAGTTTGCATTTTGGGGCTGACTTCACTCTTAACACTTCCTTCTGAACTTTTACCTGAAGAATCCTTTCGTCAAATATTCAGAGCTGTACTTGATCTGCTTGTTGCATATAAGGAGCAAGTTGCTGAAACAGCAAAGAATAATGAAGATGAAGATGATGAC

Fln Alignment:

Contig5348___LSPNPQERKAAEESLNQYQYTPQHLVRLLHIIVDGSCDLAVRQVASIHFKNFIGKNWAPHEPGEQQKISPADKATVRENLLEFIVRVPSLLRVQLGECLKTIINADYPEHWPALLTWVKRKFQEQ-------QVYGALYVLRILSRK--YEFKSEDERTSVYLIIDEAFPPLLDIFNRLVQI--------PSPTI--EIAELIKLICKIFWSSIYLEVPKQLFDPNVFNAWMVLFLAMLERPVPTEGQPTDPEQRKSWEWWKVKKWTVHIMNRLYTRFGDPKLLKPEN-KPFAEMFQKHYAGKILECHLNLLNVIRQGGYLP--DRVTNLVLQYLSSSISKSNTYQLLKPE--LDIVLFEIIFPLMCFNDNDEKLWREDPHEYVRKGYDIIEDLYSPRTASIDFITELVRKRGKENLQKFLTFIVEVFRRYDEAAPGYKLYRQKDGALLAVGALCDKLKQTEPYKSQL---EQMLVQHVFPEFRS---------QVGHLRAKAAW---VAGQYASINFADQRNF----SAALHSVVAGLRDPELPVRVDSVFALRSFVEACKDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFG-----EEMAPYALGLCQNLAAAFWKCMQSAEAEEDLDESGA-LAAVGCLRAISTILESVSRLPHLFPQVEPILLPIMQRMLTTDGQEVFEEVLEI------VSYMTYFSETISLEMW
Q9ZPY7______________LSPIPEPRRTAERALSDAADQANYGLAVLRLVAEPAIDEQTRHAAAVNFKNHLRSRWHPAGDSGISPIVDSEKEQIKTLIVSLMLSASPRIQSQLSEALTVIGKHDFPKAWPALLPELIANLQNAALAGDYVSVNGILGTASSIFKKFSYEYRTDALFVDLKYCLDNFAAPLTEIFLKTSSLIDSAASSGGSPPILKPLFESQRLCCTIFYSLNFQDLPE--FFEDHMKEWMGEFKKYLSSNYP----------------------ALESTEEGLTLVDDLRAAICENINHYIEKNEEEFQGFLNEFASVVWTLLRDVSKSPSRDQLATTAIKFL-TSVSTSVHHALFAGDNVIKEICQSIVIPNVSLRVEDEEIFEMNYIEFIRRDME-GSDVDTRRRIACELLKGLATNY-KTQVTEVVSLEIQRLLSSFSANPSAN-WKDKDCAIYLVVSLSTKKAGGASVSTDLIDVQNFFANIILPELQSRDVNSFPMLKAGSLKFLTMFRSHIPKPFAMQLFPELVRFLKAESNVVHSYAASCIEKLLLVKEEGA---RGNRYAAGDLS---PFLLQLMTNLFDALKFPESEENQYLMKCIMRVLGVADISAEVAGPCIGGLTSILSEVCKNPKNPIFNHYLFESVAVLVRRACERDISLISAFET---SLFPSLQMILANDITEFLPY-GFQLLAQLVELNRPTLSPNYMQIFLLLLSPESW

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
983	16		83		0.994512
984		83		16	0.994512
985	83		16		0.994512
986	83		16		0.994512
987		83	16		0.994512
1028	16			83	0.994512
1030			16	83	0.994512
1031	83		16		0.994512
1135		20		80	0.995493
1156	16			83	0.994512
1160	83		16		0.994512
1437		80		20	0.995493
1459			20	80	0.995493
1579	33			66	0.997452
1580		33		66	0.997452
1581	33		66		0.997452
1683	75		25		0.996473
1841	85		14		0.993533
1842			85	14	0.993533
1844		85	14		0.993533
1846			14	85	0.993533
1849	85	14			0.993533
1851	85			14	0.993533
1855		14		85	0.993533
1859	85	14			0.993533
1860	14		85		0.993533
1862			85	14	0.993533
1863		14	85		0.993533
1864	14		85		0.993533
1871	85	14			0.993533
1882		12		87	0.992554
1884		87		12	0.992554
1891		12	87		0.992554
1895	87		12		0.992554
1897	87	12			0.992554
1900		88	11		0.923564
1901	11			88	0.923564
1902	11	11	77		0.968132
1905		11		88	0.923564
1911		88	11		0.923564
1913		11		88	0.923564
1915		11	88		0.923564
2219		88		11	0.923564
2220	87		12		0.992554
2221		14	85		0.993533
2222	14	14	71		0.984337
2224		16		83	0.994512
2387	10	90			0.90298
2454			10	90	0.90298
2455	90		10		0.90298
2570	12			87	0.992554
2571		12	87		0.992554
2573			87	12	0.992554
2574		87		12	0.992554
2598			85	14	0.993533
2691	33			66	0.997452
2694	66		33		0.997452
2695	66		33		0.997452
2706	25	75			0.996473
2707	25			75	0.996473
2711	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain