SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5319

Length: 3507 nt

UniGene Fasta

>sp_v3.0_unigene5319
ATGGGGATCTGTGGGGAAGGGAAAAACCAAAAAAAGATGCGGATGCCATGGACAAGGATCCAATTGGGAAAGCAATCGGATCATGGCCGACAGAGGGGTAAGCCTCCCAGAGTTCTATCTATCCATCCAACTTCCCAGCCCTACACACAAACCCACTCCCCACACCTAAAATGACTCGTGAAAGCGCACCTATTAGCTGTTATACCAACAACAATAAACACATTTGTACTGGTAAGTACTGCAAGACCACTACCCGCTCTGCACAATCCTGGAACAGTGAAAGTAGGACAAGTAGGGCAGCCCGCTAAAATTTATTGCACTTTTCTTGACATTCCAGCTCTTCATTCGTTTCAATGCAATGCCCATCTGATCTGAAGCAGTGAAAGGCCCATCAAACTGTAACCAATAGTCATGGATGGTGGCTAGTTGTTTCCCGTGATTCTCTTCTTGCTATTTCTGGCGCCCAGCTTTTACAGAAGAAACGGTAGAAGAATCACGCGATCAAAGAACATATAATCATCTGCTGTTTTCTTGTCTTGTTTTGAACTTGAGACCCTGGCAGAAAGCAAAATCGGGTATTTGGGCGCTGAAACTATACTTTGTAAGTGGAGATGGGTAGTAAGTGGAGAAGAGCGAGAGAAGCGCTGGGTCTGCATCTATGCATCCTTGCTCCGGTTGAGAGGAATGAAAGGCCTACTCCGAATGAGACTGTTTCGACTCGGTCTAGTTCTTCCGATATAGCTCTTTTGGGAGGGGTACGGGAATCAATCGTGGGTTCTGTACAGTCTTCTCAGGTTTCTCCTGGCGGTTTGCATTCGAAACCCAGCGTCCGACTTTCTCCTAGCAGTTGTGCTATATGCCTTGAGGCAATAAAACCAGGTCAAGGGCATGCTTTATTCACAGCAGAGTGTTCTCACACTTTCCATTTTCCTTGCATTGCATCTAATGTGAGGCATGGGAATCTTGTATGCCCTGTTTGCCGTGCTAAATGGAATGAAGTTCCCTTGCTTGGTCCTCCAGCACCGCAAGTGTCGCCCATTAAGCCACGGAGATTAAATTCTTCAAATTGGTCACAGGAAACTGGCTGGACAACAGAATTACCCCGTTTGCAGACTCGCCACCCTCGCCATGAAGTTGTACCACATTCCTCCACTCGAGAACCAAGCATGTTTGATGATGATGAGCCCTTAGTACTGCCTCAAGCAAATTCTAATGAAACTAGAGAAAATAAATCACATGGACTCGATAATAATTCATTCAACGTATATGAAGGAAACAGTGGCGGTGCAAATAAAGATGATTCTAAAGTACTATATTTAGAATTATTTCCTGAGGTAGCTGCAATTCCTCAATCAGAGTTTCGAGACAAATTTACTGTGCTGGTTCATCTCAAATCCCCATCTTCTAATGCCTTCCAACCACATAATGAGCAATTCGATGGTGTTCAGAACACCATTGTTCGAGAAGAAGAGTTAGGCACTCAAAACTTTGCTTATTCAGAGAGCATAATAAGGAGCCCAGTCTGGGTACCTCATTCAATCAATGACAGAGCACCCATAGATCTTGTGACTGTTCTTGATGTGAGTGGGAGTATGGAAGGTACCAAATTAGCATTATTAAAGCGTGCAATGGGCTTTGTGATTAGGAATCTTAGCCCCACAGATCGTCTTTCAGTCGTTGCGTTCTCTTCCACTGCAAGACGATTGTTTCCACTTCGCTGCATGGTTGAGGAAGGCCGTCAGCAAGCATTGCAAGCAGTGGATTTACTTGTATCGAGTGGTGGAACCAACATTAGTGAGGGTTTGAGAAAGGGTGCCAAAGTGCTGGAAGATCGACGGGTGCGCAACCCAGTTTCTAGCATCATGTTACTGTCTGATGGACAGGACACTTACAACCTTACAAATCGATGGGCAGCAATAAGCATGAACTCCAGAACAGCTTTGGATTACCATTGCATGTTGCCAGGTTCAATAAGGCATGCCTCACAGAATGGGCTTGCTCAGATCCCTGTACATACATTTGGATTTGGGTCAGATCATGATTCTGCAACTATGCATTCCATAGCTGAGGCATCTGGAGGCACTTTTTCTTTCATAGAGACAGAGAATGTCATTCAAGATGCTTTTGCACAGTGTATTGGTGGGTTACTTAGTGTGATAATTCAAGATGTACAAGTGGAGATCACCTCTGCAAATTCGCAAGTACGACTGATTGCTATTCAAGCAGGTAGCTATGCAAGCAACATTATAGATGGAGGTCAACAAGGATCTGTAAAGATAGGAGACTTGTATGCAGAAGAGGAGAGGGATATACTGGTTGAAGTAAAGTTGCCAGCTGTTTCAAGCTCTGTTAACACTAGCAGCTGTGATGACATGAAGGTGGTGAATGTGACTTGCACCTATAGAGATCCTGTTTCACAACAAGCAAATCAAACCATGGTAAGTGAGCTTTACATTAAACGTCCAGAAGCAACTAGTATTCAGCAACAGACTGTCTGTCTTGAGGTTGACCGGCAAAGAAACCGTCTCTGCACTGCAAATTCCATTGCCGAGGCCAGAGCATTTGCAGATAGGGGTGATTTATCAAGAGCACAATTAATTTTAGGCACAAGGAGAGCTGCTGTTCAAGGATCTCCTGCATCTCAGGCAGGAGACCAACTTTGCAGAGTGCTAGAGTCTGAGTTGACAGAGATGCAAGAGAGAATGGCAAATATGCAGTTATATGAGAACTCAGGGCGTGCATATGTTCTGTCAGCACATAGTTCTCACTCTCAACAGAGAGCTACCACACGGGGATACTCCGATGATAGCACAGGTTGTGACTACAAGACGTCCAAAATGGTAGACATGCTGTTGCGTTCACAGACAATGTGCCCTAGACCTCAAGCTACTGTGTCAAGGACGCTGCTCCCTTCAAGATCTTTCCCATTGCCAGAAGCAAGGTCCTCTCGATAAGAAAATATCATCATTAATCGTAACTTCCTGAATGGAAGGAATCGTGTGAGAGAGCTCAGAATTCTGAGGGCCGTAAAAGTGAAGCCAGTTATACTGGTGTTGCTAAGTCAGTTCTAGCACTGATGGATATGTACTTGTGAATTGCTGGTTCTTTCTTTCTACCTGAGCAAAACCAGCCTGTATAGAATCTAGATCATATTTGTTGTTTGAGATGACATCTAATCAGGAGGAAATATGTGCAGATATTTTTTTAGATTTTTATGATGAAGCAAATCATTTATAGGTTTGGTTCTTTGGTTTGCCATTTTAGTAGTATGATACTTGTCTGTCCTAATACTATCAGCTTTTGTATTCTCTGGATTTGTGAATAGAATTTGTATCCTGTTCGATGAAAGGAGACAGGTTTTTAAGGTTGTTGCGAGTCAATTGAATACTTTAAATGAAGTCCAAAAGCTAGCACTGGCTTCATATAATGCTCTCAAGTACACCTATTGGATTGAAACCTGATTTTATGACATAAAGTAACACCTATCGGATGAAACTTTCTTTCCTC

Ace file of the UniGene sp_v3.0_unigene5319

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9SVA9_RICCO	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%

Source	Gene names
Sma3	At2g38970; At3g54780; At5g60710; B1099H05.5; GSVIVT00018177001; GSVIVT00024560001; GSVIVT00035545001; LOC_Os03g04890; OJ1111_C07.20; OJ1163_G08.12; OJ1212_C01.33; OJ1372_D06.16; OJ1499_A07.34; OSIGBa0101P20.12; OSJNBa0043L24.22; OSJNBa0049O12.7; Os02g0619

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G60710.1	Zinc finger (C3HC4-type RING finger) family protein chr5:24410953-24414849 REVERSE LENGTH=704	46%
RefSeq	Arabidopsis thaliana	NP_200879.1	C3H4 type zinc finger protein [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002314287.1	predicted protein, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS55

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 23 aas, your sequence is shorter than subject: 781 - 829

Fln protein: MGSKWRRAREALGLHLCILAPVERNERPTPNETVSTRSSSSDIALLGGVRESIVGSVQSSQVSPGGLHSKPSVRLSPSSCAICLEAIKPGQGHALFTAECSHTFHFPCIASNVRHGNLVCPVCRAKWNEVPLLGPPAPQVSPIKPRRLNSSNWSQETGWTTELPRLQTRHPRHEVVPHSSTREPSMFDDDEPLVLPQANSNETRENKSHGLDNNSFNVYEGNSGGANKDDSKVLYLELFPEVAAIPQSEFRDKFTVLVHLKSPSSNAFQPHNEQFDGVQNTIVREEELGTQNFAYSESIIRSPVWVPHSINDRAPIDLVTVLDVSGSMEGTKLALLKRAMGFVIRNLSPTDRLSVVAFSSTARRLFPLRCMVEEGRQQALQAVDLLVSSGGTNISEGLRKGAKVLEDRRVRNPVSSIMLLSDGQDTYNLTNRWAAISMNSRTALDYHCMLPGSIRHASQNGLAQIPVHTFGFGSDHDSATMHSIAEASGGTFSFIETENVIQDAFAQCIGGLLSVIIQDVQVEITSANSQVRLIAIQAGSYASNIIDGGQQGSVKIGDLYAEEERDILVEVKLPAVSSSVNTSSCDDMKVVNVTCTYRDPVSQQANQTMVSELYIKRPEATSIQQQTVCLEVDRQRNRLCTANSIAEARAFADRGDLSRAQLILGTRRAAVQGSPASQAGDQLCRVLESELTEMQERMANMQLYENSGRAYVLSAHSSHSQQRATTRGYSDDSTGCDYKTSKMVDMLLRSQTMCPRPQATVSRTLLPSRSFPLPEARSSR*

Protein Length: 782

Fln nts: ATGGGGATCTGTGGGGAAGGGAAAAACCAAAAAAAGATGCGGATGCCATGGACAAGGATCCAATTGGGAAAGCAATCGGATCATGGCCGACAGAGGGGTAAGCCTCCCAGAGTTCTATCTATCCATCCAACTTCCCAGCCCTACACACAAACCCACTCCCCACACCTAAAATGACTCGTGAAAGCGCACCTATTAGCTGTTATACCAACAACAATAAACACATTTGTACTGGTAAGTACTGCAAGACCACTACCCGCTCTGCACAATCCTGGAACAGTGAAAGTAGGACAAGTAGGGCAGCCCGCTAAAATTTATTGCACTTTTCTTGACATTCCAGCTCTTCATTCGTTTCAATGCAATGCCCATCTGATCTGAAGCAGTGAAAGGCCCATCAAACTGTAACCAATAGTCATGGATGGTGGCTAGTTGTTTCCCGTGATTCTCTTCTTGCTATTTCTGGCGCCCAGCTTTTACAGAAGAAACGGTAGAAGAATCACGCGATCAAAGAACATATAATCATCTGCTGTTTTCTTGTCTTGTTTTGAACTTGAGACCCTGGCAGAAAGCAAAATCGGGTATTTGGGCGCTGAAACTATACTTTGTAAGTGGAG_-_ATGGGTAGTAAGTGGAGAAGAGCGAGAGAAGCGCTGGGTCTGCATCTATGCATCCTTGCTCCGGTTGAGAGGAATGAAAGGCCTACTCCGAATGAGACTGTTTCGACTCGGTCTAGTTCTTCCGATATAGCTCTTTTGGGAGGGGTACGGGAATCAATCGTGGGTTCTGTACAGTCTTCTCAGGTTTCTCCTGGCGGTTTGCATTCGAAACCCAGCGTCCGACTTTCTCCTAGCAGTTGTGCTATATGCCTTGAGGCAATAAAACCAGGTCAAGGGCATGCTTTATTCACAGCAGAGTGTTCTCACACTTTCCATTTTCCTTGCATTGCATCTAATGTGAGGCATGGGAATCTTGTATGCCCTGTTTGCCGTGCTAAATGGAATGAAGTTCCCTTGCTTGGTCCTCCAGCACCGCAAGTGTCGCCCATTAAGCCACGGAGATTAAATTCTTCAAATTGGTCACAGGAAACTGGCTGGACAACAGAATTACCCCGTTTGCAGACTCGCCACCCTCGCCATGAAGTTGTACCACATTCCTCCACTCGAGAACCAAGCATGTTTGATGATGATGAGCCCTTAGTACTGCCTCAAGCAAATTCTAATGAAACTAGAGAAAATAAATCACATGGACTCGATAATAATTCATTCAACGTATATGAAGGAAACAGTGGCGGTGCAAATAAAGATGATTCTAAAGTACTATATTTAGAATTATTTCCTGAGGTAGCTGCAATTCCTCAATCAGAGTTTCGAGACAAATTTACTGTGCTGGTTCATCTCAAATCCCCATCTTCTAATGCCTTCCAACCACATAATGAGCAATTCGATGGTGTTCAGAACACCATTGTTCGAGAAGAAGAGTTAGGCACTCAAAACTTTGCTTATTCAGAGAGCATAATAAGGAGCCCAGTCTGGGTACCTCATTCAATCAATGACAGAGCACCCATAGATCTTGTGACTGTTCTTGATGTGAGTGGGAGTATGGAAGGTACCAAATTAGCATTATTAAAGCGTGCAATGGGCTTTGTGATTAGGAATCTTAGCCCCACAGATCGTCTTTCAGTCGTTGCGTTCTCTTCCACTGCAAGACGATTGTTTCCACTTCGCTGCATGGTTGAGGAAGGCCGTCAGCAAGCATTGCAAGCAGTGGATTTACTTGTATCGAGTGGTGGAACCAACATTAGTGAGGGTTTGAGAAAGGGTGCCAAAGTGCTGGAAGATCGACGGGTGCGCAACCCAGTTTCTAGCATCATGTTACTGTCTGATGGACAGGACACTTACAACCTTACAAATCGATGGGCAGCAATAAGCATGAACTCCAGAACAGCTTTGGATTACCATTGCATGTTGCCAGGTTCAATAAGGCATGCCTCACAGAATGGGCTTGCTCAGATCCCTGTACATACATTTGGATTTGGGTCAGATCATGATTCTGCAACTATGCATTCCATAGCTGAGGCATCTGGAGGCACTTTTTCTTTCATAGAGACAGAGAATGTCATTCAAGATGCTTTTGCACAGTGTATTGGTGGGTTACTTAGTGTGATAATTCAAGATGTACAAGTGGAGATCACCTCTGCAAATTCGCAAGTACGACTGATTGCTATTCAAGCAGGTAGCTATGCAAGCAACATTATAGATGGAGGTCAACAAGGATCTGTAAAGATAGGAGACTTGTATGCAGAAGAGGAGAGGGATATACTGGTTGAAGTAAAGTTGCCAGCTGTTTCAAGCTCTGTTAACACTAGCAGCTGTGATGACATGAAGGTGGTGAATGTGACTTGCACCTATAGAGATCCTGTTTCACAACAAGCAAATCAAACCATGGTAAGTGAGCTTTACATTAAACGTCCAGAAGCAACTAGTATTCAGCAACAGACTGTCTGTCTTGAGGTTGACCGGCAAAGAAACCGTCTCTGCACTGCAAATTCCATTGCCGAGGCCAGAGCATTTGCAGATAGGGGTGATTTATCAAGAGCACAATTAATTTTAGGCACAAGGAGAGCTGCTGTTCAAGGATCTCCTGCATCTCAGGCAGGAGACCAACTTTGCAGAGTGCTAGAGTCTGAGTTGACAGAGATGCAAGAGAGAATGGCAAATATGCAGTTATATGAGAACTCAGGGCGTGCATATGTTCTGTCAGCACATAGTTCTCACTCTCAACAGAGAGCTACCACACGGGGATACTCCGATGATAGCACAGGTTGTGACTACAAGACGTCCAAAATGGTAGACATGCTGTTGCGTTCACAGACAATGTGCCCTAGACCTCAAGCTACTGTGTCAAGGACGCTGCTCCCTTCAAGATCTTTCCCATTGCCAGAAGCAAGGTCCTCTCGATAA___GAAAATATCATCATTAATCGTAACTTCCTGAATGGAAGGAATCGTGTGAGAGAGCTCAGAATTCTGAGGGCCGTAAAAGTGAAGCCAGTTATACTGGTGTTGCTAAGTCAGTTCTAGCACTGATGGATATGTACTTGTGAATTGCTGGTTCTTTCTTTCTACCTGAGCAAAACCAGCCTGTATAGAATCTAGATCATATTTGTTGTTTGAGATGACATCTAATCAGGAGGAAATATGTGCAGATATTTTTTTAGATTTTTATGATGAAGCAAATCATTTATAGGTTTGGTTCTTTGGTTTGCCATTTTAGTAGTATGATACTTGTCTGTCCTAATACTATCAGCTTTTGTATTCTCTGGATTTGTGAATAGAATTTGTATCCTGTTCGATGAAAGGAGACAGGTTTTTAAGGTTGTTGCGAGTCAATTGAATACTTTAAATGAAGTCCAAAAGCTAGCACTGGCTTCATATAATGCTCTCAAGTACACCTATTGGATTGAAACCTGATTTTATGACATAAAGTAACACCTATCGGATGAAACTTTCTTTCCTC

Fln Alignment:

Contig5319___MGSKWRRAREALGLHLCILAPVE--------------------------------RNERPTPNETVSTRSSSSDIALLGGVREXXXXXXXXXXXXXXXLHS-------KPSVRLSPSSCAICLEAIKPGQGHALFTAECSHTFHFPCIASNVRHGNLVCPVCRAKWNEVPLLGP---------------PAPQVSPIKPRRLNSSNWSQETGWTTELPRLQTRHPRHEVVP----------HSSTREPSMFDDDEPL---VLPQAN-----SNETRENKSHGLDNNSFNVYEGNSGGANKDDSKVLYLELFPEVAAIPQSEFRDKFTVLVHLKSPSSNAFQPHNEQFDGVQNTIVREEELGTQNFAYSE-SIIRSPVWVPHSINDRAPIDLVTVLDVSGSMEGTKLALLKRAMGFVIRNLSPTDRLSVVAFSSTARRLFPLRCMVEEGRQQALQAVDLLVSSGGTNISEGLRKGAKVLEDRRVRNPVSSIMLLSDGQDTYNLTNRWAAISMNSRTALDYHCMLPGSIRHASQNGLAQIPVHTFGFGSDHDSATMHSIAEASGGTFSFIETENVIQDAFAQCIGGLLSVIIQDVQVEITSANSQVRLIAIQAGSYASNIIDGGQQGSVKIGDLYAEEERDILVEVKLPAVSSSVNTSSCDDMKVVNVTCTYRDPVSQQANQTMVSELYIKRPEATSIQQQTVCLEVDRQRNRLCTANSIAEARAFADRGDLSRAQLILGTRRAAVQGSPASQAGD-QLCRVLESELTEMQERMANMQLYENSGRAYVLSAHSSHSQQRATTRGYSDDSTGCDYKTSKMVDMLLRSQTM
C0PS55______________MGTGWRRARNALGLSVCASVPTDLDDLQSGGPRFELENRRSAGLQIQHNHAESPRRQQISSPRENCQPLDSPSSDVQSPRLRNIQTAVSPEAVSKSSSPRSPSRLNLIRNGIRTPKGCCAICLETMKPGHGHAIFTAECSHSFHFPCIASNVRHGNLICPVCRAKWKEVPWQVPVVEAENTDIGTTATTPTVRNGNLQIRRRPNNVRDDEAALRTAEEEQRRLDPVLRILDDSIASFRGHRQSCSQEPTVYDDDEPLDSNLRPNEGQTSLLTDDDREFEFKGL----FVDHEGTSDRA-AGNARKMRIALYPEVEAVAAGEACENFTVLVHVKAPSAS-------------------EASKKQNYEDCEGNMVKDP-------GCRAPIDLVTVLDVSGSMSGTKLALLKRAMAFVISNLSPEDRLSVVVFSSTAKRVFSLKRMTPDGQRAANRVVERLLCTGGTNIAEGLRKGAKVLEDRRQRNPVASIMLLSDGQDTYSLSSRGVVLFPSDEQR--------RSARQSTRYGHVQIPVHAFGFGVDHDAATMHAISEVSGGTFSFIQAESLVQDAFAQCIGGLLSVVVQDVRVTV-SACAGTKLKSFHAGSYETCVAEDGSHGTVNLGDLYAEEERDILVELKFPAVKSASN-----PMNLISVGCFFKDPVSQRSFHSREQSFSILRPESTDGLPVALNLEVEKERNRLRTAQAIAEARTLADQGDMSGAQRVLQNAKIELQ---QTRTGDHSLSLALEAEITEIQARMTNIQTYERSGRAFVLSAQSSHFRQRATTRGESFESYSREYQTPSMADMVMRSQTL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1725	33		66		0.997452
1817	16		83		0.994512
1818	16		83		0.994512
1821		83		16	0.994512
1863	14		85		0.993533
1864		85		14	0.993533
1865	85		14		0.993533
2027	11		88		0.923564
2028		11	88		0.923564
2251	16			83	0.994512
2254	83		16		0.994512
2255			83	16	0.994512
2259	12		87		0.992554
2261			87	12	0.992554
2327	12		87		0.992554
2328		12		87	0.992554
2330	87			12	0.992554
2331	87			12	0.992554
2430	11	88			0.923564
2431	88	11			0.923564
2433	88			11	0.923564
3179		18		81	0.999994
3204	20			40	1.0
3224	75		25		0.996473
3285		10		89	0.999919
3373	11	11		77	0.968132
3374		12		87	0.992554
3407	25		25		0.995533
3456		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1172	1183	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain