SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5315

Length: 2262 nt

UniGene Fasta

>sp_v3.0_unigene5315
CGGTTCATCCTGCGTTATGTCATCGTTGGTCATAAACCCCAGGGTTTAAGTTGTCTCATCACCCTCTGCCTGACGCAGAGTAAGCGTGAGTGACCTCCATTATTTCACTGCTACCATAATATACAGAAAATCTCCTAGAATATACAGAAAAGACCTCGAAATGGCGGACAATAACGTCGGCGACTTCATACCACTTGATCGACAAGAGTACCCTTCAAAACCCGCTCCAGGTGCCGTTGACTCGAGCTTCTGGAAATCCTTCAAGAAGAAGGAAGTTTCCCGGCAGATTGCAGGCGTTACTTGCATCAATTTTTGCCCTGAACCTCCTCACGATTTCGCAGTTACATCGTCTACCCGGGTACATATCTATGACGGTAACTCTTGTAAGCTCAAGAAGACAATCACGAAGTTTAAAGATGTGGCATATTCAGGAGTATTTCGTTCTGATGGACAGATCATTGCTGCTGGGGGTGAGACAGGGGTCATTCAGGTCTTCAATGCAAAGTCTCAAATGGTTCTCCGGCAACTGAAGGGGCATGGCAGGCCTGTTCGAGTTGTAAGGTATTCTCCACAGGACAAACTTCATCTACTTTCAGGTGGTGATGATAGCATGGTCAAGTGGTGGGATATCACAACCCAGGAAGAGTTACTAAATCTAGAAGGGCATAAGGACTATGTTCGCTGTGGTGCTGCAAGTCCATCGAGTGTTAATTTATGGGCTACAGGTTCATATGATCACACAGTACGGCTGTGGGACTTGCGCAACTCAAAGACTGTTTTGCAATTAAAGCATGGGAAACCACTGGAAGATGTTTTATTTTTTCCATCTGGTGGATTGCTGGCCACCGCAGGAGGTAACATAGTGAAGGTATGGGACATTCTTGGAGGAGGACGACCCATACACACAATGGAAAGCCATCAAAAGACTGTCATGGCTATGTGTATTTCAAAAGTACCCAGGTTGGGCCAGGCTTTGGGTGATGCACCTTCTCGTCTTGTTACTGCATCACTAGATGGATATATGAAAGTTTTTGATCTTGATCATTTTAAGGTCACCCATTCTGCAAGGTATCCAGCTCCAATTCTATCAATGGGCATATCCTCTTTGTGTAGGACAATGGCAGTAGGAACCTCATCTGGGCTTCTTTTCATCCGCCAGAGGAAGGGGCAAATAGAAGATAAGCTACATTCAGATTCATCAAGTCTTCAAGTAAATCCAATTAATGATGAAAAGGATTCCGCTGTTTTGAAGCCCAATCAATATCGTTATTTTTTACGTGGTCGGAGTGAAAAACCTTCTGAAGGAGATTATGTTGTGAAAGGAATGGCAAAAGTGTATTTCCGAGAGTATGATAAAGATTTACGTCACTTCAATCATTCAAAAGCTTTGGTTTCTGCTCTAAAAGCTGCAGACTCCAAGGGTACAGTAGCTGTCATAGAAGAATTAGTTGCTAGAAAGAGGCTGATACAAACTTTGTCAATTCTCAATTTGGACGAGCTCGAGTTGCTAATCAATTTTTTATCCAGGTTTATTCTTGTACCAAAATATTCAAGATTTCTCATTTCCCTTACAGATAGGGTTCTGGATGCACGTGCAGTAGATCTTGGAAAGTCAGAAAATATTAAAAAACAGATTACAGACCTGAAGGGAATAGTTGTTCAGGAGCTTCGAGTGCAGCAGTCCATGCAAGAATTGCAAGGGATTATTGAGCCACTAATTCGAGCTTCTGCTCGATAAATGATCTAAATGGAGAGTTTTATCCATTACATGAATGAGTATGTCACCTTTCGTGCTCCACCTATTGATTTTTATTTTTGCAGCCTAGAGAAAAAAGTATTTATCACAAAATGCTGAAGCATTTTTGTGAGACTTTGTAGTTAATGTTGGTTCAAGGTTTCATGTTCTCTTGTAATATTTCTGTTTTAGTGGGGCTAGCTGGAATGGCATGTTCATCTATGGAAGAAGAAACAGTGGAATTATTTCATTATTTCTCATCTCTTGTTTTTGATGTTCCCCTCATTCAGTTTGAGCCCTTGTAACATAATGTTCGGTCAATGGCATGGCCATTGAAACAATTTTGGTCATGTGACGGGGATACAGAAAATTTGTATCTAAGTATCTATACTTATCTTCCAAGTATAGAAGCTTAGTGAGTCTTATTAGTTCTTAAAATACTAAAATTTCCGCGATATTTTGCATATATATCTAAATTTATAAGGATTTTATATTGTTCCTAGAAAACTTTAGCCATTTTATAAATT

Ace file of the UniGene sp_v3.0_unigene5315

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] gb\|AAC63653.1\| unknown protein [Arabidopsis thaliana] gb\|AAM15129.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10921.1\| transducin family protein / WD-40 repeat family prote	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	Gene names
Sma3	At2g47990; CHLREDRAFT_117285; GSVIVT00023613001; OSJNBa0066H10.103; Os07g0224900; OsI_25407; P0668C05.122; POPTRDRAFT_644959; POPTRDRAFT_774857; RCOM_0959780; VITISV_016665;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	megagametogenesis	GO:0009561	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A875

Fln msg: your sequence is longer than subject: 526 - 354

Fln protein: MADNNVGDFIPLDRQEYPSKPAPGAVDSSFWKSFKKKEVSRQIAGVTCINFCPEPPHDFAVTSSTRVHIYDGNSCKLKKTITKFKDVAYSGVFRSDGQIIAAGGETGVIQVFNAKSQMVLRQLKGHGRPVRVVRYSPQDKLHLLSGGDDSMVKWWDITTQEELLNLEGHKDYVRCGAASPSSVNLWATGSYDHTVRLWDLRNSKTVLQLKHGKPLEDVLFFPSGGLLATAGGNIVKVWDILGGGRPIHTMESHQKTVMAMCISKVPRLGQALGDAPSRLVTASLDGYMKVFDLDHFKVTHSARYPAPILSMGISSLCRTMAVGTSSGLLFIRQRKGQIEDKLHSDSSSLQVNPINDEKDSAVLKPNQYRYFLRGRSEKPSEGDYVVKGMAKVYFREYDKDLRHFNHSKALVSALKAADSKGTVAVIEELVARKRLIQTLSILNLDELELLINFLSRFILVPKYSRFLISLTDRVLDARAVDLGKSENIKKQITDLKGIVVQELRVQQSMQELQGIIEPLIRASAR*

Protein Length: 527

Fln nts: CGGTTCATCCTGCGTTATGTCATCGTTGGTCATAAACCCCAGGGTTTAAGTTGTCTCATCACCCTCTGCCTGACGCAGAGTAAGCGTGAGTGACCTCCATTATTTCACTGCTACCATAATATACAGAAAATCTCCTAGAATATACAGAAAAGACCTCGAA_-_ATGGCGGACAATAACGTCGGCGACTTCATACCACTTGATCGACAAGAGTACCCTTCAAAACCCGCTCCAGGTGCCGTTGACTCGAGCTTCTGGAAATCCTTCAAGAAGAAGGAAGTTTCCCGGCAGATTGCAGGCGTTACTTGCATCAATTTTTGCCCTGAACCTCCTCACGATTTCGCAGTTACATCGTCTACCCGGGTACATATCTATGACGGTAACTCTTGTAAGCTCAAGAAGACAATCACGAAGTTTAAAGATGTGGCATATTCAGGAGTATTTCGTTCTGATGGACAGATCATTGCTGCTGGGGGTGAGACAGGGGTCATTCAGGTCTTCAATGCAAAGTCTCAAATGGTTCTCCGGCAACTGAAGGGGCATGGCAGGCCTGTTCGAGTTGTAAGGTATTCTCCACAGGACAAACTTCATCTACTTTCAGGTGGTGATGATAGCATGGTCAAGTGGTGGGATATCACAACCCAGGAAGAGTTACTAAATCTAGAAGGGCATAAGGACTATGTTCGCTGTGGTGCTGCAAGTCCATCGAGTGTTAATTTATGGGCTACAGGTTCATATGATCACACAGTACGGCTGTGGGACTTGCGCAACTCAAAGACTGTTTTGCAATTAAAGCATGGGAAACCACTGGAAGATGTTTTATTTTTTCCATCTGGTGGATTGCTGGCCACCGCAGGAGGTAACATAGTGAAGGTATGGGACATTCTTGGAGGAGGACGACCCATACACACAATGGAAAGCCATCAAAAGACTGTCATGGCTATGTGTATTTCAAAAGTACCCAGGTTGGGCCAGGCTTTGGGTGATGCACCTTCTCGTCTTGTTACTGCATCACTAGATGGATATATGAAAGTTTTTGATCTTGATCATTTTAAGGTCACCCATTCTGCAAGGTATCCAGCTCCAATTCTATCAATGGGCATATCCTCTTTGTGTAGGACAATGGCAGTAGGAACCTCATCTGGGCTTCTTTTCATCCGCCAGAGGAAGGGGCAAATAGAAGATAAGCTACATTCAGATTCATCAAGTCTTCAAGTAAATCCAATTAATGATGAAAAGGATTCCGCTGTTTTGAAGCCCAATCAATATCGTTATTTTTTACGTGGTCGGAGTGAAAAACCTTCTGAAGGAGATTATGTTGTGAAAGGAATGGCAAAAGTGTATTTCCGAGAGTATGATAAAGATTTACGTCACTTCAATCATTCAAAAGCTTTGGTTTCTGCTCTAAAAGCTGCAGACTCCAAGGGTACAGTAGCTGTCATAGAAGAATTAGTTGCTAGAAAGAGGCTGATACAAACTTTGTCAATTCTCAATTTGGACGAGCTCGAGTTGCTAATCAATTTTTTATCCAGGTTTATTCTTGTACCAAAATATTCAAGATTTCTCATTTCCCTTACAGATAGGGTTCTGGATGCACGTGCAGTAGATCTTGGAAAGTCAGAAAATATTAAAAAACAGATTACAGACCTGAAGGGAATAGTTGTTCAGGAGCTTCGAGTGCAGCAGTCCATGCAAGAATTGCAAGGGATTATTGAGCCACTAATTCGAGCTTCTGCTCGATAA___ATGATCTAAATGGAGAGTTTTATCCATTACATGAATGAGTATGTCACCTTTCGTGCTCCACCTATTGATTTTTATTTTTGCAGCCTAGAGAAAAAAGTATTTATCACAAAATGCTGAAGCATTTTTGTGAGACTTTGTAGTTAATGTTGGTTCAAGGTTTCATGTTCTCTTGTAATATTTCTGTTTTAGTGGGGCTAGCTGGAATGGCATGTTCATCTATGGAAGAAGAAACAGTGGAATTATTTCATTATTTCTCATCTCTTGTTTTTGATGTTCCCCTCATTCAGTTTGAGCCCTTGTAACATAATGTTCGGTCAATGGCATGGCCATTGAAACAATTTTGGTCATGTGACGGGGATACAGAAAATTTGTATCTAAGTATCTATACTTATCTTCCAAGTATAGAAGCTTAGTGAGTCTTATTAGTTCTTAAAATACTAAAATTTCCGCGATATTTTGCATATATATCTAAATTTATAAGGATTTTATATTGTTCCTAGAAAACTTTAGCCATTTTATAAATT

Fln Alignment:

Contig5315___GSYDHTVRLWDLRNSKTVLQLKHGKPLEDVLFFPSGGLLATAGGNIVKVWDILGGGRPIHTMESHQKTVMAMCISKVPRLGQALGDAPSRLVTASLDGYMKVFDLDHFKVTHSARYPAPILSMGISSLCRTMAVGTSSGLLFIRQRKGQIEDKLHSDSSSLQVNPINDE---KDSAVLKPNQYRYFLRGRSEKPSEGDYVVKGMAKVYFREYDKDLRHFNHSKALVSALKAADSKGTVAVIEELVARKRLIQTXXXXXXXXXXXXXXXXXRFILVPKYSRFLISLTDRVLDARAVDLGKSENIKKQITDLKGIVVQELRVQQSMQELQGIIEPLIRASAR
D5A875______________GSYDHTVRLWDLRNSKTVLQFKHGKPLEDVLFFPSGGLLATAGGNIVKIWDILGGGRPIHTMESHQKTVMSMCISKVPKSRQALGDAPSRLVTASLDGYMKVFDLDHFKVTHSAKYPAPILSMGISSLCRTMAIGTSSGLLFIRQRKGQIEDNIPLDSPGLQVNQVEDSLSGKDGPVVKSNQYRYFLRGRSEKPSGGDYYVKGMAKVYFRDYDKELRHFQHSKALVSALKAADSKGTIAVIEELVARKRLMQSLSILNLDELELLISFLSKFILVPKYSRFLIALTDRVLDARAVDLEKSENIKKQIADLKGVVIQELRVQQSMQELQGIIEPLIRASAR

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1233	75		25		0.996473
1249		75	25		0.996473
1353	88		11		0.923564
1374	90		10		0.90298
1391		10	90		0.90298
1479	11	88			0.923564
1502	12		87		0.992554
1513		16		83	0.994512
1598	33		66		0.997452
1705			16	83	0.994512
1706	83		16		0.994512
1707			16	83	0.994512
1806	71		28		1.0
1837	90	10			0.90298
1838			10	90	0.90298
1840		10		90	0.90298
1841	90		10		0.90298
1843		90	10		0.90298
1846	90	10			0.90298
1847	90			10	0.90298
1848	90			10	0.90298
1855	90	10			0.90298
1857		10	90		0.90298
1888	10		90		0.90298
2193		14		85	0.993533
2194	14			85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain