SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5018

Length: 3183 nt

UniGene Fasta

>sp_v3.0_unigene5018
TGGTATTGTTTTCTAGTACTTGGGTAATGCATTAATGATAAAACACTGGTCTATAAATACACCATTCCGGAGCGATCTCTGTTTCCAACTGCATATTCATTTGATAGAGTATTCGGGAGTGAAGCCTCAACAGATGAGGTGTATGAGGATGGGGCAAAGGAGGTGGCTCTTTCCGCTCTCAGCGGTCTCAATGCAACAATATTTGCATATGGGCAGACCAGCAGTGGAAAGACGTATACGATGAGGGGCATCACAGATCGTGCTGTGATGGATATTTACAACTATATTGACAAGCACTCGGAACGAGTATTTGTCTTAAAGTTTTCTGCAATGGAAATTTATAACGAAGTGGTGAAGGATCTCCTCGCTTCTTCTGAAAACAGTGGCCCTCTTCGGATTCTGGACGATCCAGAGAGGGGGACAGTTGTGGAGAAATTGGTTGAAGAAAGGGTGCAGGATAAAGATCATCTGCAAAAGCTTTTGAGTATATGTGAAGCTCACAGACAGGTCGGAGAGACTTCTCTGAACGAAGCAAGTTCCAGATCTCATCAAATTGTTAGACTGACAATTGAAAGCTCTGTTCGAGAAACACGACCAGAAGACAACACGTCGAGCTCTTTAGTCGCGAGTTTGAACCTTGTTGATCTTGCAGGGAGTGAGCGCGCATCTCAATCTCTTTCAGCAGGAGTTAGATTGAAGGAAGGTTGCCATATTAATCGCAGCTTGCTTACCCTGGGCACTGTGATCAGGAAGCTCAGTGGAAACAATAAAATTAGGAATGGTCACATTCCATACCGAGATTCTAAACTCACCCGAATTCTTCAACATGCATTGGGAGGCAATGCAAGGACAGCAATGATATGTACGTTGAGTCCTGCACGGAGCCATGTTGAACAGTCACGGAATACTCTCTTCTTTGCTAGCTGTGCAAAGGAAGTTGCGACTAGTGCACATGTCAATATAGTTATGTCAGACAAGGCATTATTGAAGCACTTGCAAAAAGAAGTGGCCAGGCTTGAAAATGAATTACGAGCCCCTGGGCACTCCGCTCCTGGGAACTCCGCTCCCTCTCAGTACACTGAGGCTTTGTTGAAGGAGAAAGATCTCCAGATTCGGAAGATGGCCCAAGAGATCAAGAAGCTGACTCAAACAAAGAGATGCTGCACAAAGCCAATTTGAGGACCTGCTTCGGAGCATTGCTAGCAGTCAAGGGTCAACAAGATGGCACTCAATTAATCCCAGTCACACTCTTGCTCGGAAAATAAACTCTTATGAAGATGAATGTGCAGTGTCAGATGTATCCAGCACAGGGCATGATATGGATTCAGATGACTTGCAATTTCCTAAACTGCATAACTCTGACAACGGAACAGTGAGTCAGACAAGCAGTGAAATTTTTTATCAGCAAAGCATTCAAAAACATCAAGAAGAAGCTCTTTTACAGTCAGAAGAATTTCAACAATCCTCAGCCTCCACACCCGACAAGCATCCTGTTAGGGAGTCCACCTCAAATCCCCTACTGTTGGTTCAAGAAATTAGAAAGTTGGAGTATCTGCAGGAGGAGCTTGGTAAGGATGCTAGTAGAGCTTTGGCAGCCCTTCAGAAAGAAGTCCAGTGCCTTGATATCGCTCAAAAAGGTAAACCCAAGAATGATACAGCATCGTCTGTGACAGAGTTTAGAGGAGAAATTCGAACGTTGTGTTCAAAGGAAGAAAATTCAAGCCCAGAAGAAACTGCTTCGAGAAGCCTAGTAGATATAACGCTCAAGGAAGAGATTTCAAGACTGAATGGCTCAGGGGATCTCCACAAATTAACTGATACTGATGCAACAATTGCTGCATTGGAAGAGCAACTTCAGAATGTGCAACAGTCCATTGAAAATCTTGTACTTCCTCTTCCCAATGAGGTTAGATTATCGGATTTCAGTAGAGCTCCACAACTAACAAGGAGTAGAAGTTGTATAGCTGAAATAATGACTAGCCCTCCATCCTCTCCCTCTTCTTGGGTGACAGATAGTTTTGGGCATAACGAAAACACTCCACCAGAAACAGCTGGTTGGAAGAGACCTGGGAGCTTGAGGAAGAATCTTTTTCATAAAAATGAGGGTAAAGAAGGCAATGTGTTATCCACAGACAGCACTGAAATGCTTGAACGAAGTGCTTCTTTTGACATAAAAAATGTTAAGAATATGTTCAAGGTTGCTGCTGAAGAGAATATTAATAATATTCGCTCTTATGTCACCGAGCTCAAAGAGCGCGTGGCCAAGCTTCAATACCAGAAACAGCTTCTTGCTTGCCAGGTGATGGAACTGGAGACAAATGGAAATGTTCAGGATGACAGAAATGTCGATGATGTGACTCTCGATCAGTCATCCAAACTTGTACAATCACCTTCCTCCTGGCCTTTGGAATTTGAGAAACAGAGAATGCAAATAATTGAACTCTGGGACAACTGCTACGTCTCCTTAGTTCACAGAACTCATTTTTTCCTACTATTCAAAGGTGATCCTTCAGATGCAATATACATGGAGGTAGAACTAAAGAGGCTGTCATTCCTTCATAAACATTTCTCTCACAGGGCTGGTAATAGCCCTGCTCACAATGACGATCAGACCACTTCTCTGGCTTCTAGTATTCGAGCTTTGAGGCGTGAAAGAGAAATACTGGCTAGGCAGATGCAAAGGAAATTAACGGCGTCTGAGAGAGAGACCTTATTTGAGAAATGGGGTGTTGTCCTAGACACAAAGCAGAGGAAATTGCAGTTGGCTCAGAGATTATGGACAGATACCCAAGATATGGCCCACATCCAAGAGAGTGCTAATATTGTTGCTAAGCTTGTTGGATTTTTGGAACCGGGACGAGTATCAAAAGAGATGTTTGAGCTCAGCTTCACACCTGCGAAGAACAACCAGAGGTTATCATCCTCTGGGTGGAATCTTATCTCAACTCTCTTGAGCTTTTAAACTGTATCTTGGGTCTTGTACTTTAAACTAAGAGCACTGTGCATTTATTCCTCTCTCTTTATTCTATTGCTTGTTTTGATAAAGAGAATTGTTTTATTCCTGCCGTTGTAATAACACGCTTCCACAGAGAATTGTTTGAATATGTATATGTGCAGTTTAGCATATATGATTGATTAACTTCTGTCTTGGTACTGAGTCAAGGGTACCAATGACTTGTAAGC

Ace file of the UniGene sp_v3.0_unigene5018

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9R839_RICCO	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Sma3	Putative kinesin heavy chain	-	-	5.027e-16	-

Source	Gene names
Sma3	AT4g24170; AT4g38950; AT4g39050; At1g18370; At1g21730; At1g59540; At2g21300; At2g21380; At3g43210; At3g49650; At3g51150; At4g24170; At4g38950; At4g39050; At5g42490; AtNACK1; AtNACK2; CHLREDRAFT_98837; CHLREDRAFT_99147; F14P13.22; F19H22.150; F19H22.50; F2

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	male meiosis cytokinesis	GO:0007112	Biological Process	-
Sma3	radial microtubular system formation	GO:0010245	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Ribosome-associated, YjgA	IPR006839	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G24170.1	ATP binding microtubule motor family protein chr4:12543206-12546805 FORWARD LENGTH=1004	65%
RefSeq	Arabidopsis thaliana	NP_567695.1	ATP binding microtubule motor family protein [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002301999.1	predicted protein [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACB2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 203 aas, putative chimeric sequence, your sequence is shorter than subject: 313 - 509

Fln protein: MRGITDRAVMDIYNYIDKHSERVFVLKFSAMEIYNEVVKDLLASSENSGPLRILDDPERGTVVEKLVEERVQDKDHLQKLLSICEAHRQVGETSLNEASSRSHQIVRLTIESSVRETRPEDNTSSSLVASLNLVDLAGSERASQSLSAGVRLKEGCHINRSLLTLGTVIRKLSGNNKIRNGHIPYRDSKLTRILQHALGGNARTAMICTLSPARSHVEQSRNTLFFASCAKEVATSAHVNIVMSDKALLKHLQKEVARLENELRAPGHSAPGNSAPSQYTEALLKEKDLQIRKMAQEIKKLTQTKRCCTKPI*

Protein Length: 314

Fln nts: TGGTATTGTTTTCTAGTACTTGGGTAATGCATTAATGATAAAACACTGGTCTATAAATACACCATTCCGGAGCGATCTCTGTTTCCAACTGCATATTCATTTGATAGAGTATTCGGGAGTGAAGCCTCAACAGATGAGGTGTATGAGGATGGGGCAAAGGAGGTGGCTCTTTCCGCTCTCAGCGGTCTCAATGCAACAATATTTGCATATGGGCAGACCAGCAGTGGAAAGACGTATACG_-_ATGAGGGGCATCACAGATCGTGCTGTGATGGATATTTACAACTATATTGACAAGCACTCGGAACGAGTATTTGTCTTAAAGTTTTCTGCAATGGAAATTTATAACGAAGTGGTGAAGGATCTCCTCGCTTCTTCTGAAAACAGTGGCCCTCTTCGGATTCTGGACGATCCAGAGAGGGGGACAGTTGTGGAGAAATTGGTTGAAGAAAGGGTGCAGGATAAAGATCATCTGCAAAAGCTTTTGAGTATATGTGAAGCTCACAGACAGGTCGGAGAGACTTCTCTGAACGAAGCAAGTTCCAGATCTCATCAAATTGTTAGACTGACAATTGAAAGCTCTGTTCGAGAAACACGACCAGAAGACAACACGTCGAGCTCTTTAGTCGCGAGTTTGAACCTTGTTGATCTTGCAGGGAGTGAGCGCGCATCTCAATCTCTTTCAGCAGGAGTTAGATTGAAGGAAGGTTGCCATATTAATCGCAGCTTGCTTACCCTGGGCACTGTGATCAGGAAGCTCAGTGGAAACAATAAAATTAGGAATGGTCACATTCCATACCGAGATTCTAAACTCACCCGAATTCTTCAACATGCATTGGGAGGCAATGCAAGGACAGCAATGATATGTACGTTGAGTCCTGCACGGAGCCATGTTGAACAGTCACGGAATACTCTCTTCTTTGCTAGCTGTGCAAAGGAAGTTGCGACTAGTGCACATGTCAATATAGTTATGTCAGACAAGGCATTATTGAAGCACTTGCAAAAAGAAGTGGCCAGGCTTGAAAATGAATTACGAGCCCCTGGGCACTCCGCTCCTGGGAACTCCGCTCCCTCTCAGTACACTGAGGCTTTGTTGAAGGAGAAAGATCTCCAGATTCGGAAGATGGCCCAAGAGATCAAGAAGCTGACTCAAACAAAGAGATGCTGCACAAAGCCAATTTGA___GGACCTGCTTCGGAGCATTGCTAGCAGTCAAGGGTCAACAAGATGGCACTCAATTAATCCCAGTCACACTCTTGCTCGGAAAATAAACTCTTATGAAGATGAATGTGCAGTGTCAGATGTATCCAGCACAGGGCATGATATGGATTCAGATGACTTGCAATTTCCTAAACTGCATAACTCTGACAACGGAACAGTGAGTCAGACAAGCAGTGAAATTTTTTATCAGCAAAGCATTCAAAAACATCAAGAAGAAGCTCTTTTACAGTCAGAAGAATTTCAACAATCCTCAGCCTCCACACCCGACAAGCATCCTGTTAGGGAGTCCACCTCAAATCCCCTACTGTTGGTTCAAGAAATTAGAAAGTTGGAGTATCTGCAGGAGGAGCTTGGTAAGGATGCTAGTAGAGCTTTGGCAGCCCTTCAGAAAGAAGTCCAGTGCCTTGATATCGCTCAAAAAGGTAAACCCAAGAATGATACAGCATCGTCTGTGACAGAGTTTAGAGGAGAAATTCGAACGTTGTGTTCAAAGGAAGAAAATTCAAGCCCAGAAGAAACTGCTTCGAGAAGCCTAGTAGATATAACGCTCAAGGAAGAGATTTCAAGACTGAATGGCTCAGGGGATCTCCACAAATTAACTGATACTGATGCAACAATTGCTGCATTGGAAGAGCAACTTCAGAATGTGCAACAGTCCATTGAAAATCTTGTACTTCCTCTTCCCAATGAGGTTAGATTATCGGATTTCAGTAGAGCTCCACAACTAACAAGGAGTAGAAGTTGTATAGCTGAAATAATGACTAGCCCTCCATCCTCTCCCTCTTCTTGGGTGACAGATAGTTTTGGGCATAACGAAAACACTCCACCAGAAACAGCTGGTTGGAAGAGACCTGGGAGCTTGAGGAAGAATCTTTTTCATAAAAATGAGGGTAAAGAAGGCAATGTGTTATCCACAGACAGCACTGAAATGCTTGAACGAAGTGCTTCTTTTGACATAAAAAATGTTAAGAATATGTTCAAGGTTGCTGCTGAAGAGAATATTAATAATATTCGCTCTTATGTCACCGAGCTCAAAGAGCGCGTGGCCAAGCTTCAATACCAGAAACAGCTTCTTGCTTGCCAGGTGATGGAACTGGAGACAAATGGAAATGTTCAGGATGACAGAAATGTCGATGATGTGACTCTCGATCAGTCATCCAAACTTGTACAATCACCTTCCTCCTGGCCTTTGGAATTTGAGAAACAGAGAATGCAAATAATTGAACTCTGGGACAACTGCTACGTCTCCTTAGTTCACAGAACTCATTTTTTCCTACTATTCAAAGGTGATCCTTCAGATGCAATATACATGGAGGTAGAACTAAAGAGGCTGTCATTCCTTCATAAACATTTCTCTCACAGGGCTGGTAATAGCCCTGCTCACAATGACGATCAGACCACTTCTCTGGCTTCTAGTATTCGAGCTTTGAGGCGTGAAAGAGAAATACTGGCTAGGCAGATGCAAAGGAAATTAACGGCGTCTGAGAGAGAGACCTTATTTGAGAAATGGGGTGTTGTCCTAGACACAAAGCAGAGGAAATTGCAGTTGGCTCAGAGATTATGGACAGATACCCAAGATATGGCCCACATCCAAGAGAGTGCTAATATTGTTGCTAAGCTTGTTGGATTTTTGGAACCGGGACGAGTATCAAAAGAGATGTTTGAGCTCAGCTTCACACCTGCGAAGAACAACCAGAGGTTATCATCCTCTGGGTGGAATCTTATCTCAACTCTCTTGAGCTTTTAAACTGTATCTTGGGTCTTGTACTTTAAACTAAGAGCACTGTGCATTTATTCCTCTCTCTTTATTCTATTGCTTGTTTTGATAAAGAGAATTGTTTTATTCCTGCCGTTGTAATAACACGCTTCCACAGAGAATTGTTTGAATATGTATATGTGCAGTTTAGCATATATGATTGATTAACTTCTGTCTTGGTACTGAGTCAAGGGTACCAATGACTTGTAAGC

Fln Alignment:

Contig5018___MRGITDRAVMDIYNYIDK--HSERVFVLKFSAMEIYNEVVKDLLASSENSGPLRILDDPERGTVVEKLVEERVQDKDHLQKLLSICEAHRQVGETSLNEASSRSHQIVRLTIESSVRETRPEDNTSSSLVASLNLVDLAGSERASQSLSAGVRLK-EGCHINRSLLTLGTVIRKLSGNNKIRNGHIPYRDSKLTRILQHALGGNARTAMICTLSPARSHVEQSRNTLFFASCAKEVATSAHVNIVMSDKAL
D5ACB2______________MQPLPLRASEDILKLMNRPFYREQGFRLWLSFFEIYGGKLYDLLGDRRK---LCMREDARQQVCIVGLQEFEVSDIQCVKEYIEKGNGARSTGSTGANEESSRSHAILQLTIK---KHGEGKELKGGRTVGKLSFIDLAGSERGADTTDNDRQTRMEGAEINKSLLALKECIRALD-NDQI---HIPFRGSKLTEVLRDSFVGNSRTVMISCVSPNSGSCEHTLNTLRYADRVKGLSKSSNLKKDQSASSL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
2196	90		10		0.90298
2334	10		90		0.90298
2347	22		77		0.999999
2362	10			90	0.90298
2363		10	90		0.90298
2365		90		10	0.90298
2651		10	90		0.90298
2653			90	10	0.90298
2654			90	10	0.90298
2672	11		88		0.923564
2674		88		11	0.923564
3087		16	83		0.994512
3112	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain