SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene5005

Length: 950 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene5005

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peroxidase 7 [Arabidopsis thaliana] sp\|Q9SY33.1\|PER7_ARATH RecName: Full=Peroxidase 7; Short=Atperox P7; AltName: Full=ATP30; Flags: Precursor gb\|AAD32944.1\|AC004135_19 T17H7.19 [Arabidopsis thaliana] gb\|AAF98194.1\|AC000107_17 F17F8.26 [Arabidopsis thalia	-	-	52%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	46%
Sma3	Peroxidase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AP22.54; AoPOX1; At1g05240; At1g05250; At1g05260; At1g30870; At1g44970; At1g49570; At2g18150; At2g38380; At2g38390; At3g01190; At3g21770; At3g50990; At4g36430; At5g06720; At5g06730; At5g17820; At5g19890; At5g51890; At5g66390; B1386G10.20; C7A10.930; CEVI-

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to desiccation	GO:0009269	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	hyperosmotic salinity response	GO:0042538	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	RNA-binding protein Lupus La	IPR006630	-	-
Sma3	Ataxin-2, C-terminal	IPR009818	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G30870.1	Peroxidase superfamily protein chr1:10991535-10992885 FORWARD LENGTH=349	52%
RefSeq	Arabidopsis thaliana	NP_174372.1	peroxidase 7 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002316159.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5W5I2

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 19 aas, your sequence is shorter than subject: 273 - 351

Fln protein: VQQDFTLAASLIRLHFHDCVVRGCDASILLNYPGSERDSTVSHTLRGFNVVDDIKQQLENACPRTVSCADILTTIARDASLLLGGPFWSVPFGRKDGRISLARETYIVPQGHENLTALIELFQSRGLSILDLVILSGAHTIGRSVCSVIQDRLYNFNGTRKPDPTMDPTYVTYLQKKCTYGWNWGSNLVHLDPTTPNVLDVVYYQNLQNKKGLFVTDQLLYSDARTKFLIDTLASNPYLFYQQFSVSMVNLGNVQVLTGDEGEVRTNCNWNK*

Protein Length: 274

Fln nts: GTGCAGCAGGACTTCACACTTGCTGCCAGCCTCATACGTCTCCACTTCCACGACTGCGTCGTTCGAGGATGCGATGCGTCGATTCTGTTGAATTATCCAGGAAGCGAGAGAGATTCTACAGTAAGCCATACACTGCGCGGTTTTAATGTCGTGGATGACATCAAGCAACAGCTGGAGAATGCATGCCCTCGAACAGTTTCCTGCGCCGATATCCTCACAACAATTGCACGGGATGCATCGCTTCTGTTGGGAGGGCCATTCTGGAGCGTTCCCTTTGGTAGGAAAGACGGTCGCATCTCCCTAGCAAGGGAAACATATATCGTTCCGCAAGGCCATGAAAATTTGACTGCATTGATAGAATTGTTCCAGTCAAGGGGACTCAGTATTCTTGATTTAGTTATTCTTTCAGGTGCCCACACAATTGGGAGAAGCGTTTGCAGTGTGATACAGGACAGGCTTTACAACTTCAATGGCACCCGCAAGCCTGATCCAACCATGGATCCCACATATGTTACATACCTGCAAAAGAAGTGCACTTATGGATGGAATTGGGGGTCAAACTTAGTGCACTTAGACCCCACAACACCCAATGTTTTGGATGTTGTGTACTACCAAAATCTGCAGAATAAAAAAGGACTATTTGTGACAGATCAACTTCTTTACAGCGATGCTAGAACAAAATTTCTAATTGACACGCTTGCATCAAATCCATATTTATTCTACCAGCAATTCAGTGTGTCAATGGTGAACTTAGGAAACGTGCAAGTTCTCACTGGAGATGAAGGAGAAGTTCGCACTAACTGCAATTGGAACAAATAA___AGCTTCTATGGCACTATTCCATATTGAAATATTTAGTATCTATATCTCAAATAATGTATGTAATGGGTTATCAATATGCACGTCCTAGAGACTGGATTGTGTGTAAACCATTTTTTTTCAGCAGATAAGAA

Fln Alignment:

Contig5005___DFTLAASLIRLHFHDCVVRGCDASILLNYPGSERDSTVSHTLRG--FNVVDDIKQQLENACPRTVSCADILTTIARDASLLLGGPFWSVPFGRKDGRISLARETYI--VPQGHENLTALIELFQSRGLSILDLVILSGAHTIGRSVCSVIQDRLYNFN-GTRKPDPTMDPTYVTYLQKKCTYGWNWGSNLVHLDPTTPNVLDVVYYQNLQNKKGLFVTDQLLYSDARTKFLIDTLASNPYLFYQQFSVSMVNLGNVQVLTGDEGEVRTNC
Q5W5I2______________DITQAAGLLRLHFHDCFVQGCDGSVLLNSTSGEQTTPPNLSLRAQAFKIINDIKQHVEAACSGIVSCADILALAARDSVAMAGGPFYPIPFGRRDSLTFANLSTTLANLPSPTSNVTVLISVLGPKGLTFTDLVALSGGHTIGRSNCSSFQNRLYNSTTGISMQDSTLDQNFAKNLYLTCPT--NTSVNTTNLDILTPNVFDNKYYVDLLNEQTLFTSDQSLYTDTRTRDIVKSFALNQSLFFQQFVLSMLKMGQLDVLTGSEGEIRNNC

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
352		20		80	0.995493
383		40	60		1.0
460		50		50	1.0
680	80	20			0.995493
713	20			80	0.995493
817	54			45	1.0
833	36		63		1.0
857		27		72	1.0
862	36		63		1.0
882	55		44		1.0
894	55		44		1.0
896	44		55		1.0
942		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain