SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4984

Length: 192 nt

UniGene Fasta

>sp_v3.0_unigene4984
TAAGTTTTCTTAGTGCTGCCTCTGTATATTCAGAGAAGAGGAGATCATCTGCGGTGGAGTTACAAACGAAGAATATCGATGATGGGTAGATCTCCTTGCTGCTCAAACGAGGGACTCAACCGCGGGACCTGGACCGAAAAGGAGGACATGATTCTATCTGAATACGTTCAAATTCATGGCGATGGTCGATGG

Ace file of the UniGene sp_v3.0_unigene4984

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor DcMYB5 [Daucus carota]	-	-	5.0e-09	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	Gene names
Sma3	GSVIVT00016467001; RCOM_0712420; VITISV_031683; ghmyb10;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb-like domain	IPR017877	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G47460.1	MYB12, ATMYB12, PFG1 myb domain protein 12 chr2:19476438-19479242 FORWARD LENGTH=371	7.0e-11	56%
RefSeq	Arabidopsis thaliana	NP_182268.1	transcription factor MYB12 [Arabidopsis thaliana]	9.0e-11	56%
RefSeq	Populus trichocarpa	XP_002308528.1	predicted protein [Populus trichocarpa]	4.0e-14	67%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMJ6

Fln msg: Distance to subject end: 355 aas, your sequence is shorter than subject: 38 - 392

Fln protein: MMGRSPCCSNEGLNRGTWTEKEDMILSEYVQIHGDGRW

Protein Length: 39

Fln nts: TAAGTTTTCTTAGTGCTGCCTCTGTATATTCAGAGAAGAGGAGATCATCTGCGGTGGAGTTACAAACGAAGAATATCG_-_ATGATGGGTAGATCTCCTTGCTGCTCAAACGAGGGACTCAACCGCGGGACCTGGACCGAAAAGGAGGACATGATTCTATCTGAATACGTTCAAATTCATGGCGATGGTCGATGG

Fln Alignment:

Contig4984___MGRSPCCSNEGLNRGTWTEKEDMILSEYVQIHGDGRW
B8LMJ6______________MGRSPCCSKEGLNRGAWTKKEDMILSEYIRIHGDGGW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain