SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4925

Length: 1288 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4925

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI	-	-	0.0	90%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine).	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	GOs	Term	Type	e value	Identity
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16600.1	ROC3 rotamase CYP 3 chr2:7200862-7201383 FORWARD LENGTH=173	83%
RefSeq	Arabidopsis thaliana	NP_179251.1	Peptidyl-prolyl cis-trans isomerase CYP19-1 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002313736.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q5Y2E8

Fln msg:

Fln protein: MPNPKVFFDMQVGSAPAGRIVMELYADVVPKTAENFRALCTGEKGTGRSGKPLHKGSSFHRVIPGFMCQGGDFTRGNGTGGESIYGEKFADENFVRKHTGPGILSMANAGPNTNGSQFFICTAQTSWLDGKHVVFGQVVEGLEVVREIEKVGSGSGRTSKPVVIADSGQLA*

Protein Length: 173

Fln nts: TACATGTTCGAACTTGGAGAGAATTTGACGCCTCGATACAAAATACTCAGTAAAATGGGTGAAGGAACATTTGGTCAAGTGTTGGAATGTTGGGATCGAAAATCAAAGGATCGTTGCCATAAAAGTTGTCCGTGGATTACAGAAGTACCGAGAGGCAGCAATGATAGAAGTCGATGTACTTCGTAAAGTCGGCAAATATGACAGGAATGGCACCCGCTGTGTGCAGATGCGCGAATGGTTTGACTACCGGAATCACACTTGCATAATATGCATGAGTTGAAACTCGTTCACACGGATTTAAAGCCTGAAAATACACTTTGAGAGGCTTTGTAGCGGAGAAAGTAAGGTTGATCAATTTGGCAGAAAGTCAGGCTTTTGGTGCAGCTTTTTGCAGAATCTCAGAGGTTCCGAACTCAGG_-_ATGCCGAACCCAAAGGTTTTCTTTGATATGCAGGTCGGCAGTGCCCCAGCCGGCCGGATCGTGATGGAGCTCTATGCGGATGTGGTGCCGAAGACGGCTGAGAACTTCCGCGCGTTGTGTACCGGCGAGAAAGGCACCGGCCGCTCAGGCAAGCCTCTGCACAAGGGTTCGTCGTTCCACCGCGTGATCCCAGGGTTCATGTGCCAGGGCGGTGACTTCACAAGGGGCAACGGTACCGGTGGAGAGTCGATCTACGGCGAGAAGTTTGCCGATGAGAACTTTGTAAGGAAGCACACGGGGCCTGGCATCCTCTCCATGGCCAACGCCGGCCCTAACACTAACGGCTCGCAGTTCTTCATCTGTACCGCACAGACCTCGTGGCTGGATGGCAAGCATGTCGTATTTGGTCAAGTTGTAGAGGGTTTGGAGGTCGTGCGCGAGATCGAGAAGGTTGGATCTGGATCTGGCAGAACTTCAAAGCCGGTTGTCATTGCCGACTCTGGACAGCTCGCTTGA___ATTTTTATCACATACGTTAATAGGTTACTATTTCCTTCAACCATTACGCTGCATAGGTTCATAGCGTATTGTTCCCTTACCATTACGCTGCATAATTCGCTAGGGTTTGTCAGCATATATGTTTCAAGGGTTTTTTGCATCTTTCTACTCTAGATAATCGCTGCATAAGTTCCTAGGGTTTGTCAGCAAAGAGGCTTCAAATGTTTTTGTGTCTTTTCTAGTTATTATAAACGCTGCATGGGTTCCTAGGGTTTGTCAGCATAGAGATTTCAAGGGTTTTTTTACATCTTTGGAGTTGAGATAAACGCTATGCCAATAAACCCAGTAATGTTTGTTTCTGTCATATGAAATTTT

Fln Alignment:

Contig4925___MPNPKVFFDMQVGSAPAGRIVMELYADVVPKTAENFRALCTGEKGTGRSGKPLH-KGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGEKFADENFVRKHTGPGILSMANAGPNTNGSQFFICTAQTSWLDGKHVVFGQVVEGLEVVREIEKVGSGSGRTSKPVVIADSGQLA
Q5Y2E8______________MPNPKVFFDMQVGGAPAGRIVMELYADVVPKTAENFRALCTGEKGTGRSGKPLHFKGSSFHRVIPGFMCQGGDFTRGNGTGGESIYGEKFADENFVKKHTGPGILSMANAGPNTNGSQFFICTAQTSWLDGKHVVFGQVVEGLEVVREIEKVGSGSGRTSKPVVIADSGQLA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
847	97			2	0.999499
1169		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain