SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4913

Length: 1097 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4913

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp\|C0LGI2.1\|Y1677_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g67720; Flags: Precursor gb\|ACN59267.1\| leucine-rich repeat receptor-like	-	-	1.0e-26	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW70

Fln msg: W2: There is no M at the beginning, your sequence is longer than subject: 278 - 207

Fln protein: RNHSAVEKTFVPDQIQYDFNVSKAPNSNRPPILNAFEYHWLAYTDRPTNSHDIYALDALKRSFDIKDWISDPCYLVEWKGIGCDNSSSDIRISKLCLSGRNLTGLLPKDMALLTALVNLSLDSNHLMGSLPNFSNLTRLERLYLHNNNLNGTVPAWLSELKNLKELNIQNNNFSGVIPAQLLHNCSLKLNYSGNLYLHTEKRKCTLQKSKRNNLKVVLGTTLGGFLIIGLIVGVVYHNKFRRKDEGAVDESSRVEKERKHFLEQGQYQNYYYNMIQE*

Protein Length: 279

Fln nts: CACGCAATCATTCCGCAGTAGAGAAGACATTCGTCCCGGATCAAATTCAATATGATTTTAACGTTAGTAAGGCCCCTAACTCCAACCGTCCTCCTATACTCAACGCTTTCGAGTATCATTGGCTAGCTTACACAGATCGGCCAACAAATTCTCATGACATTTACGCTCTTGACGCTCTCAAAAGGAGTTTTGACATAAAGGATTGGATTTCCGATCCTTGTTATCTGGTCGAGTGGAAAGGAATTGGCTGCGATAACAGCTCTTCCGACATAAGAATTTCGAAACTCTGTTTGTCTGGAAGAAATCTTACAGGATTGCTACCTAAAGATATGGCACTGTTGACTGCGTTAGTTAATCTGTCACTTGACAGTAATCACTTGATGGGATCCTTACCAAATTTCTCCAATTTAACTAGGTTGGAGAGACTATATTTACATAACAACAACCTGAATGGTACTGTTCCAGCGTGGTTATCTGAACTGAAAAACCTTAAAGAGTTAAATATACAGAACAACAATTTCAGCGGTGTAATTCCTGCACAACTTCTGCACAATTGTTCGTTGAAACTCAATTATTCTGGAAACCTCTACCTACACACGGAGAAGAGGAAATGTACTTTACAGAAATCAAAGAGGAATAACTTGAAAGTTGTCCTGGGAACAACACTTGGTGGATTTCTAATCATAGGATTGATAGTGGGCGTTGTGTATCATAATAAATTCAGGAGAAAAGACGAAGGAGCTGTCGACGAAAGCAGTCGTGTGGAAAAGGAACGAAAACATTTCTTGGAGCAAGGTCAATATCAGAACTATTATTATAATATGATACAAGAATGA___AAATAATGGAAATTTTACTATTAGTAACTTTACCTTTCACGAGCTGATGGCAGACAGCCCGAGGATTAAGGTGCCCAATCCAACAAACTGCCGTGCCTTTACTCTAGCTCAGATGACAGTTGCCACAGAAACCTTTAGTCGGGAGATAGGACGAGGGGGATTTGGATCTGTGTTCTTTGGTAAATTGCCGGAAGGAAAAGAGATCACTGTAAAAGTGCTCTCATTATTCTCCCACCAGGGAGTTGACGAGTTTCTGAATGA

Fln Alignment:

Contig4913___LKRSFDIKDWISDPCYLVEWKGIGCDNSSSDIRISKLCLSGRNLTGLLPKDMALLTALVNLSLDSNHLMGSLPNFSNLTRLERLYLHNNNLNGTVPAWLSELKNLKELNIQNNNFSGVIPAQLLHNCSLKLNYSGNLYLHTEKRKCTLQKSKRN
A9NW70______________MKTRFNMKKWISDPCYLIPWEGIGCDNRSSEVRISEINLSGRNLTIPVPEEIGQLTALVNLSLENNHLMGPLPNFSSLTMLERLYLQNNSLNGSVPDWLSGLKNLKELFIQNNNFSGVIPAQLLLNRSLKLIRSGNPYLCVHKGDCILPNSNKN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
546		66		33	0.997452
549	25	75			0.996473
551		75		25	0.996473
552	75		25		0.996473
596	60		40		1.0
626	80		20		0.995493
661	75			25	0.996473
662		75	25		0.996473
663	75		25		0.996473
854	25			75	0.996473
855		25		75	0.996473
857		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain