SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4862

Length: 896 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4862

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ammonium transporter n=1 Tax=Populus trichocarpa RepID=B9HP47_POPTR	-	-	63%
FL-Next	tr=Putative ammonium transporter; Taxodium distichum (Bald cypress) (Cupressus disticha).	-	-	29%
Sma3	Ammonium transporter	-	-	-

Source	Gene names
Sma3	AMT1; AMT1.1; AMT1.2; AMT1.3; AMT1.4; AMT1A; AMT1B; AMT1D; AMT1Ea\|AMT1Eb; AMT1F; Amt1; Amt1-4; Amt1-5a; Amt1-5b; At1g64780; At3g24290; At3g24300; At4g13510; At4g28700; CHLREDRAFT_156131; CHLREDRAFT_157754; CHLREDRAFT_158745; CHLREDRAFT_206117; CHLREDRAFT_

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	ammonium transmembrane transporter activity	GO:0008519	Molecular Function	-
Sma3	high affinity secondary active ammonium transmembrane transporter activity	GO:0015398	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	cytoskeleton organization	GO:0007010	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	ammonium transport	GO:0015696	Biological Process	-
Sma3	methylammonium transport	GO:0015843	Biological Process	-
Sma3	protein polymerization	GO:0051258	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ammonium transporter	IPR001905	-	-
Sma3	Villin headpiece	IPR003128	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Gelsolin	IPR007122	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Phosphoesterase	IPR007312	-	-
Sma3		IPR010256	-	-
Sma3	Ammonium transporter, conserved site	IPR018047	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G64780.1	" ATAMT1;2, AMT1;2 ammonium transporter 1;2 chr1:24061021-24062565 REVERSE LENGTH=514"	68%
RefSeq	Arabidopsis thaliana	NP_176658.1	"ammonium transporter 1;2 [Arabidopsis thaliana]"	68%
RefSeq	Populus trichocarpa	XP_002314106.1	ammonium transporter [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q0EEH0

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 21 aas, your sequence is shorter than subject: 256 - 487

Fln protein: VVTLAVTQLVVLGTFLLWFGWYGFNAGSFIQILTTSTSGLLEGNWSGVGRTAVTTTLAGSMAALTTLFGKRLLSGHWNALDVCNGLLGGFVAITSGCSVVDPWAAIVCGFVAAWVLIGFNALALRLKFDDPLEAAQLHGGCGVWGVIFTGLFAAENHMVEVYPPANGDTTRPFGLLMGGGWRLLGAQVVEVLAIVGWVTVTMGPLFYAMQRMDLLRIGREEETAGMDISSHGGFAYDHSLPDEGPSRRYIDYLQK*

Protein Length: 257

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTCGTGGTGTTGGGGACGTTTTTGCTGTGGTTCGGTTGGTATGGATTCAACGCCGGTTCTTTCATCCAAATTTTGACCACGTCTACCAGCGGACTGCTGGAAGGGAACTGGTCGGGAGTGGGGCGTACCGCGGTCACGACCACGTTAGCGGGCTCCATGGCGGCTCTGACCACGCTTTTCGGAAAAAGGCTCCTCTCCGGGCACTGGAACGCCCTCGATGTTTGCAACGGGTTGCTCGGCGGATTCGTGGCCATCACTTCCGGGTGCTCCGTTGTCGACCCCTGGGCCGCCATCGTCTGCGGGTTCGTGGCGGCGTGGGTTCTGATCGGATTCAATGCCCTCGCGCTTAGGTTGAAATTCGATGACCCTCTAGAGGCGGCGCAACTTCACGGCGGCTGCGGGGTATGGGGGGTGATCTTCACCGGGCTGTTCGCTGCCGAGAATCATATGGTGGAAGTCTATCCGCCGGCAAATGGAGACACGACACGGCCGTTTGGGCTTCTAATGGGAGGCGGGTGGAGGCTTCTGGGAGCTCAGGTTGTCGAAGTTCTGGCGATTGTTGGATGGGTGACGGTCACCATGGGGCCACTGTTTTATGCTATGCAAAGGATGGATCTTCTCAGAATTGGCAGAGAGGAAGAGACGGCCGGAATGGATATCTCTAGCCACGGCGGGTTTGCTTATGACCATTCACTTCCCGACGAGGGACCGTCTCGTCGGTATATCGATTATTTGCAAAAATAA___ATTGTCGACCATTGATTCCTTCAAAATATCTTGAAATAAGTATAAATTGATTCAAAGGTCTCCCAACTGGTGTAGGCCTACCGCACTGTGATATGGTACAGATTTCTTTATAACATTTTATTTCGTT

Fln Alignment:

Contig4862___LWFGWYGFNAGSFIQILTTSTSGLLEGNWSGVGRTAVTTTLAGSMAALTTLFGKRLLSGHWNALDVCNGLLGGFVAITSGCSVVDPWAAIVCGFVAA----W-VLIGFNALALRLKFDDPLEAAQLHGGCGVWGVIFTGLFAAENHMVEVYPPANGDTTRPFXXXXXXXXXXXXAQVVEVLAIVGWVTVTMGPLFYAMQRMDLLRIGREEETAGMDISSHGGFAY
Q0EEH0______________LWLGWCGFNGGGPYSANVVSSMAVLNTNICAATSLLVWT-------CLDVIFFKKP-----SVIGAVQGMITGLVCITPGAGVVQGWAAIVMGVLSGSIPWWTMMIVHKKSALLQKVDDTLAVFHTHAVAGLLGGALTGLLA-EPTLCGLFLAIKNSKGAFYGDGMQFVK-----QIVGATFIIGWNIVVTSIIMLAIQFFIPLRMPDEELLIG-DDAVHGEEAY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
517	42		57		1.0
631	68			31	1.0
688		33		66	1.0
748		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain