SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4717

Length: 502 nt

UniGene Fasta

>sp_v3.0_unigene4717
CGTCGTGACCTTGGCTGTCACTCAATCATCGCATCTGCCAGTAATCTGTCCGCTGTAAAGGATTACTCGAAGCCTCTGCCCTTAAATAAACCTGGCCGTCACTCCAAGTCACTGCAAGTGTTCCGGCAATTTCTCGCAGGCTAACCTCACATACACTGTTCAGCACAACGATATCTACATCAATATCGCGAACCAGACATTAGAAGGCCTCACGACCTGCCAGGCCATGCGAGAGCAGAATCCAAGGTACGGCGTTAACGATTTAACGCCTGGAATTAAACTCGTTGCGCCCCTTCGCTGCGCGTGCCCGACTGCTAAACAGGTCGCCAAAGGCGTCAAGCTTTTGCTCTCCTACATCGCAGATCCGGACGACGATGACGATATAATCACGGAAAAGTTCAATATAGTTCATGCAGATTTCATCTCTGCAAATAATCTGGAGCCCATAAACCCCACTATTTATCCCTACACAACTCTGCTAATTCCCCTCGACCACAACCCT

Ace file of the UniGene sp_v3.0_unigene4717

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	lysin motif receptor-like kinase [Arabidopsis thaliana] gb\|AAC17086.1\| putative protein kinase [Arabidopsis thaliana] gb\|AEC07489.1\| lysin motif receptor-like kinase [Arabidopsis thaliana]	-	-	4.0e-28	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%

Source	Gene names
Sma3	At2g23770; GSVIVT00025016001; POPTRDRAFT_796841; RCOM_0411660;

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR017442	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G23770.1	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein chr2:10120242-10122080 REVERSE LENGTH=612	6.0e-34	45%
RefSeq	Arabidopsis thaliana	NP_179957.1	lysin motif receptor-like kinase [Arabidopsis thaliana]	7.0e-34	45%
RefSeq	Populus trichocarpa	XP_002327712.1	predicted protein [Populus trichocarpa]	2.0e-32	47%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ73

Fln msg: Distance to subject end: 412 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 139 - 536

Fln protein: INLAVTPSHCKCSGNFSQANLTYTVQHNDIYINIANQTLEGLTTCQAMREQNPRYGVNDLTPGIKLVAPLRCACPTAKQVAKGVKLLLSYIADPDDDDDIITEKFNIVHADFISANNLEPINPTIYPYTTLLIPLDHNP

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATCGCATCTGCCAGTAATCTGTCCGCTGTAAAGGATTACTCGAAGCCTCTGCCCTTAAATAAACCTGGCCGTCACTCCAAGTCACTGCAAGTGTTCCGGCAATTTCTCGCAGGCTAACCTCACATACACTGTTCAGCACAACGATATCTACATCAATATCGCGAACCAGACATTAGAAGGCCTCACGACCTGCCAGGCCATGCGAGAGCAGAATCCAAGGTACGGCGTTAACGATTTAACGCCTGGAATTAAACTCGTTGCGCCCCTTCGCTGCGCGTGCCCGACTGCTAAACAGGTCGCCAAAGGCGTCAAGCTTTTGCTCTCCTACATCGCAGATCCGGACGACGATGACGATATAATCACGGAAAAGTTCAATATAGTTCATGCAGATTTCATCTCTGCAAATAATCTGGAGCCCATAAACCCCACTATTTATCCCTACACAACTCTGCTAATTCCCCTCGACCACAACCCT

Fln Alignment:

Contig4717___NFSQANLTYTVQHNDIYINIANQTLEGLTTCQAMREQNPRYGVNDLTPGIKLVAPLRCACPTAKQVAKGVKLLLSYIAXXXXXXXIITEKFNIVHADFISANNLEPINPTIYPYTTLLIPLDHNP
B8LQ73______________NYSQANVTYTIYGGDTFYLISTRKFENLTTYPAVEVTNPTLVVTNLQIGSLATIPIRCKCPSNAQVTNGTKMLITYVVHPGDTLLNISQKFG---ADLQNLKSLNGINSTLIPYSTLLVPVSQKP

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
84	25			75	0.996473
85	25	75			0.996473
86	25		75		0.996473
88	25		75		0.996473
90	25	75			0.996473
91		75	25		0.996473
92		25		75	0.996473
95			75	25	0.996473
97		25		75	0.996473
102		75		25	0.996473
108			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain