SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4698

Length: 533 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene4698
CTCCGCCAGGACCAGCTCACAGTCCTCGTAAACGGCTTCTCTGAGAGCCGCCTCTCTCTGCTCCGCAGGATCGCTCAAAGCTACTCCTCGTTTCCCTGCGTGCACTCCGTGTTCATTCTCTGGGGCAACGGTTCCACGACCTCGGAACTCCTCGAAAGCCAAGATTTAAGCTCCCTGGGAGCTCCGATCTACATTGTGAAGCAGCCCTCCCGCAGCCTCAATGACCGCTTTCTCCCTCGAGGGGCCGTCATCGCGACTCGATCCGTTCTCGTCTGTGACGATGACGTGGAGATCGATGCCGAATCCATCTGCTTCGCCCTCCGCGTCTGGGAGCAACACGGCGGTCGGCGGCTCGTCGGCTTCTTCGCGCGTTCACATGGGTTCGAACTGGAGACTGGCTCCTGGATCTACACGGTCCACCCGGACAAATACTCCATTGTGCTCACCAAGCTCATGATCGTTGCCACGGAGTATTTGTTCCTTTTACACGTGCGAGGCCCCGCCAGGGGTCAGGGAATTCGTGGAGGAGAACA

Ace file of the UniGene sp_v3.0_unigene4698 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleotide-diphospho-sugar transferase [Arabidopsis thaliana] gb\|AEE36384.1\| nucleotide-diphospho-sugar transferase [Arabidopsis thaliana]	-	-	1.0e-37	49%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	53%

Source	Gene names
Sma3	AT1G80290; At1g80290; F5I6.4; OsI_29918; OsJ_27967; PHYPADRAFT_146391; POPTRDRAFT_1116750; RCOM_0476310; VITISV_033101;

Source	GOs	Term	Type	e value	Identity
Sma3	intrinsic to endoplasmic reticulum membrane	GO:0031227	Cellular Component	0.0	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	EXTL2, alpha-1,4-N-acetylhexosaminyltransferase	IPR015338	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G80290.2	Nucleotide-diphospho-sugar transferases superfamily protein chr1:30188420-30189574 FORWARD LENGTH=337	51%
RefSeq	Arabidopsis thaliana	NP_565236.1	nucleotide-diphospho-sugar transferase [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002330776.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TJ72

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 177 - 307

Fln protein: LRQDQLTVLVNGFSESRLSLLRRIAQSYSSFPCVHSVFILWGNGSTTSELLESQDLSSLGAPIYIVKQPSRSLNDRFLPRGAVIATRSVLVCDDDVEIDAESICFALRVWEQHGGRRLVGFFARSHGFELETGSWIYTVHPDKYSIVLTKLMIVATEYLFLLHVRGPARGQGIRGGE

Protein Length: 178

Fln nts: CTCCGCCAGGACCAGCTCACAGTCCTCGTAAACGGCTTCTCTGAGAGCCGCCTCTCTCTGCTCCGCAGGATCGCTCAAAGCTACTCCTCGTTTCCCTGCGTGCACTCCGTGTTCATTCTCTGGGGCAACGGTTCCACGACCTCGGAACTCCTCGAAAGCCAAGATTTAAGCTCCCTGGGAGCTCCGATCTACATTGTGAAGCAGCCCTCCCGCAGCCTCAATGACCGCTTTCTCCCTCGAGGGGCCGTCATCGCGACTCGATCCGTTCTCGTCTGTGACGATGACGTGGAGATCGATGCCGAATCCATCTGCTTCGCCCTCCGCGTCTGGGAGCAACACGGCGGTCGGCGGCTCGTCGGCTTCTTCGCGCGTTCACATGGGTTCGAACTGGAGACTGGCTCCTGGATCTACACGGTCCACCCGGACAAATACTCCATTGTGCTCACCAAGCTCATGATCGTTGCCACGGAGTATTTGTTCCTTTTACACGTGCGAGGCCCCGCCAGGGGTCAGGGAATTCGTGGAGGAGAACA

Fln Alignment:

Contig4698___LRQDQLTVLVNGFSESRLSLLRRIAQSYSSFPCVHSVFILWGNGXXXXXXXXXXXXXXLGAPIYIVKQPSRSLNDRFLPRGAVIATRSVLVCDDDVEIDAESICFALRVWEQHGGRRLVGFFARSHGFELETGSWIYTVHPDKYSIVLTKLMIVATEYLFLLHVRGPA
A9TJ72______________LRTDQLTILVNGFGEARLPLLEASVRKYSSSPVVHSVFVLWGNTSTPDSFLQASKFQSIGAPIYIVRQNSMSLNDRFLPR-PFVKTKAVMICDDDITVDSKNLEFALQVWREN-QQRIVGFFPRAHSYQLDSHSWVYTKNQHHYSIVLTKIMILATDYLYRYSCEMPA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
141	50		50		1.0
229	85			14	0.993533
262	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain