SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4408

Length: 1948 nt

UniGene Fasta

>sp_v3.0_unigene4408
ATGGGGATGCGAGATTAGTTGGGCCTCACAAACTTTATCTTTGTTCTCTTTCCTCTTCGTTCTCAGATCTACAAACCCTAGAAACTGTCGGGAGGGAGCCTGTATTTTCTGCGACTGAAATCTTCCGGACCCCGTGCAATAGCCATGGCTTGCGTTGCAAAATATCATCGCCCTCTTAATGTGCTCGATGAAAGTCCCAGGAAGCGCAGGAAACTAACTTCATCGTGGGATGTTCTTCCCTCTGAGCTCCAGAGTCAGCCAACTATTATATCTGCCGACCCAGAAAATGGAGATGGAAAAGTAAGCGTCCCTATCTCATCAGGGGCAGAACACTCCATTCCTTCTGACCATAGTCGGTCTGCTTCTTCAGCTTTGAAGCCCAAAGCAGGGATCTCCCGTAATGGATCTCCGCCATGGCGTAACGATGACAAGGATGGCCATTATGTGTTTGAACTTGGAGAGAATTTGACGCCACGCTATAAAATACTCAGTAAAATGGGCGAAGGGGCATTTGGCCAGGTCTTGGAATGCTGGGACCGAAAATCGAAGGATTTTGTAGCTATCAAAATTGTTCGTGGTGTACAAAAATACCGAGAGGCAGCAATGATCGAAATTGAAGCGCTTCTTGAAGTTTCTAAGTATGACAAAAATAGCACACGCTGCGTGCAGATGCGCGAATGGTTTGACTATCGGAACCACACTTGCATTGTCAGTATTCTGTGGCAATTTATATTTTCATCCTTTCTGGTTTACAAACACTTTAGAGCTCTGCATATGTATACGGTTGTTAGTGTGTGTGTTTAAGGTTGTGGATGGATGTAAAAGCAGGTTTTTGAGAAGCTTGGGCCAAGCTTATATGATTTTCTACGGAAAAACGATTACCGTCCATTTCCAATTGATCTTGTCCGGGAGGTTGGAAGACAACTGTTGGAATCTGTAGCATATATGCACGAGTTGAAACTCGTTCACACGGACTTAAAGCCTGAAAATATACTTTTCGTTTCTTCAGACTATGTGAAGGTTCCTTGTTTCGAGGGATCATCTCCACGTGACATGAAAAGGTTACCAAAGTCCAGTCTAATAAAGTTAATTGATTTTGGAAGCACCACATTTGAAAATCAAGATCACACCTCAGTGGTCTCTACAAGGCACTATCGAGCACCTGAAGTTATTTTGGGTCTCGGATGGAACTACCCTAGTGATATTTGGAGTGTAGGATGCATACTTGTGGAGCTGTGCTCGGGGGAGACATTGTTTCAAACCCATGAAAACTTGGAACATCTTGCTATGATGGAAAGGGTTATGGGGCCTTTGCCTCATCGTATGATAAAGAGAGCAGATGGAAGATGTGCGAAATATTTTACTAGAAGTCGAACACAATTGTTATGGCCCGAACAAACTTCGTCTCGAGAGAGCATCAGAGCAGTGAGGAAGTTACCAAAACTTAGGGATTTGATAATGCAGAACGCAGACCATTCTGCAGGTCTCCTTATAGACTTGTTGCAAGGCCTTCTTAAGTTTGAACCTTCAGAACGCTTGAAAGCTTCAGAGGCTTTGAGACATCCATTCTTCAGAGAAGGTTCGAGAAGATATGATTATAGTGCATATACTTCATAAAGTATGGATCTGACTATCTGTTAGTCTCAGATTTGTATTTGAGGTCCAGAGTCGCTGTGAATCATTGTACAATGCACATTGAGGAATTTCCTTCTCAACTCCGGACAGTTGTCTAGCTGTAATGTGTTATATTATGGATTCTTGGTGAAGGGTTTGGTATACCATTCAGCAGTGGTGTTTAGGCGAAATGAGTCCTTACATCATCAGCAGGCTTTTTGTACATTAGAGAGTTCGTTGAAAATTGCCGATATATTGCATATAATGAAATATGCATCTGAGAATTGTTCAGATATCGGTTGTCTATCGGTGAATCGTAGATTGTATTTACATT

Ace file of the UniGene sp_v3.0_unigene4408

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH	-	-	0.0	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Afc, putative	-	-	9.009e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dual-specificity kinase.	EC:2.7.12.1	-	2.923e-23	-

Source	Gene names
Sma3	AFC1; AFC2; AFC3; AME2; AME3; AT3G53570; At3g53570; At4g24740; At4g32660; CHLREDRAFT_130101; F22K18.60; F4D11.140; F4P12_270; GSVIVT00015960001; GSVIVT00023119001; GSVIVT00030742001; GSVIVT00032520001; LOC_Os12g27520; MICPUCDRAFT_3523; MICPUN_57150; OSTLU

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	mRNA processing	GO:0006397	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G24740.1	AFC2, AME1, FC2 FUS3-complementing gene 2 chr4:12754729-12757653 REVERSE LENGTH=427	59%
RefSeq	Arabidopsis thaliana	NP_194205.1	serine/threonine-protein kinase AFC2 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002322829.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LL66

Fln msg: your sequence is longer than subject: 491 - 459

Fln protein: MACVAKYHRPLNVLDESPRKRRKLTSSWDVLPSELQSQPTIISADPENGDGKVSVPISSGAEHSIPSDHSRSASSALKPKAGISRNGSPPWRNDDKDGHYVFELGENLTPRYKILSKMGEGAFGQVLECWDRKSKDFVAIKIVRGVQKYREAAMIEIEALLEVSKYDKNSTRCVQMREWFDYRNHTCIVSILWQFIFSSFLVYKHFRALHMYTVVSVCV*GCGWM*KQVFEKLGPSLYDFLRKNDYRPFPIDLVREVGRQLLESVAYMHELKLVHTDLKPENILFVSSDYVKVPCFEGSSPRDMKRLPKSSLIKLIDFGSTTFENQDHTSVVSTRHYRAPEVILGLGWNYPSDIWSVGCILVELCSGETLFQTHENLEHLAMMERVMGPLPHRMIKRADGRCAKYFTRSRTQLLWPEQTSSRESIRAVRKLPKLRDLIMQNADHSAGLLIDLLQGLLKFEPSERLKASEALRHPFFREGSRRYDYSAYTS*

Protein Length: 492

Fln nts: ATGGGGATGCGAGATTAGTTGGGCCTCACAAACTTTATCTTTGTTCTCTTTCCTCTTCGTTCTCAGATCTACAAACCCTAGAAACTGTCGGGAGGGAGCCTGTATTTTCTGCGACTGAAATCTTCCGGACCCCGTGCAATAGCC_-_ATGGCTTGCGTTGCAAAATATCATCGCCCTCTTAATGTGCTCGATGAAAGTCCCAGGAAGCGCAGGAAACTAACTTCATCGTGGGATGTTCTTCCCTCTGAGCTCCAGAGTCAGCCAACTATTATATCTGCCGACCCAGAAAATGGAGATGGAAAAGTAAGCGTCCCTATCTCATCAGGGGCAGAACACTCCATTCCTTCTGACCATAGTCGGTCTGCTTCTTCAGCTTTGAAGCCCAAAGCAGGGATCTCCCGTAATGGATCTCCGCCATGGCGTAACGATGACAAGGATGGCCATTATGTGTTTGAACTTGGAGAGAATTTGACGCCACGCTATAAAATACTCAGTAAAATGGGCGAAGGGGCATTTGGCCAGGTCTTGGAATGCTGGGACCGAAAATCGAAGGATTTTGTAGCTATCAAAATTGTTCGTGGTGTACAAAAATACCGAGAGGCAGCAATGATCGAAATTGAAGCGCTTCTTGAAGTTTCTAAGTATGACAAAAATAGCACACGCTGCGTGCAGATGCGCGAATGGTTTGACTATCGGAACCACACTTGCATTGTCAGTATTCTGTGGCAATTTATATTTTCATCCTTTCTGGTTTACAAACACTTTAGAGCTCTGCATATGTATACGGTTGTTAGTGTGTGTGTTTAAGGTTGTGGATGGATGTAAAAGCAGGTTTTTGAGAAGCTTGGGCCAAGCTTATATGATTTTCTACGGAAAAACGATTACCGTCCATTTCCAATTGATCTTGTCCGGGAGGTTGGAAGACAACTGTTGGAATCTGTAGCATATATGCACGAGTTGAAACTCGTTCACACGGACTTAAAGCCTGAAAATATACTTTTCGTTTCTTCAGACTATGTGAAGGTTCCTTGTTTCGAGGGATCATCTCCACGTGACATGAAAAGGTTACCAAAGTCCAGTCTAATAAAGTTAATTGATTTTGGAAGCACCACATTTGAAAATCAAGATCACACCTCAGTGGTCTCTACAAGGCACTATCGAGCACCTGAAGTTATTTTGGGTCTCGGATGGAACTACCCTAGTGATATTTGGAGTGTAGGATGCATACTTGTGGAGCTGTGCTCGGGGGAGACATTGTTTCAAACCCATGAAAACTTGGAACATCTTGCTATGATGGAAAGGGTTATGGGGCCTTTGCCTCATCGTATGATAAAGAGAGCAGATGGAAGATGTGCGAAATATTTTACTAGAAGTCGAACACAATTGTTATGGCCCGAACAAACTTCGTCTCGAGAGAGCATCAGAGCAGTGAGGAAGTTACCAAAACTTAGGGATTTGATAATGCAGAACGCAGACCATTCTGCAGGTCTCCTTATAGACTTGTTGCAAGGCCTTCTTAAGTTTGAACCTTCAGAACGCTTGAAAGCTTCAGAGGCTTTGAGACATCCATTCTTCAGAGAAGGTTCGAGAAGATATGATTATAGTGCATATACTTCATAA___AGTATGGATCTGACTATCTGTTAGTCTCAGATTTGTATTTGAGGTCCAGAGTCGCTGTGAATCATTGTACAATGCACATTGAGGAATTTCCTTCTCAACTCCGGACAGTTGTCTAGCTGTAATGTGTTATATTATGGATTCTTGGTGAAGGGTTTGGTATACCATTCAGCAGTGGTGTTTAGGCGAAATGAGTCCTTACATCATCAGCAGGCTTTTTGTACATTAGAGAGTTCGTTGAAAATTGCCGATATATTGCATATAATGAAATATGCATCTGAGAATTGTTCAGATATCGGTTGTCTATCGGTGAATCGTAGATTGTATTTACATT

Fln Alignment:

Contig4408___MACVAKYHRPLNVLDESPRKRRKLTSSWDVLPSELQSQPTIISADPE----NGDGKVS-----VPISSGAEHSIPSDHSRSASSALKPKAGISRNGSPPWRNDDKDGHYVFELGENLTPRYKILSKMGEGAFGQVLECWDRKSKDFVAIKIVRGVQKYRXXXXXXXXXXXXVSKYDKNSTRCVQMREWFDYRNHTCIVSILWQFIFSSFLVYKHFRALHMYTVVSVCV*GCGWM*KQVFEKLGPSLYDFLRKNDYRPFPIDLVREVGRQLLESVAYMHELKLVHTDLKPENILFVSSDYVKVPCFEGSSPRDMK------RLPKSSLIKLIDFGSTTFENQDHTSVVSTRHYRAPEVILGLGWNYPSDIWSVGCILVELCSGETLFQTHENLEHLAMMERVMGPLPHRMIKRADGRCAKYFTRSRTQLLWPEQTSSRESIRAVRKLPKLRDLIMQNADHSAGXXXXXXXXXXKFEPSERLKASEALRHPFFREGSRRY
B8LL66______________MACVAEY--PSYFIEGHPRKRRKLTASWDTRHYQDQAQQSVYFSGQGVGNGNGNGNGSGNGNGIPSSAGASSS---SYHYCSSSSLYSKRVTARNASPPWRDDDKDGHYMFALGDNLTPRYKILNKIGEGTFGQVLECWDRETREFVAVKIVRGLQRYREAAMIEIDVLREVAKYDRSGTRCVQMRNWFDYRNHVCIV----------------------------------------FEKLGPSLYDFLRKNNYHPFPIDIVRELGKQLLESVAYMHHLHLIHTDLKPENILFASSEYKKVPYYKNGLKRLSQDGTCYMRLPKSTAIKLIDFGSATFEDQNHSSIISTRHYRAPEVILGLGWSYPADVWSIGCILVELCVGETLFQTHENMEHLAMMERVLGPFPQHLIRKADARSAKYF-RHGTRLNFPEGASSRESIRAVKKLPRLRNLVMERADHSAGALIDLLQGLLKYEPSERLEAQEALRHPFFTEDYRGF

SNPs (tot: 3)

Position	A %	C %	T %	Probability
35		33	66	0.997452
47	33		66	0.997452
395		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain