SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4390

Length: 1474 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4390

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	perakine reductase [Rauvolfia serpentina]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60710.1	ATB2 NAD(P)-linked oxidoreductase superfamily protein chr1:22355073-22356627 REVERSE LENGTH=345	64%
RefSeq	Arabidopsis thaliana	NP_564761.1	NAD(P)-linked oxidoreductase-like protein [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002319637.1	predicted protein [Populus trichocarpa]	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNQ6

Fln msg:

Fln protein: MANPVIPRVKLGNQGLEVSKVGYGCMGLTGTYNNPVSEEDGISIIKYAFEKGITFFDTADLYGATKNEVLVGKALKQLPRENVQLATKFGIVMVDGKMDAKGTPEYVRKCCEASLKRLDVDYIDLYYQHRVDTTVPIEETIGELKKLVEEGKIKYIGLSEASVDTIRRAHAVHPITAVQLEWSLWTRDIEESIVPVCRELGIGIVPYSPLGRGFFSGKAVVESLPENSLLVSHPRFKGENLEKNKIFYTHIANLAKKHGCTPGQLALAWLLHQGDDVVPIPGTTKAKNLDENIGSLNVELSQQDLEEIAGSLPIDEVAGLRTPEYMHHKSWLFADTPQK*

Protein Length: 341

Fln nts: ATGGGGACACCTTTTTGGGCATGTGACACTGTCGCACCAAACCACCAATCGGGTTTGGTGGCTGCCACCGACTGGTGGTACCCAACTAAGAACAGTCAAATTGGTTGCTTACTTAAAGAAGCTGGCAGTGAAGTGAGTAGCTTCATCTTTGAGTAGAATATCTTTATCGGTTTCTGATTTCTTTCGCACGTTAAAACGTCCATCATCTCCACCTCCATCGGCCTGCGCA_-_ATGGCAAATCCAGTGATCCCGCGAGTCAAGTTGGGTAACCAGGGATTAGAGGTGTCTAAAGTGGGATATGGATGCATGGGACTTACTGGAACATACAACAATCCTGTCTCTGAGGAAGATGGCATCTCAATCATCAAGTACGCTTTTGAAAAAGGAATCACCTTCTTTGACACTGCCGATCTGTATGGCGCTACCAAAAACGAAGTCCTGGTTGGCAAGGCCCTAAAGCAACTCCCTCGCGAAAACGTTCAGCTTGCAACGAAGTTTGGGATTGTAATGGTAGATGGAAAGATGGATGCCAAGGGTACTCCAGAGTATGTTCGGAAATGCTGTGAAGCAAGCCTTAAACGCCTTGATGTAGATTATATTGATCTTTATTACCAGCATAGAGTGGACACAACAGTCCCCATAGAAGAAACAATTGGGGAGCTTAAAAAGCTTGTGGAAGAGGGCAAAATAAAATATATTGGGCTCTCAGAGGCTAGTGTTGACACTATTAGAAGGGCCCATGCAGTGCATCCTATTACTGCTGTTCAGCTTGAATGGTCTCTCTGGACTCGTGACATAGAGGAAAGCATAGTCCCTGTGTGCAGGGAACTGGGCATTGGAATTGTACCATACAGTCCTCTCGGTAGGGGATTCTTCTCTGGTAAAGCAGTTGTGGAGAGCTTACCAGAAAATAGTTTACTGGTTTCTCATCCAAGATTTAAGGGGGAAAATCTGGAGAAGAACAAAATTTTCTACACACATATCGCGAATTTAGCTAAAAAGCATGGGTGCACACCTGGTCAACTAGCTCTTGCATGGCTTTTGCATCAGGGTGATGATGTTGTTCCCATCCCTGGAACGACAAAAGCAAAGAACCTGGATGAGAATATTGGCTCGTTGAATGTCGAACTTTCCCAGCAGGACTTGGAAGAAATTGCTGGTTCTCTACCCATTGATGAAGTTGCAGGGCTCCGAACTCCTGAATACATGCATCACAAATCATGGCTATTTGCAGACACCCCACAAAAATGA___TATTCTGGATAATTGCTTTATCAAAGTGTCCACCTATAAATTATTGATAGGATTTTATTGGCTGGAAACTCAAATCTATAGAGATTTGGCCTTGGTTATAAACTTAGATCTATAGATCTCAGCGTGCAATTGCTAAGTTTGCAAATTCACTTATTTTTCCTTTCTGCATTAGTTCTTACTTAATTAAAAACTAAATTTATCTGAATTAATGTTTTTACCGCATTT

Fln Alignment:

Contig4390___MANPVIPRVKLGNQGLEVSKVGYGCMGLTGTYNNPVSEEDGISIIKYAFEKGITFFDTADLYGATKNEVLVGKALKQLPRENVQLATKFGIVMVDGKMDAKGTPEYVRKCCEASLKRLDVDYIDLYYQHRVDTTVPIEETIGELKKLVEEGKIKYIGLSEASVDTIRRAHAVHPITAVQLEWSLWTRDIEESIVPVCRELGIGIVPYSPLGRGFFSGKAVVESLPENSLLVSHPRFKGENLEKNKIFYTHIANLAKKHGCTPGQLALAWLLHQGDDVVPIPGTTKAKNLDENIGSLNVELSQQDLEEIAGSLPIDEVAGLRTPEYMHHKSWLFADTPQK
A9NNQ6______________MANPVIPRVKLGNQGLEVSKLGYGCMGLTGIYNNPVSEEDGISIIKYAFEKGITFFDTADVYGSTKNEVLVGKALKQLPRENVQLATKFGIVMIDGKMDAKGTPEYVRKCCEASLKRLDVEYIDLYYQHRVDTTVPIEETIGELKKLVEEGKIKYIGLSEASVDTIRRAHAVHPITAVQLEWSLWTRDIEESIVPVCRELGIGIVPYSPLGRGFFSGKAVVESLPENSSLVSHPRFKGENLEKNKIFYTHIANLAKKHGCTPGQLALAWVLHQGDDVIPIPGTTKAKNLDENIGSLNVELSQQDLEEIVGSLPVDEVAGLRTYESMYHKSWIFSDTPQK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1086	16	83			0.994512
1096	16		83		0.994512
1142		33		66	1.0
1203	85		14		0.993533
1317	90			10	0.90298
1342		11		88	0.923564
1395	9			90	0.999872
1396	9			90	0.999872
1397	9	90			0.999872
1402	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain