SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4364

Length: 3372 nt

UniGene Fasta

>sp_v3.0_unigene4364
ATGGGATCCATAATATGTATATATATATATTGTGGAATCAAGGAAGAGCATATATGGTGAAAGGTGAAGAGGGTTGTAAGTAACAGCAGCAGGAGGGCAAGAAGACAGGAAAACGAAGTATGAAGGATCCAGAGAGCGCTACCAAATTGGTGCTGCGGCACCTCCCGCCAACCCTATCGGAAGCTGCTCTCAGAGACCGGATCGATGCCCATTTCACCGGCCGCTACAATTGGCTTTGTTTTCGACCACCCAACACTAGCAGCCTGAGTCACAGGCACCAACTCTATTCTCGGGCGTACATTCAATTGAAGACCCCTCAGGATGTTTTCGAATTCGCTAACATGTTTAATGGCCATATCTTTGTTAATGAGAAAGGAAGTCAATTCAAAGCCGTGGTTGAGTATGCTCCCTATCAATGTGTCCCTGATACATCTAAGAAAGATCCGAGAGCAGGCACAATATACAAAGATCCTAAATACGTGGAATTTCTCGAGATGTTATCAAAACCCATTGAGAATCTCCCAAGTGCAGAGATACAGTTAGAAAGGAAAGAAGCTGAAAGAGCAGTTGCAGGGAAAGGTGATGCCATTGTCACCCCATTGATGGAATTTGTTAGACAGAGACGGGCTGCAAAAAGTGGGCCCTCGAGACTAGCAACTTCAAACAGGAGGTCAGGGGGAAGGGTCAGAGGAGCTAATTCACCTTCAAGTCCTTCAGTTATCAGAAGGGGTTCTGAAAGGAGCAAAATGAGCAATGTTGCGTATGTCCTGAGGGATAGTGCAAAAGTTGCAAGCAACAAGGATAAGTCAACATATGTTTTAGCTTCACAGAGAGAACAACAGCAGTGTCGAGAAAATGAGATCCTGATTGAGAAGAATAGAAGAGATGCTGTTGAAGGAAAAGACCGACATATTAGCTATGATTCAACTATTTCCCTTCCAAACTGGACAGAGATGCTTGAAGACGAGGCTGGCATTTCTGTAAAAAATATCCAAGATCCAACAGTTATGCACAATGATGGAATGACCGCTGTAGTGGATGGAGCTGGGGAAGCTGGAAAGAGAAGATTGCTACTATCAAAAGAGAGGGAAAAGGAACTATCAAATGGGCCTGCCATTGGGTTATCCTCACCAAATGGCATTGATACTGGTGTCCAACTCCAGAGGCGGCATACATCTAGCGTCAAAGGTTCTGCCTCTGCACCACAGACAGGTGGATCATTGCATCAGCACGGCATAACATCTCCCGGAAAAGGTACTCCAGGGAGTTTGACTCTAAAGCAGAATCAGCGTTCGGAATCCAGTGGTAGGATAGGAAGAGGTATGATTTCAACCAAAGATCTTCAGCTACCTGTTACATCATCAAATACAGAGCAGCAAAATCAGTTGTTTTTGACAAGCTCTGAAAAGGACAAGCGACCACCTAAACATCCAGGTCCTCGATGTGGTTTGAAAGACCATGGCTCTGGTCTGGCTTCTCCAAGTTCTTTTGCTGATATAAATAGCAAGAATTTTCAAGATGAGAAAAGTACACATACAACTGAAAGGCAAGACAGGCGCACAAGGAACAAGGACAGGCCTGACCGTCCGGTTTGGACTCCTCGTCGTCGTTCGGATGGCTCTTCTGTTTCAGATGCATCTCAACCATCATCAGAGTCACTTGTGAGTGCAAAATTTCAAAGTGGACCTGAAGGTCTTTCCAAATTAGAAAAGATTGAAAAGGGCTCTGCATTTCAACAAAATGTAGGGTTTGCAGAAGCAACAGTGGAGGATAACTCTCAGCAAGGAGATAATGTGAGTGATACCTCAGTCTCAGTGAAATTCCGCCACCCAGATTTAATAGGGTCTCAAACAGCTCGTCGGTCAAATGCTACTTCTGGTGTTATAGCTTCCTGGAACAACACATCTACCAATCAGGTAGATCTAAAAAGTGAAACTGCGATGGCAAGTGGAGGTGTAGATTTTGAAATCCAAGGAAACGGCCGTATGATTCTTGCAACTGCAGAGAATGGGAATCATAGGCAGCTTTTGAGGCGGCCTTCAGCTCCTACAACAAGGGAGGTGGATGGAGCATTGACTTTGGGAGAATCAAAACCAGCCAAACGGGGTGGTGCTGTAGGGTATGGAAGCCAGGAGAAGCAAGTATGGGTTGCAGTACAGAAATCAGGCTCTTAGTTCATAAGTATTTTTTTTTGACCTGGGTGCCAAATTCAAGCATCTGGCATGTTATGGGGAAATTGGTTCAAGAGACTATCCTCAGTTTCCACCTTGTGAGTTCTACAAGCTAGTGTCCTAAGTGCATAGAGGAAAGAAACTGGTATGCTTCCAGTTCATAAAGAAAACAGTTTCTTTCAGCCATGGAATGTGAACACACAGTTGGGGTCTTGTGAGATGTTTTCTTGCTACTACACTCCATGCAGTCTGCTTTCTTGTTTTTGGTCTGGGTGATCAAATATTGAAGTTGAAATTTGGCAGCTCACCGATTATTTTATGGAGATCAATTTTTGTCTGGAGGCAACACCATTATTGGTTTAGCTGAGAATATTGATGCTTCATCATAGGATGGTGGTTCGAAATTTATGTAATGCTGGTTTGTGATCTACGGGGACGAGTATACGTATTATTATTGATTAACAGCTATTGTTGATATGATCGCTTTTGCCAAGTTCTCATCGGTGCACTGTCTAATTCCCTAGCCATGATGAATATGCATATCTGTTTGAAAGAGCATTATTATGGAGGGTGACAGGTATTCTGAGTGAGCTGAAGTTTAGCTACCGGGTGAATGACTTAACAAGTTGCAGGAAAAATACATGTTACACTGTAGAAACATGTTATGAAACTTGGTTGCTGGGTTCCATTTTGTTCCCAGTCTTGGGAAATGCAAATTTTTCCATTGAGTGCAGGCATTGGTTATCGACATCTTGTGGAATCGAGGAACTGAAATGCTACTATAAACTGTAGAGTTACAGAATTCTGTTGAGTTACACACCAGCCTTAGAGTCGGAGGTTTTCATAGTAAGCTCGGTAGTTCTTGATCTGTTGTCCTGCATGCGCTGAATTATCTGTAGTTATGACTGCAACTGCTAAAAATGTAAGGTAAAAGTTGCAGAGTGTGCAAATATATAAAGAAAAACAAAAGGCTTGCCAGCCTACATGGAAAAGTTATATGAGTTGAGAGTGTCAAAGTACTTTCAATGATTCATATGTAATTTCTGATCTTTTACCAGTTGAGATGCCAATATATATTAAGCATCCATGTTTATGTTATCAGAAATGATGTGAAATATATTCAGGTGTTTTGTAAGGATTTGCTAAGAGCTTTTTGGTCAGTGATCTTTACAATGGTATAGGATTTTGTTGAGATTGCGCC

Ace file of the UniGene sp_v3.0_unigene4364

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nonsense-mediated decay UPF3 [Medicago truncatula]	-	-	0.0	48%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	43%

Source	Gene names
Sma3	GSVIVT00035287001; GSVIVT00038330001; POPTRDRAFT_672843; POPTRDRAFT_827452; RCOM_1602680;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of nonsense-mediated decay, UPF3	IPR005120	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9N0F2

Fln msg: your sequence is longer than subject: 685 - 527

Fln protein: MKDPESATKLVLRHLPPTLSEAALRDRIDAHFTGRYNWLCFRPPNTSSLSHRHQLYSRAYIQLKTPQDVFEFANMFNGHIFVNEKGSQFKAVVEYAPYQCVPDTSKKDPRAGTIYKDPKYVEFLEMLSKPIENLPSAEIQLERKEAERAVAGKGDAIVTPLMEFVRQRRAAKSGPSRLATSNRRSGGRVRGANSPSSPSVIRRGSERSKMSNVAYVLRDSAKVASNKDKSTYVLASQREQQQCRENEILIEKNRRDAVEGKDRHISYDSTISLPNWTEMLEDEAGISVKNIQDPTVMHNDGMTAVVDGAGEAGKRRLLLSKEREKELSNGPAIGLSSPNGIDTGVQLQRRHTSSVKGSASAPQTGGSLHQHGITSPGKGTPGSLTLKQNQRSESSGRIGRGMISTKDLQLPVTSSNTEQQNQLFLTSSEKDKRPPKHPGPRCGLKDHGSGLASPSSFADINSKNFQDEKSTHTTERQDRRTRNKDRPDRPVWTPRRRSDGSSVSDASQPSSESLVSAKFQSGPEGLSKLEKIEKGSAFQQNVGFAEATVEDNSQQGDNVSDTSVSVKFRHPDLIGSQTARRSNATSGVIASWNNTSTNQVDLKSETAMASGGVDFEIQGNGRMILATAENGNHRQLLRRPSAPTTREVDGALTLGESKPAKRGGAVGYGSQEKQVWVAVQKSGS*

Protein Length: 686

Fln nts: ATGGGATCCATAATATGTATATATATATATTGTGGAATCAAGGAAGAGCATATATGGTGAAAGGTGAAGAGGGTTGTAAGTAACAGCAGCAGGAGGGCAAGAAGACAGGAAAACGAAGT_-_ATGAAGGATCCAGAGAGCGCTACCAAATTGGTGCTGCGGCACCTCCCGCCAACCCTATCGGAAGCTGCTCTCAGAGACCGGATCGATGCCCATTTCACCGGCCGCTACAATTGGCTTTGTTTTCGACCACCCAACACTAGCAGCCTGAGTCACAGGCACCAACTCTATTCTCGGGCGTACATTCAATTGAAGACCCCTCAGGATGTTTTCGAATTCGCTAACATGTTTAATGGCCATATCTTTGTTAATGAGAAAGGAAGTCAATTCAAAGCCGTGGTTGAGTATGCTCCCTATCAATGTGTCCCTGATACATCTAAGAAAGATCCGAGAGCAGGCACAATATACAAAGATCCTAAATACGTGGAATTTCTCGAGATGTTATCAAAACCCATTGAGAATCTCCCAAGTGCAGAGATACAGTTAGAAAGGAAAGAAGCTGAAAGAGCAGTTGCAGGGAAAGGTGATGCCATTGTCACCCCATTGATGGAATTTGTTAGACAGAGACGGGCTGCAAAAAGTGGGCCCTCGAGACTAGCAACTTCAAACAGGAGGTCAGGGGGAAGGGTCAGAGGAGCTAATTCACCTTCAAGTCCTTCAGTTATCAGAAGGGGTTCTGAAAGGAGCAAAATGAGCAATGTTGCGTATGTCCTGAGGGATAGTGCAAAAGTTGCAAGCAACAAGGATAAGTCAACATATGTTTTAGCTTCACAGAGAGAACAACAGCAGTGTCGAGAAAATGAGATCCTGATTGAGAAGAATAGAAGAGATGCTGTTGAAGGAAAAGACCGACATATTAGCTATGATTCAACTATTTCCCTTCCAAACTGGACAGAGATGCTTGAAGACGAGGCTGGCATTTCTGTAAAAAATATCCAAGATCCAACAGTTATGCACAATGATGGAATGACCGCTGTAGTGGATGGAGCTGGGGAAGCTGGAAAGAGAAGATTGCTACTATCAAAAGAGAGGGAAAAGGAACTATCAAATGGGCCTGCCATTGGGTTATCCTCACCAAATGGCATTGATACTGGTGTCCAACTCCAGAGGCGGCATACATCTAGCGTCAAAGGTTCTGCCTCTGCACCACAGACAGGTGGATCATTGCATCAGCACGGCATAACATCTCCCGGAAAAGGTACTCCAGGGAGTTTGACTCTAAAGCAGAATCAGCGTTCGGAATCCAGTGGTAGGATAGGAAGAGGTATGATTTCAACCAAAGATCTTCAGCTACCTGTTACATCATCAAATACAGAGCAGCAAAATCAGTTGTTTTTGACAAGCTCTGAAAAGGACAAGCGACCACCTAAACATCCAGGTCCTCGATGTGGTTTGAAAGACCATGGCTCTGGTCTGGCTTCTCCAAGTTCTTTTGCTGATATAAATAGCAAGAATTTTCAAGATGAGAAAAGTACACATACAACTGAAAGGCAAGACAGGCGCACAAGGAACAAGGACAGGCCTGACCGTCCGGTTTGGACTCCTCGTCGTCGTTCGGATGGCTCTTCTGTTTCAGATGCATCTCAACCATCATCAGAGTCACTTGTGAGTGCAAAATTTCAAAGTGGACCTGAAGGTCTTTCCAAATTAGAAAAGATTGAAAAGGGCTCTGCATTTCAACAAAATGTAGGGTTTGCAGAAGCAACAGTGGAGGATAACTCTCAGCAAGGAGATAATGTGAGTGATACCTCAGTCTCAGTGAAATTCCGCCACCCAGATTTAATAGGGTCTCAAACAGCTCGTCGGTCAAATGCTACTTCTGGTGTTATAGCTTCCTGGAACAACACATCTACCAATCAGGTAGATCTAAAAAGTGAAACTGCGATGGCAAGTGGAGGTGTAGATTTTGAAATCCAAGGAAACGGCCGTATGATTCTTGCAACTGCAGAGAATGGGAATCATAGGCAGCTTTTGAGGCGGCCTTCAGCTCCTACAACAAGGGAGGTGGATGGAGCATTGACTTTGGGAGAATCAAAACCAGCCAAACGGGGTGGTGCTGTAGGGTATGGAAGCCAGGAGAAGCAAGTATGGGTTGCAGTACAGAAATCAGGCTCTTAG___TTCATAAGTATTTTTTTTTGACCTGGGTGCCAAATTCAAGCATCTGGCATGTTATGGGGAAATTGGTTCAAGAGACTATCCTCAGTTTCCACCTTGTGAGTTCTACAAGCTAGTGTCCTAAGTGCATAGAGGAAAGAAACTGGTATGCTTCCAGTTCATAAAGAAAACAGTTTCTTTCAGCCATGGAATGTGAACACACAGTTGGGGTCTTGTGAGATGTTTTCTTGCTACTACACTCCATGCAGTCTGCTTTCTTGTTTTTGGTCTGGGTGATCAAATATTGAAGTTGAAATTTGGCAGCTCACCGATTATTTTATGGAGATCAATTTTTGTCTGGAGGCAACACCATTATTGGTTTAGCTGAGAATATTGATGCTTCATCATAGGATGGTGGTTCGAAATTTATGTAATGCTGGTTTGTGATCTACGGGGACGAGTATACGTATTATTATTGATTAACAGCTATTGTTGATATGATCGCTTTTGCCAAGTTCTCATCGGTGCACTGTCTAATTCCCTAGCCATGATGAATATGCATATCTGTTTGAAAGAGCATTATTATGGAGGGTGACAGGTATTCTGAGTGAGCTGAAGTTTAGCTACCGGGTGAATGACTTAACAAGTTGCAGGAAAAATACATGTTACACTGTAGAAACATGTTATGAAACTTGGTTGCTGGGTTCCATTTTGTTCCCAGTCTTGGGAAATGCAAATTTTTCCATTGAGTGCAGGCATTGGTTATCGACATCTTGTGGAATCGAGGAACTGAAATGCTACTATAAACTGTAGAGTTACAGAATTCTGTTGAGTTACACACCAGCCTTAGAGTCGGAGGTTTTCATAGTAAGCTCGGTAGTTCTTGATCTGTTGTCCTGCATGCGCTGAATTATCTGTAGTTATGACTGCAACTGCTAAAAATGTAAGGTAAAAGTTGCAGAGTGTGCAAATATATAAAGAAAAACAAAAGGCTTGCCAGCCTACATGGAAAAGTTATATGAGTTGAGAGTGTCAAAGTACTTTCAATGATTCATATGTAATTTCTGATCTTTTACCAGTTGAGATGCCAATATATATTAAGCATCCATGTTTATGTTATCAGAAATGATGTGAAATATATTCAGGTGTTTTGTAAGGATTTGCTAAGAGCTTTTTGGTCAGTGATCTTTACAATGGTATAGGATTTTGTTGAGATTGCGCC

Fln Alignment:

Contig4364___TKLVLRHLPPTLSEAALRDRIDAHFTGRYNWLCFRPPNTSSLSHRHQLYSRAYIQLKTPQDVFEFANMFNGHIFVNEKGSQFKAVVEYAPYQCVPDT-SKKDPRAGTIYKDPKYVEFLEMLSKPIENLPSAEIQLERKEAERAVAGKGDAIVTPLMEFVRQRRAAKSGPSRLATSNRRSGGRVRGANSPSSPSVIRRGSERSKMSNVAYVLRDSAKVASNKDKSTYVLASQREQQQCRENEILIEKNRRDAVEGKDRHISYDSTISLPNWTEMLEDEAGISVKNIQDPTVMHNDGMTAVVDGAGEAGXXXXXXXXXXXXXXXNGPAIGLSSPNGIDTGVQLQRRHTSSVKGSASAPQTGGSLHQHGITSPGKGTPGSLTLKQNQRSESSGRIGRGMISTKDLQLPVTSSNTEQQNQLFLTSSEKDKRPPKHPGPRCGLKDHGSGLASPSSFADINSKNFQDEKSTHTTERQDRRTRNKDRPDRPVWTPRRRSDGSSVSDASQPSSES
B9N0F2______________TKVVVRHLPPGISQPMFVEQIDVAFSGRYNWLSYRPGNNSQ---KHQSYSRAYIDFKRPEDVIDFAEFFNGHIFVNEKGTQFKAIVEYSPSQRVPKQWSKKDGREGTISKDPEYLEFLELIAKPVENLPSAEIQLERREAERAGAAKDAPIVTPLMDFVRQKRVAKNGPRRI-LSNGKLSRRAGGSGSPSSSS-LKRGSEKKRISTTMYVLRDTAKSTSGKDKSTYVHVPKRDDQQ----------------------LSNAVTLGSGSGTAVLEDE--------------------SVVSGITDSGKKKILL-------------------------LKGKEKEISLVTGTMSQQQSISSSDRNIISS---------TALKSQRRETSGRMIRSILLNKDSR-HIRSSGVHSEPQMQTSNLEKEKRPPRPPHAQLGLKDAN---GTP------DDKVVGNDLHGFPNEKQEKRTRNKDRPDRGVWTPLRRSDGSYASDESLLSSAS

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
787	16		83		0.994512
822	83		16		0.994512
926		85		14	0.993533
999		20		80	0.999996
1055		90		10	0.90298
1246	11	88			0.923564
1248	11	66		22	0.999999
1249			88	11	0.923564
1250			88	11	0.923564
1297	12		87		0.992554
1323		28		71	1.0
1666	87		12		0.992554
1930	60			40	1.0
1931	60	40			1.0
1934	40		60		1.0
1935	60	40			1.0
1937	60	40			1.0
1940		40	60		1.0
1942	40		60		1.0
1943	60	40			1.0
1945			60	40	1.0
1948	60	40			1.0
1950			60	40	1.0
1951		40		60	1.0
1976	66		33		0.997452
2609	14		85		0.993533
2610			85	14	0.993533
2611	85		14		0.993533
2612		85	14		0.993533
3330		20		80	0.996423
3356			50	50	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
18	30	TA TA TA TA TA TA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain