SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4190

Length: 1442 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene4190

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable fibrillarin (Fragment) n=2 Tax=Picea RepID=O65058_PICMA	-	-	99%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Fibrillarin	IPR000692	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G25630.1	FIB2, ATFIB2 fibrillarin 2 chr4:13074239-13076205 FORWARD LENGTH=320	87%
RefSeq	Arabidopsis thaliana	NP_567724.1	rRNA 2'-O-methyltransferase fibrillarin 2 [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002318803.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1P1

Fln msg:

Fln protein: MRPPRGGGRGGFRGGRDGGGRGGGRFGGRGGDRGGGGRGGGRFGGRGGDRGGRGGRGRGGRGGGMKGGAKVVIEPHRHEGVFIAKAKEDALVTKNMAAGESVYGEKRISVQNEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGTHVLYLGAASGTTVSHVSDIVGPTGIVYAVEMSHRSGRDLVNMAKKRTNVIPIIEDARYPVRYRMLVGMVDVIFADVAQPDQARIVALNGHYFLKNGGHFVLSIKANCIDSTVPAEAVFAQEVKKLQKEQFKPFEQVTLEPFERDHACVVGGYRMPKKQKAADAAA*

Protein Length: 314

Fln nts: TCAGTATAGGGTGTTTTAGGGTTTGGTTTAGGGTTTTGAATATGACATTCGGTATAGGGTTTTTTTAGGGTTTAAGGTTGCGAGTAGAGAAACACCACTTAAAGGGCAGCTGGGCTTTAGCTATGGGGGCAGTGAAGCGAGGGAGTCGACGAGTCTTTGAATTTGCAGTAGCAGAAATTTTGTCACA_-_ATGAGGCCGCCAAGAGGGGGTGGCCGTGGTGGATTCAGAGGGGGCCGCGATGGCGGAGGGAGAGGAGGTGGCCGCTTTGGCGGTAGAGGGGGTGATCGTGGTGGTGGAGGCAGAGGAGGCGGCCGATTCGGTGGTCGAGGGGGTGACCGTGGTGGAAGAGGAGGCAGAGGCCGTGGTGGCAGAGGCGGTGGGATGAAGGGTGGAGCCAAGGTTGTGATTGAGCCGCACAGACACGAGGGGGTTTTCATCGCCAAGGCAAAGGAGGATGCCCTTGTCACGAAGAATATGGCCGCAGGAGAAAGTGTTTACGGAGAGAAAAGGATCAGCGTTCAGAATGAGGATGGTACAAAGACAGAGTATAGAGTGTGGAACCCTTTCCGATCAAAGTTGGCTGCAGCTATTCTAGGAGGGGTGGATAATATCTGGATTAAACCTGGAACGCATGTCCTGTATCTGGGTGCTGCATCTGGTACTACTGTTTCACATGTATCCGACATTGTTGGTCCGACTGGCATTGTGTATGCAGTTGAAATGTCGCACAGAAGTGGTCGGGATTTAGTCAACATGGCAAAGAAACGTACAAACGTGATACCTATTATTGAAGATGCCAGATACCCCGTTCGGTACAGGATGCTTGTTGGTATGGTTGATGTTATTTTTGCTGATGTTGCCCAGCCAGACCAGGCACGTATTGTGGCATTAAATGGCCATTATTTTTTGAAAAATGGTGGCCATTTTGTATTATCTATCAAGGCAAATTGTATTGACTCTACTGTGCCAGCTGAGGCAGTGTTTGCTCAGGAAGTTAAGAAGTTGCAAAAAGAGCAATTTAAGCCATTTGAGCAGGTGACATTAGAACCTTTTGAAAGAGATCATGCTTGTGTTGTGGGTGGATACAGAATGCCCAAGAAGCAGAAAGCAGCAGATGCAGCTGCTTGA___AGGAGTCTCTGGGACCAAGAAGCAAGCTCCTTTTCTCAGAATGCAAAATGCTATCTTAGATCACTCAAGTGATGCCTTCCTTTCTCTCTCCCTGAAAATGAGCCCTGAAGGACATAGGGAGGGGGGCAGTGACTGGGTTATATTATAAAAGTTTGGACTGCTTTGCCTGGTGTTTTTTTGGCATTTTACATGGGCAAATTTTAATCTAACTGAGAGTTATGTTTGTGCAAAAAATTGATTCGACTACTTGGAGGTGGTGTTATGTTGGAAATGCATTCAATACTCAATAGTTATGGTTTTGTGTTGGGCTATGTTG

Fln Alignment:

Contig4190___MKGGAKVVIEPHRHEGVFIAKAKEDALVTKNMAAGESVYGEKRISVQNEDGTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGTHVLYLGAASGTTVSHVSDIVGPTGIVYAVEMSHRSGRDLVNMAKKRTNVIPIIEDARYPVRYRMLVGMVDVIFADVAQPDQARIVALNGHYFLKNGGHFVLSIKANCIDSTVPAEAVFAQEVKKLQKEQFKPFEQVTLEPFERDHACVVGGYRMPKKQK
A9P1P1______________MKGGARVVIEPHRHEGVFIAKAKEDALVTKNMAAGESVYGEKRISVQNEDSTKTEYRVWNPFRSKLAAAILGGVDNIWIKPGTHVLYLGAASGTTVSHVSDIVGPTGIVYAVEMSHRSGRDLVNMAKKRTNVIPIIEDARYPVRYRMLVGMVDVIFADVAQPDQARIVALNAHYFLKNGGHFVLSIKANCIDSTVPAEAVFAQEVKKLQKEQFKPFEQVTLEPFERDHACVVGGYRMPKKQK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
810	1	95			0.918242
874		95		4	0.995055
876	4	95			0.995055
877	4		95		0.995482
894	4		95		0.99692
1208		33		66	0.997452
1217	33	66			0.997452
1420	77		22		0.999999

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain