SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene4153

Length: 2502 nt

UniGene Fasta

>sp_v3.0_unigene4153
TGGAATATAAACAAGTATGGACATACTGCAATATCCCCCATGTCTGCACACATTGCCATTCATTCACCAGCCATCAAATAAAACCAGACATTTAAATTTAGTACTGCGTCTGCAACACAGGTTGAAGTTGAAGAATTTCATAGGAAAACACCAGGGGATTCACTTTGTTAAAAAACAGAGTATTATCAGGTGTGAGAGCATAACGACAGATAATGTATGGGCCAAAACTGAATGTGGGTCATCTTCAGTTATTGAACTTCCTGGAGGGAAAATGGTGGTTGAACTTGTGGCCGCATGGAATGACTTGACCGATAGAATGAATCCTATTTCGTCCAAGTCCTCTGAATTGCTGTTGAAGGCTTTGAAGCTAACAATCCCTTTGCTGCAGAGCCTGCCATGTGGAGAAGATGGTCGTCCCCCACTCTCAAAAGCTCTTTCTGTGGCTTGTATTCTCGCTGATCTTCAGGTTGAAGCAGAAGTCATAGTTGTTTGTCTTTTGAGAGAACTGCTCGAGGTTGGTGCTATTAGCAGGCATGAAGTAAACCTTCAACTTGGTCGTGGAGTTACTCATTTATTGCATGATTGCTTGCGGGTGAAGAAAATACCAACAAGAGTAGACATTTTGGATGATGACAATGCCTATGCACTGAGAAAGTTCTGTTTGTCTTACCATGATATCAGAGCTGTGATTGTAGAAATTGCTGCTCGATTGGATATGATGAGGCATTTAAAGCATCTCCCAAAATATTGTCAACAAACACTGGCTCTTGATGTCATGCAAATATACGCACCTCTTGCCCATGCAATAGGCACTGGCAGCTTATCATTAGAGCTTGAAGACCTTGCTTTCCAGTCTTTATTTCCAAATTCATATTCATTTGTACATACATGGTTAAGAAACCATGGAACATGGGGTGAAGCCATTTTAAATGAATATAGATGCCATCTATTTGAAGCTCTACAGAAAGATTATGAATTGGAAAAGATGGTGGATAAGATCTCTATACAGGGACGATACAAAAGCCATTTTAGCACTATGAAGAAACTTCTGAAAGACGGCCGTAAACCAGAGGAAGTATATGATATACTAGGCTTACGGATTGTCTTGAACCCTAGGCCAGGGAAGGATGCACAAGAGATAGGAAGGAAGGCATGCTACAGGGCCCGTGATGTTATTCGATCCTTGTGGAAAGAAGTGCCAGAAAGAATGAAAGACTACATTTCTAAGCCAAAACAAAATGGGTATGAGAGCCTGCATTTAACACTTGATCTTAATGACAGTAATTTTGAATCCCCTTACATGGAGATCCAAATTCGCACAGTCGAAATGGATGCTCAGGCTGTTGGTGGGGATGCTTCTCATGGTTTGTACAAAGGCGGGCTAACAGATCCAGAGCAGGTTAAGCAACTTAAGGCAATCATGACGGCTGCTGCTGATCTTGCAGCTTTCCATTTTCAAGGTCTTCCTAAGAATTCTTCTGAAGGATCTACTATACACAATGATATGAAGAGTCGAATTTTCAAGTTATTTGATAAAAACCAAGATGGCTTGATTAGTATGGAGGAGCTCAAAGAAATGATGGAGGAGCTTGGAGCTAATAAAGAAGATGCACAGGAGCTGATGCAGCTAGTAGATGCAAACAGTGATGGTTCTTTGAGTTCTGAAGAATTTAATGAGTTTCAAAAACGGGTAAGGATTTCTCAGAATTTGAATGTCATAGATGAGCAATGCAGTAGACAGTTGGGTGAGAAGCTTCACAGTTCTCACACTGACCAGGAAGGAACTAGTAGCTCTACTAGTGGAGCTTCTTATGACAATGGTTATGGTATAGTTGGGAGTCTTCAAAGTAACCAAGCCACAAAGAAACATGGGATTCTGTCTCAGTATATCACTACACAGACTGACATTCCTTCTAGAGATTTGATAGATGCCAGTGGTGAGGAAGCCCTTGAAGTATTTTGATCAAATTTCATATCTCAGAGGCCATGCAGTGAAAAGATGGGTGACAATGATCCAGTTTTTTACCTGTCTTCGAAGCAGAGCATCTATGTTGCTAGTTGGAGACATGATGTGCCAGGTGCTTAATTGTGGTGAAGAACATTTAGATCAAATTCTTCAGACTGATTCTGTGAAGAAAATCCCACTAGTAGTTGTGGAGACACATTGACAGGATAAAAAATGGGGTTGCTTGAGAAATGAAACTAAATAAATGAGAGCTAACGAGGAACAAGTTTCTGGATATTTATTATTCCTTAACTCCCTTTAAATTATTTTTCTTGAAAATGATACCATTATAAAACTAGAGATCTGATATATTCTCTGTAATAAGAAGACCCTTGATCTACTTTGTGCTGAAACAGATTTCTCTATACATAAATGCAACAAAGCAAACAAGGACTTGGTTGCAGTCCTCCCATGTACATTTTGGATTTGTAGCGACTGGTAATTTCATTTGTACATTACCACTGTTTTCAAGTACCACAAGGAAGAATGATTTGTCA

Ace file of the UniGene sp_v3.0_unigene4153

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RelA-SpoT like protein RSH4 [Nicotiana tabacum]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	calcium ion binding	GO:0005509	Molecular Function	0.0	-
Sma3	guanosine tetraphosphate metabolic process	GO:0015969	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	RelA/SpoT	IPR007685	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G17470.1	ATCRSH, CRSH Ca2+-activated RelA/spot homolog chr3:5979868-5981968 FORWARD LENGTH=583	53%
RefSeq	Arabidopsis thaliana	NP_188374.2	Ca2+-activated RelA/spot-like protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002314331.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NX25

Fln msg: your sequence is longer than subject: 649 - 534

Fln protein: MDILQYPPCLHTLPFIHQPSNKTRHLNLVLRLQHRLKLKNFIGKHQGIHFVKKQSIIRCESITTDNVWAKTECGSSSVIELPGGKMVVELVAAWNDLTDRMNPISSKSSELLLKALKLTIPLLQSLPCGEDGRPPLSKALSVACILADLQVEAEVIVVCLLRELLEVGAISRHEVNLQLGRGVTHLLHDCLRVKKIPTRVDILDDDNAYALRKFCLSYHDIRAVIVEIAARLDMMRHLKHLPKYCQQTLALDVMQIYAPLAHAIGTGSLSLELEDLAFQSLFPNSYSFVHTWLRNHGTWGEAILNEYRCHLFEALQKDYELEKMVDKISIQGRYKSHFSTMKKLLKDGRKPEEVYDILGLRIVLNPRPGKDAQEIGRKACYRARDVIRSLWKEVPERMKDYISKPKQNGYESLHLTLDLNDSNFESPYMEIQIRTVEMDAQAVGGDASHGLYKGGLTDPEQVKQLKAIMTAAADLAAFHFQGLPKNSSEGSTIHNDMKSRIFKLFDKNQDGLISMEELKEMMEELGANKEDAQELMQLVDANSDGSLSSEEFNEFQKRVRISQNLNVIDEQCSRQLGEKLHSSHTDQEGTSSSTSGASYDNGYGIVGSLQSNQATKKHGILSQYITTQTDIPSRDLIDASGEEALEVF*

Protein Length: 650

Fln nts: TGGAATATAAACAAGT_-_ATGGACATACTGCAATATCCCCCATGTCTGCACACATTGCCATTCATTCACCAGCCATCAAATAAAACCAGACATTTAAATTTAGTACTGCGTCTGCAACACAGGTTGAAGTTGAAGAATTTCATAGGAAAACACCAGGGGATTCACTTTGTTAAAAAACAGAGTATTATCAGGTGTGAGAGCATAACGACAGATAATGTATGGGCCAAAACTGAATGTGGGTCATCTTCAGTTATTGAACTTCCTGGAGGGAAAATGGTGGTTGAACTTGTGGCCGCATGGAATGACTTGACCGATAGAATGAATCCTATTTCGTCCAAGTCCTCTGAATTGCTGTTGAAGGCTTTGAAGCTAACAATCCCTTTGCTGCAGAGCCTGCCATGTGGAGAAGATGGTCGTCCCCCACTCTCAAAAGCTCTTTCTGTGGCTTGTATTCTCGCTGATCTTCAGGTTGAAGCAGAAGTCATAGTTGTTTGTCTTTTGAGAGAACTGCTCGAGGTTGGTGCTATTAGCAGGCATGAAGTAAACCTTCAACTTGGTCGTGGAGTTACTCATTTATTGCATGATTGCTTGCGGGTGAAGAAAATACCAACAAGAGTAGACATTTTGGATGATGACAATGCCTATGCACTGAGAAAGTTCTGTTTGTCTTACCATGATATCAGAGCTGTGATTGTAGAAATTGCTGCTCGATTGGATATGATGAGGCATTTAAAGCATCTCCCAAAATATTGTCAACAAACACTGGCTCTTGATGTCATGCAAATATACGCACCTCTTGCCCATGCAATAGGCACTGGCAGCTTATCATTAGAGCTTGAAGACCTTGCTTTCCAGTCTTTATTTCCAAATTCATATTCATTTGTACATACATGGTTAAGAAACCATGGAACATGGGGTGAAGCCATTTTAAATGAATATAGATGCCATCTATTTGAAGCTCTACAGAAAGATTATGAATTGGAAAAGATGGTGGATAAGATCTCTATACAGGGACGATACAAAAGCCATTTTAGCACTATGAAGAAACTTCTGAAAGACGGCCGTAAACCAGAGGAAGTATATGATATACTAGGCTTACGGATTGTCTTGAACCCTAGGCCAGGGAAGGATGCACAAGAGATAGGAAGGAAGGCATGCTACAGGGCCCGTGATGTTATTCGATCCTTGTGGAAAGAAGTGCCAGAAAGAATGAAAGACTACATTTCTAAGCCAAAACAAAATGGGTATGAGAGCCTGCATTTAACACTTGATCTTAATGACAGTAATTTTGAATCCCCTTACATGGAGATCCAAATTCGCACAGTCGAAATGGATGCTCAGGCTGTTGGTGGGGATGCTTCTCATGGTTTGTACAAAGGCGGGCTAACAGATCCAGAGCAGGTTAAGCAACTTAAGGCAATCATGACGGCTGCTGCTGATCTTGCAGCTTTCCATTTTCAAGGTCTTCCTAAGAATTCTTCTGAAGGATCTACTATACACAATGATATGAAGAGTCGAATTTTCAAGTTATTTGATAAAAACCAAGATGGCTTGATTAGTATGGAGGAGCTCAAAGAAATGATGGAGGAGCTTGGAGCTAATAAAGAAGATGCACAGGAGCTGATGCAGCTAGTAGATGCAAACAGTGATGGTTCTTTGAGTTCTGAAGAATTTAATGAGTTTCAAAAACGGGTAAGGATTTCTCAGAATTTGAATGTCATAGATGAGCAATGCAGTAGACAGTTGGGTGAGAAGCTTCACAGTTCTCACACTGACCAGGAAGGAACTAGTAGCTCTACTAGTGGAGCTTCTTATGACAATGGTTATGGTATAGTTGGGAGTCTTCAAAGTAACCAAGCCACAAAGAAACATGGGATTCTGTCTCAGTATATCACTACACAGACTGACATTCCTTCTAGAGATTTGATAGATGCCAGTGGTGAGGAAGCCCTTGAAGTATTTTGA___TCAAATTTCATATCTCAGAGGCCATGCAGTGAAAAGATGGGTGACAATGATCCAGTTTTTTACCTGTCTTCGAAGCAGAGCATCTATGTTGCTAGTTGGAGACATGATGTGCCAGGTGCTTAATTGTGGTGAAGAACATTTAGATCAAATTCTTCAGACTGATTCTGTGAAGAAAATCCCACTAGTAGTTGTGGAGACACATTGACAGGATAAAAAATGGGGTTGCTTGAGAAATGAAACTAAATAAATGAGAGCTAACGAGGAACAAGTTTCTGGATATTTATTATTCCTTAACTCCCTTTAAATTATTTTTCTTGAAAATGATACCATTATAAAACTAGAGATCTGATATATTCTCTGTAATAAGAAGACCCTTGATCTACTTTGTGCTGAAACAGATTTCTCTATACATAAATGCAACAAAGCAAACAAGGACTTGGTTGCAGTCCTCCCATGTACATTTTGGATTTGTAGCGACTGGTAATTTCATTTGTACATTACCACTGTTTTCAAGTACCACAAGGAAGAATGATTTGTCA

Fln Alignment:

Contig4153___MDILQYPPCLHTLPFIHQPSNKTRHLNLVLRLQHRLKLKNFIGKHQGIHFVKKQSIIRCESIT-TDNVWAKTECGSSSVIELPGGKMVVELVAAWNDLTDRMNPIXXXXXXXXXXXXXXXXXXXQSLPCGEDGRPPLSKALSVACILADLQVEAEVIVVCLLRELLEVGAISRHEVNLQLGRGVTHLLHDCLRVKKIPTRVDILDDDNAYALRKFCLSYHDIRAVIVEIAARLDMMRHLKHLPKYCQQTLALDVMQIYAPLAHAIGTGSLSLELEDLAFQSLFPNSYSFVHTWLRNHGTWGEAILNEYRCHLFEALQKDYELEKMVDKISIQGRYKSHFSTMKKLLKDGRKPEEVYDILGLRIVLNPRPGKDAQEIGRKACYRARDVIRSLWKEVPERMKDYISKPKQNGYESLHLTLDLNDSNFESPYMEIQIRTVEMDAQAVGGDASHGLYKGGLTDPEQVKQLKAIMTAAADLAAFHFQGLPKNSSEGSTIHNDMKSRIFKLFDKNQDGLISXXXXXXXXXXXGANKEDAQ
A9NX25______________MGILQRSTCLHTLPSIYHTSNKTNNLRLLLPLQHRLKLKNFIGKHQRNNFVKKQRSITCESRTKTEYVLAKNECGSSSVIELPGGKMVVELVAAWNDLTDRMNPISSKSSELLLKALKITIPLLQSLPCGEDGRPPLSKALSVACILADLQVEAEVIVVCLLRELLEAGAISRHEINLQLGRGITHLLHDCLRVKKIPTRVDILDDDNAYALRKFCLAYHDIRAVIVEVAARLDMMRHSKHLPKYCQQTLALDVMQVYAPLAHAIGTGSLSLELEDLAFQSLFPNSYSFVDTWLRNHGTWGEAILNEYRCQLFEALQKDYELEKMVDKISIQGRYKSHFSTMKKLLKDGRKPEEVYDILGLRVVLNPRPGKDAQEIGRKVCYRAREVIQSLWKEVPQRMKDYVAKPKKNGYESLHLTIDLNDSNFESPSMEIQIRTAEMDAKAVGGDASHGLYKGGLTDPEQVKQLKAIMMAAADLAAFHFQGLPKRSSKGSTMHNDMKSRIFKLFDKNQDGLISMEELKEMMEELGANKEDAQ

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
243	33	66			0.997452
244	33			66	0.997452
246		66	33		0.997452
247	66			33	0.997452
475		75		25	0.996473
655	80			20	0.995493
720	16		83		0.994512
724	83			16	0.994512
1239	88			11	0.923564
1240	88			11	0.923564
1251		12	87		0.992554
1253			87	12	0.992554
1254		87		12	0.992554
1284	14			85	0.993533
1285	85	14			0.993533
2039	80			20	0.995493
2372	50		50		1.0
2423	66			33	0.997452
2424		66		33	0.997452
2425	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain